Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p18720 Brassica napus
A01p38630 Brassica napus
A03p39230 Brassica napus
A03p57320 Brassica napus
A05p34150 Brassica napus
A06p01200 Brassica napus
A08p20420 Brassica napus
A08p20450 Brassica napus
Aa31LG10G2020 Aethionema arabicum
Aa31LG3G10110 Aethionema arabicum
Aa31LG5G10010 Aethionema arabicum
Aa31LG5G10020 Aethionema arabicum
Aa31LG7G15740 Aethionema arabicum
Aa31LG8G11430 Aethionema arabicum
Aa31LG8G2500 Aethionema arabicum
Aa31LG9G9520 Aethionema arabicum
Actinidia11021 Actinidia chinensis
Actinidia11083 Actinidia chinensis
Ah.04g164820 Amaranthus hybridus
AL1G61470 Arabidopsis lyrata
AL3G27740 Arabidopsis lyrata
AL7G25270 Arabidopsis lyrata
AL7G45340 Arabidopsis lyrata
Aqoxy1G01960 Aquilegia oxysepala
Aqoxy1G01961 Aquilegia oxysepala
Aqoxy1G02397 Aquilegia oxysepala
Aqoxy4G00745 Aquilegia oxysepala
Aqoxy4G00749 Aquilegia oxysepala
Aqoxy4G00750 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.425CWT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5YY2H2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.92S0K9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A63KDQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E3CL15 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FLJ2SC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JI498E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y2CVLD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZUZE17 Arachis hypogaea
AT1G53110 Arabidopsis thaliana
AT3G15340 Arabidopsis thaliana
AT4G27500 Arabidopsis thaliana
AT5G36690 Arabidopsis thaliana
AT5G36780 Arabidopsis thaliana
ATR0737G090 Amborella trichopoda
Atru.chr6.2980 Acer truncatum
Atru.chr6.2981 Acer truncatum
AUR62019432 Chenopodium quinoa
AUR62039203 Chenopodium quinoa
BcaB03g12536 Brassica carinata
BcaB06g29556 Brassica carinata
BcaB07g33357 Brassica carinata
BcaC01g02307 Brassica carinata
BcaC01g03882 Brassica carinata
BcaC05g28994 Brassica carinata
BcaC06g32686 Brassica carinata
BcaC07g38285 Brassica carinata
BcaC07g38286 Brassica carinata
BcaC08g43496 Brassica carinata
BcaNung07240 Brassica carinata
BcaNung07301 Brassica carinata
BolC1t02320H Brassica oleracea
BolC3t17036H Brassica oleracea
BolC3t18946H Brassica oleracea
BolC5t33877H Brassica oleracea
BolC6t35959H Brassica oleracea
BolC7t46031H Brassica oleracea
BolC8t48712H Brassica oleracea
BraA01t01818Z Brassica rapa
BraA01t03921Z Brassica rapa
BraA03t13074Z Brassica rapa
BraA03t14760Z Brassica rapa
BraA03t14798Z Brassica rapa
BraA05t22237Z Brassica rapa
BraA06t23347Z Brassica rapa
BraA08t34000Z Brassica rapa
BraA08t34001Z Brassica rapa
C01p23680 Brassica napus
C03p13550 Brassica napus
C03p18970 Brassica napus
C03p47610 Brassica napus
C05p34330 Brassica napus
C05p51900 Brassica napus
C06p08810 Brassica napus
C07p55520 Brassica napus
C08p10310 Brassica napus
C08p14880 Brassica napus
C09p26750 Brassica napus
CAN.G162.54 Capsicum annuum
CAN.G213.8 Capsicum annuum
CANSAT56G3600 Cannabis sativa
CARHR043330 Cardamine hirsuta
CARHR090300 Cardamine hirsuta
CARHR235180 Cardamine hirsuta
Carub.0001s0063 Capsella rubella
Carub.0001s4227 Capsella rubella
Carub.0003s1498 Capsella rubella
Carub.0007s1335 Capsella rubella
Ca_01848_v3 Cicer arietinum L.
Ca_26977_v3 Cicer arietinum L.
CBR_g45701 Chara braunii
Cc00_g07940 Coffea canephora
Cc05_g11980 Coffea canephora
CDE02G4245 Ceratophyllum demersum
CDE08G0095 Ceratophyllum demersum
CDE09G0865 Ceratophyllum demersum
Cfa020580 Carpinus fangiana
Ciclev10008004m.g Citrus clementina
CiPaw.11G170100 Carya illinoinensis
CiPaw.12G118700 Carya illinoinensis
ClCG06G002050 Citrullus lanatus
ClCG11G018050 Citrullus lanatus
COL.COLO4_27176 Corchorus olitorius
Cpa.g.sc80.67 Carica papaya
Cpa.g.sc80.68 Carica papaya
Cre03.g194350 Chlamydomonas reinhardtii
CsaV3_4G033670 Cucumis sativus L.
CsaV3_6G008100 Cucumis sativus L.
CsaV3_6G008120 Cucumis sativus L.
CSS0000814 Camellia sinensis var. sinensis
CSS0012512 Camellia sinensis var. sinensis
CSS0030542 Camellia sinensis var. sinensis
DCAR_019557 Daucus carota
DCAR_020991 Daucus carota
Dinv00351 Davidia involucrata
Dinv03896 Davidia involucrata
Dinv04301 Davidia involucrata
Dinv20177 Davidia involucrata
Duzib170G0794 Durio zibethinus
ECA240G0380 Erigeron canadensis
EL10Ac4g08186 Beta vulgaris
Eucgr.F01145 Eucalyptus grandis
Eucgr.F03312 Eucalyptus grandis
Eucgr.F03313 Eucalyptus grandis
FAN11G1959 Fragaria x ananassa
FAN16G0257 Fragaria x ananassa
FAN16G1498 Fragaria x ananassa
FAN16G2121 Fragaria x ananassa
FAN16G2127 Fragaria x ananassa
FAN21G0480 Fragaria x ananassa
FAN25G0802 Fragaria x ananassa
FvH4_3g19880 Fragaria vesca
Glyma.06G240500 Glycine max
Glyma.12G224800 Glycine max
Glyma.13G276500 Glycine max
Glyma.13G296001 Glycine max
Gohir.A01G063400 Gossypium hirsutum
Gohir.A02G039900 Gossypium hirsutum
Gohir.A02G080501 Gossypium hirsutum
Gohir.A04G030600 Gossypium hirsutum
Gohir.A13G126100 Gossypium hirsutum
Gohir.A13G146000 Gossypium hirsutum
Gohir.D01G049800 Gossypium hirsutum
Gohir.D02G007150 Gossypium hirsutum
Gohir.D05G354300 Gossypium hirsutum
Gohir.D05G355100 Gossypium hirsutum
Gohir.D05G355175 Gossypium hirsutum
Gohir.D05G355400 Gossypium hirsutum
Gohir.D13G129900 Gossypium hirsutum
Gohir.D13G150900 Gossypium hirsutum
Gorai.002G069700 Gossypium raimondii
Gorai.005G008400 Gossypium raimondii
Gorai.009G386100 Gossypium raimondii
Gorai.009G386800 Gossypium raimondii
Gorai.009G386900 Gossypium raimondii
Gorai.009G387800 Gossypium raimondii
Gorai.013G145900 Gossypium raimondii
Gorai.013G168900 Gossypium raimondii
GSVIVG01014330001 Vitis vinifera
GSVIVG01020845001 Vitis vinifera
HanXRQChr09g0244021 Helianthus annuus
HanXRQChr13g0389181 Helianthus annuus
HanXRQChr13g0389191 Helianthus annuus
Haze_13182 Corylus avellana
Hma1.2p1_0531F.1_g173370 Hydrangea macrophylla
Hma1.2p1_0898F.1_g234450 Hydrangea macrophylla
Hma1.2p1_0898F.1_g234460 Hydrangea macrophylla
HPP92_024062 Vanilla planifolia
HPP92_028219 Vanilla planifolia
Hund02226 Selenicereus undatus
Hund02227 Selenicereus undatus
Hund19050 Selenicereus undatus
Hund22838 Selenicereus undatus
Lalb_Chr03g0030641 Lupinus albus
Lalb_Chr03g0030651 Lupinus albus
Lalb_Chr19g0134171 Lupinus albus
Lalb_Chr19g0134181 Lupinus albus
Lalb_Chr20g0109631 Lupinus albus
Lalb_Chr25g0286341 Lupinus albus
Lj1C842G6 Lonicera japonica
Lj3g0008045 Lotus japonicus
Lj3g0009937 Lotus japonicus
Lj8A155G95 Lonicera japonica
Lsat_1_v5_gn_9_97981 Lactuca sativa
Manes.03G109600 Manihot esculenta
Manes.15G087400 Manihot esculenta
MBI07_g30189_MAGBIO Magnolia biondii
MD03G1228300 Malus domestica
MD11G1247800 Malus domestica
Medtr0370s0010 Medicago truncatula
Medtr2g085330 Medicago truncatula
Medtr2g090520 Medicago truncatula
Medtr2g090525 Medicago truncatula
Medtr2g090555 Medicago truncatula
Medtr4g132200 Medicago truncatula
MELO3C016696.2 Cucumis melo
MELO3C022323.2 Cucumis melo
MELO3C022325.2 Cucumis melo
MELO3C024939.2 Cucumis melo
MELO3C026823.2 Cucumis melo
Migut.H01943 Erythranthe guttata
Migut.M00803 Erythranthe guttata
Nitab4.5_0000207g0080 Nicotiana tabacum
Nitab4.5_0000332g0070 Nicotiana tabacum
Nitab4.5_0001241g0060 Nicotiana tabacum
Nitab4.5_0001336g0080 Nicotiana tabacum
Nitab4.5_0002383g0030 Nicotiana tabacum
Nitab4.5_0003865g0150 Nicotiana tabacum
Nitab4.5_0009292g0010 Nicotiana tabacum
Oeu005407.1 Olea europaea
Oeu007830.1 Olea europaea
Oeu019314.1 Olea europaea
Oeu024909.1 Olea europaea
Oeu037372.1 Olea europaea
Oeu051068.1 Olea europaea
Os08g0390000 Oryza sativa ssp. japonica
Os09g0346400 Oryza sativa ssp. japonica
Peaxi162Scf00000g03512 Petunia axillaris
Peaxi162Scf00027g00219 Petunia axillaris
Peaxi162Scf00027g02110 Petunia axillaris
Peaxi162Scf00069g01513 Petunia axillaris
PGR031G0680 Punica granatum
PGR042G0540 Punica granatum
PGR042G0857 Punica granatum
PGR042G3221 Punica granatum
PGR042G3749 Punica granatum
PGR083G2752 Punica granatum
PGSC0003DMG400012445 Solanum tuberosum
PGSC0003DMG400015320 Solanum tuberosum
Phvul.005G072500 Phaseolus vulgaris
Phvul.011G158400 Phaseolus vulgaris
Potri.001G399400 Populus trichocarpa
Potri.011G119700 Populus trichocarpa
Prupe.4G180600 Prunus persica
Psat4g153160 Pisum sativum
Psat5g243840 Pisum sativum
Psat5g272680 Pisum sativum
Psat5g272720 Pisum sativum
Psat5g272760 Pisum sativum
PSO063G1874 Papaver somniferum
PSO170G1596 Papaver somniferum
PSO210G3780 Papaver somniferum
PSO210G5832 Papaver somniferum
PSO210G5847 Papaver somniferum
PSO407G0325 Papaver somniferum
PSO541G4007 Papaver somniferum
PSO675G3374 Papaver somniferum
PSO782G1030 Papaver somniferum
PSO832G2732 Papaver somniferum
QL08p022033 Quercus lobata
RcHm_v2.0_Chr4g0413651 Rosa chinensis
RcHm_v2.0_Chr5g0033471 Rosa chinensis
RcHm_v2.0_Chr5g0033481 Rosa chinensis
RcHm_v2.0_Chr5g0033561 Rosa chinensis
Rhsim04G0021400 Rhododendron simsii
Sabra11G0104100 Salix brachista
Sabra16G0261900 Salix brachista
SalBow7G0487 Salvia bowleyana
SalBow7G4171 Salvia bowleyana
Sc03g0010070 Simmondsia chinensis
Sc19g0007810 Simmondsia chinensis
Sed0016612 Sechium edule
Sed0025666 Sechium edule
Sed0026326 Sechium edule
SEGI_21183 Sequoiadendron giganteum
SEGI_30217 Sequoiadendron giganteum
SGA_v2.0_scaffold34G13814 Striga asiatica
SGA_v2.0_scaffold73G24261 Striga asiatica
SHI21648 Sapria himalayana
SMO367G1162 Selaginella moellendorffii
Solyc12g013860.2 Solanum lycopersicum
Sopen07g031290 Solanum pennellii
Sopen12g007180 Solanum pennellii
Sp1g39660 Schrenkiella parvula
Sp3g13520 Schrenkiella parvula
Sp6g15880 Schrenkiella parvula
Sp7g25440 Schrenkiella parvula
TAR624G0863 Trochodendron aralioides
TAR624G0920 Trochodendron aralioides
TAR626G1709 Trochodendron aralioides
TAR627G1018 Trochodendron aralioides
TAR671G0001 Trochodendron aralioides
THA.LOC104810465 Tarenaya hassleriana
THA.LOC104811864 Tarenaya hassleriana
THA.LOC104813390 Tarenaya hassleriana
THA.LOC104818081 Tarenaya hassleriana
Thecc.07G090000 Theobroma cacao
Thecc.07G186100 Theobroma cacao
Thhalv10011536m.g Eutrema salsugineum
Thhalv10013033m.g Eutrema salsugineum
Thhalv10020348m.g Eutrema salsugineum
Thhalv10027051m.g Eutrema salsugineum
TPR.G39006 Trifolium pratense
TPR.G6407 Trifolium pratense
TPR.G6462 Trifolium pratense
TPR.G6467 Trifolium pratense
TPR.G6481 Trifolium pratense
TWI38G1694 Tripterygium wilfordii
TWI39G0142 Tripterygium wilfordii
unitig_747.g21572 Utricularia gibba
unitig_747.g21573 Utricularia gibba
vmacro09530 Vaccinium macrocarpon
VMungo0251G0394 Vigna mungo
VMungo0251G0735 Vigna mungo
VMungo1080G0407 Vigna mungo
VMungo1127G2095 Vigna mungo
Zm00001eb098450 Zea mays
Zm00001eb310480 Zea mays

User provided reference genes

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