Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p37950 Brassica napus
A05p33340 Brassica napus
A10p28570 Brassica napus
Aa31LG3G18450 Aethionema arabicum
Aa31LG8G3280 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3587 Anthoceros agrestis
Actinidia01078 Actinidia chinensis
Actinidia10445 Actinidia chinensis
Actinidia22660 Actinidia chinensis
Ah.02g114210 Amaranthus hybridus
Ah.11g047450 Amaranthus hybridus
AL3G28830 Arabidopsis lyrata
AL6G18470 Arabidopsis lyrata
Aqoxy3G03735 Aquilegia oxysepala
Aqoxy5G01158 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.369VWG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CFM630 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F85LVX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FF7FBD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H2CSA7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I7FZVG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VH7VLJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XB7AYI Arachis hypogaea
AT3G16150 Arabidopsis thaliana
AT5G08100 Arabidopsis thaliana
ATR0753G006 Amborella trichopoda
ATR0807G016 Amborella trichopoda
ATR0827G117 Amborella trichopoda
Atru.chr13.753 Acer truncatum
Atru.chr9.481 Acer truncatum
AUR62032135 Chenopodium quinoa
AUR62039670 Chenopodium quinoa
AUR62041664 Chenopodium quinoa
BcaB06g25708 Brassica carinata
BcaB08g37288 Brassica carinata
BcaB08g37289 Brassica carinata
BcaB08g37292 Brassica carinata
BolC1t04781H Brassica oleracea
BolC5t33783H Brassica oleracea
BolC9t59632H Brassica oleracea
BraA01t03855Z Brassica rapa
BraA05t22160Z Brassica rapa
BraA10t44906Z Brassica rapa
C01p48170 Brassica napus
C05p50340 Brassica napus
C09p68850 Brassica napus
C09p68860 Brassica napus
CAN.G1592.8 Capsicum annuum
CAN.G1621.1 Capsicum annuum
CAN.G587.58 Capsicum annuum
CANSAT80G0929 Cannabis sativa
CANSAT80G0948 Cannabis sativa
CANSAT80G1227 Cannabis sativa
CARHR091310 Cardamine hirsuta
CARHR205090 Cardamine hirsuta
Carub.0003s1589 Capsella rubella
Ca_13255_v3 Cicer arietinum L.
Ca_15931_v3 Cicer arietinum L.
Ca_21757_v3 Cicer arietinum L.
Ca_25803_v3 Cicer arietinum L.
Cc04_g08310 Coffea canephora
Cc10_g04900 Coffea canephora
CDE04G0119 Ceratophyllum demersum
CDE04G1873 Ceratophyllum demersum
CDE04G3325 Ceratophyllum demersum
CDE06G1069 Ceratophyllum demersum
CDE06G1515 Ceratophyllum demersum
CDE07G1953 Ceratophyllum demersum
Cfa001644 Carpinus fangiana
Cfa018054 Carpinus fangiana
Ciclev10001812m.g Citrus clementina
Ciclev10003332m.g Citrus clementina
Ciclev10009972m.g Citrus clementina
Ciclev10021205m.g Citrus clementina
Ciclev10023475m.g Citrus clementina
CiPaw.15G051700 Carya illinoinensis
CiPaw.15G113400 Carya illinoinensis
CiPaw.15G113600 Carya illinoinensis
CiPaw.16G037500 Carya illinoinensis
ClCG03G016910 Citrullus lanatus
ClCG05G020240 Citrullus lanatus
COL.COLO4_10113 Corchorus olitorius
COL.COLO4_27486 Corchorus olitorius
COL.COLO4_27489 Corchorus olitorius
Cpa.g.sc21.150 Carica papaya
Cpa.g.sc3.238 Carica papaya
CsaV3_1G039010 Cucumis sativus L.
CsaV3_4G034720 Cucumis sativus L.
CSS0012895 Camellia sinensis var. sinensis
CSS0013573 Camellia sinensis var. sinensis
CSS0018562 Camellia sinensis var. sinensis
CSS0028325 Camellia sinensis var. sinensis
CSS0037539 Camellia sinensis var. sinensis
CSS0039215 Camellia sinensis var. sinensis
DCAR_009891 Daucus carota
Dinv07971 Davidia involucrata
Dinv17457 Davidia involucrata
Dinv31033 Davidia involucrata
Dinv31071 Davidia involucrata
Dinv35923 Davidia involucrata
Duzib041G0065 Durio zibethinus
Duzib068G0798 Durio zibethinus
Duzib093G0066 Durio zibethinus
Duzib116G0489 Durio zibethinus
Duzib205G0808 Durio zibethinus
ECA232G2038 Erigeron canadensis
ECA246G0806 Erigeron canadensis
ECA247G1579 Erigeron canadensis
EL10Ac5g11187 Beta vulgaris
EL10As7g23783 Beta vulgaris
Eucgr.B00637 Eucalyptus grandis
Eucgr.B00638 Eucalyptus grandis
Eucgr.F02300 Eucalyptus grandis
FAN08G2796 Fragaria x ananassa
FAN15G2708 Fragaria x ananassa
FAN18G2660 Fragaria x ananassa
FAN20G1165 Fragaria x ananassa
FAN24G1096 Fragaria x ananassa
FAN27G3320 Fragaria x ananassa
FvH4_2g33770 Fragaria vesca
FvH4_5g13420 Fragaria vesca
Glyma.04G042100 Glycine max
Glyma.05G018300 Glycine max
Glyma.06G043000 Glycine max
Glyma.14G086300 Glycine max
Glyma.17G238200 Glycine max
Gohir.A05G206000 Gossypium hirsutum
Gohir.A05G262100 Gossypium hirsutum
Gohir.A05G262200 Gossypium hirsutum
Gohir.A06G021400 Gossypium hirsutum
Gohir.A11G033900 Gossypium hirsutum
Gohir.A12G184100 Gossypium hirsutum
Gohir.A12G184150 Gossypium hirsutum
Gohir.A12G184200 Gossypium hirsutum
Gohir.D02G090200 Gossypium hirsutum
Gohir.D05G209300 Gossypium hirsutum
Gohir.D05G264400 Gossypium hirsutum
Gohir.D06G019081 Gossypium hirsutum
Gohir.D11G037300 Gossypium hirsutum
Gohir.D12G186900 Gossypium hirsutum
Gohir.D12G187000 Gossypium hirsutum
Gorai.005G101000 Gossypium raimondii
Gorai.007G040100 Gossypium raimondii
Gorai.008G200400 Gossypium raimondii
Gorai.009G215700 Gossypium raimondii
Gorai.009G276200 Gossypium raimondii
Gorai.010G023000 Gossypium raimondii
GSVIVG01008150001 Vitis vinifera
GSVIVG01009430001 Vitis vinifera
HanXRQChr05g0154251 Helianthus annuus
HanXRQChr09g0267401 Helianthus annuus
HanXRQChr10g0309651 Helianthus annuus
HanXRQChr11g0327821 Helianthus annuus
HanXRQChr11g0345771 Helianthus annuus
Haze_18075 Corylus avellana
Haze_18508 Corylus avellana
Hma1.2p1_0240F.1_g100290 Hydrangea macrophylla
Hma1.2p1_2037F.1_g312000 Hydrangea macrophylla
Hma1.2p1_3034F.1_g331900 Hydrangea macrophylla
HPP92_001842 Vanilla planifolia
HPP92_004764 Vanilla planifolia
Hund05329 Selenicereus undatus
Hund09952 Selenicereus undatus
Hund09953 Selenicereus undatus
Lalb_Chr11g0062721 Lupinus albus
Lalb_Chr13g0302691 Lupinus albus
Lalb_Chr14g0368381 Lupinus albus
Lalb_Chr14g0368391 Lupinus albus
Lalb_Chr22g0354871 Lupinus albus
Lalb_Chr23g0267301 Lupinus albus
Lj1g0023318 Lotus japonicus
Lj2C115T7 Lonicera japonica
Lj4C64T5 Lonicera japonica
Lj4g0024769 Lotus japonicus
Lj5C137T4 Lonicera japonica
Lj5g0007007 Lotus japonicus
Lsat_1_v5_gn_1_22601 Lactuca sativa
Lsat_1_v5_gn_4_128420 Lactuca sativa
Lsat_1_v5_gn_5_23420 Lactuca sativa
Manes.05G177500 Manihot esculenta
Manes.06G081300 Manihot esculenta
Manes.18G041700 Manihot esculenta
Mapoly0129s0008 Marchantia polymorpha
MBI19_g00143_MAGBIO Magnolia biondii
MBI19_g42661_MAGBIO Magnolia biondii
MD06G1205300 Malus domestica
MD06G1205500 Malus domestica
MD08G1092600 Malus domestica
MD15G1077000 Malus domestica
Medtr1g018760 Medicago truncatula
Medtr1g094030 Medicago truncatula
Medtr3g102370 Medicago truncatula
Medtr4g109900 Medicago truncatula
Medtr4g109920 Medicago truncatula
MELO3C001609.2 Cucumis melo
MELO3C015327.2 Cucumis melo
MELO3C016787.2 Cucumis melo
Migut.D01617 Erythranthe guttata
Migut.N02724 Erythranthe guttata
Migut.N02725 Erythranthe guttata
MSTRG.22250 Avicennia marina
MSTRG.4494 Avicennia marina
Nitab4.5_0000412g0050 Nicotiana tabacum
Nitab4.5_0001984g0010 Nicotiana tabacum
Nitab4.5_0002449g0040 Nicotiana tabacum
Nitab4.5_0002467g0120 Nicotiana tabacum
Nitab4.5_0007505g0010 Nicotiana tabacum
Nitab4.5_0013901g0010 Nicotiana tabacum
Nn1g04721 Nelumbo nucifera
Nn4g22154 Nelumbo nucifera
Nn4g23531 Nelumbo nucifera
Nn5g30402 Nelumbo nucifera
Oeu054780.1 Olea europaea
Oeu057216.1 Olea europaea
Os03g0597600 Oryza sativa ssp. japonica
Os04g0650700 Oryza sativa ssp. japonica
Peaxi162Scf00013g00739 Petunia axillaris
Peaxi162Scf00017g03210 Petunia axillaris
Peaxi162Scf00017g03273 Petunia axillaris
Peaxi162Scf00017g03274 Petunia axillaris
Peaxi162Scf00229g01513 Petunia axillaris
PGR031G0753 Punica granatum
PGR083G1612 Punica granatum
PGSC0003DMG400004063 Solanum tuberosum
PGSC0003DMG400008000 Solanum tuberosum
PGSC0003DMG400024526 Solanum tuberosum
Phvul.001G025000 Phaseolus vulgaris
Phvul.003G182400 Phaseolus vulgaris
Phvul.009G067800 Phaseolus vulgaris
Potri.002G122900 Populus trichocarpa
Potri.012G063400 Populus trichocarpa
Potri.014G022900 Populus trichocarpa
Pp3c14_14930 Physcomitrium patens
Pp3c20_9560 Physcomitrium patens
Pp3c23_6900 Physcomitrium patens
Pp3c8_21770 Physcomitrium patens
Prupe.1G430400 Prunus persica
Prupe.5G209200 Prunus persica
Prupe.5G209700 Prunus persica
Psat0s3016g0160 Pisum sativum
Psat4g046120 Pisum sativum
Psat5g041480 Pisum sativum
Psat5g041520 Pisum sativum
Psat5g153200 Pisum sativum
Psat5g153240 Pisum sativum
Psat6g015280 Pisum sativum
Psat7g193440 Pisum sativum
PSO017G5470 Papaver somniferum
PSO063G1236 Papaver somniferum
PSO170G4310 Papaver somniferum
PSO210G4049 Papaver somniferum
PSO341G0001 Papaver somniferum
QL02p003868 Quercus lobata
QL10p020674 Quercus lobata
QL10p020694 Quercus lobata
RcHm_v2.0_Chr4g0445551 Rosa chinensis
RcHm_v2.0_Chr6g0308781 Rosa chinensis
RcHm_v2.0_Chr7g0183691 Rosa chinensis
Rhsim06G0055200 Rhododendron simsii
Rhsim08G0141600 Rhododendron simsii
Sabra12G0042000 Salix brachista
Sabra14G0015800 Salix brachista
SalBow6G5879 Salvia bowleyana
SalBow7G0639 Salvia bowleyana
SalBow7G2564 Salvia bowleyana
Sc02g0007560 Simmondsia chinensis
Sc12g0006890 Simmondsia chinensis
Sed0006992 Sechium edule
Sed0014399 Sechium edule
SEGI_01835 Sequoiadendron giganteum
SEGI_11372 Sequoiadendron giganteum
SEGI_13800 Sequoiadendron giganteum
SGA_v2.0_scaffold156G37297 Striga asiatica
SGA_v2.0_scaffold16G07824 Striga asiatica
SGA_v2.0_scaffold28G11789 Striga asiatica
SGA_v2.0_scaffold28G11791 Striga asiatica
SGA_v2.0_scaffold42G16057 Striga asiatica
SMO365G0073 Selaginella moellendorffii
Solyc03g114790.3 Solanum lycopersicum
Solyc04g078460.3 Solanum lycopersicum
Solyc06g069400.4 Solanum lycopersicum
Sopen03g033870 Solanum pennellii
Sopen04g032060 Solanum pennellii
Sopen06g026670 Solanum pennellii
Sp3g14510 Schrenkiella parvula
Sp6g34860 Schrenkiella parvula
TAR376G0351 Trochodendron aralioides
TAR628G0711 Trochodendron aralioides
TAR629G1447 Trochodendron aralioides
THA.LOC104818355 Tarenaya hassleriana
THA.LOC104825759 Tarenaya hassleriana
Thecc.03G107600 Theobroma cacao
Thecc.08G000700 Theobroma cacao
Thhalv10014145m.g Eutrema salsugineum
Thhalv10021131m.g Eutrema salsugineum
TPR.G2015 Trifolium pratense
TPR.G2026 Trifolium pratense
TPR.G20565 Trifolium pratense
TPR.G20568 Trifolium pratense
TPR.G3764 Trifolium pratense
TPR.G9791 Trifolium pratense
TWI56G0762 Tripterygium wilfordii
TWI81G0833 Tripterygium wilfordii
unitig_22.g6767 Utricularia gibba
unitig_26.g9334 Utricularia gibba
unitig_578.g15935 Utricularia gibba
vmacro17636 Vaccinium macrocarpon
vmacro21485 Vaccinium macrocarpon
vmacro23113 Vaccinium macrocarpon
VMungo0647G1902 Vigna mungo
VMungo1215G0661 Vigna mungo
VMungo1309G0485 Vigna mungo
VMungo1309G3060 Vigna mungo
Zm00001eb068280 Zea mays
Zm00001eb144460 Zea mays
Zm00001eb233010 Zea mays
Zm00001eb278900 Zea mays
Zm00001eb362310 Zea mays

User provided reference genes

Program Settings