Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p26620 Brassica napus
A09p36660 Brassica napus
Aa31LG4G12960 Aethionema arabicum
Aa31LG6G5820 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1332 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1441 Anthoceros agrestis
Actinidia12594 Actinidia chinensis
Actinidia30260 Actinidia chinensis
Actinidia39527 Actinidia chinensis
Actinidia39613 Actinidia chinensis
Ah.04g164120 Amaranthus hybridus
Ah.10g037710 Amaranthus hybridus
AL1G43640 Arabidopsis lyrata
AL5G21330 Arabidopsis lyrata
Aqoxy1G01966 Aquilegia oxysepala
Aqoxy4G01456 Aquilegia oxysepala
Aqoxy4G01457 Aquilegia oxysepala
Aqoxy4G01458 Aquilegia oxysepala
Aqoxy7G00975 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.42NQ5C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.57JFSU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HF5IIF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L1WIX7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LHXY5I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WU8RK2 Arachis hypogaea
AT1G29800 Arabidopsis thaliana
AT3G43230 Arabidopsis thaliana
ATR0127G016 Amborella trichopoda
ATR0317G106 Amborella trichopoda
Atru.chr10.137 Acer truncatum
Atru.chr10.1526 Acer truncatum
Atru.chr2.2044 Acer truncatum
AUR62009030 Chenopodium quinoa
AUR62019614 Chenopodium quinoa
AUR62023273 Chenopodium quinoa
AUR62037592 Chenopodium quinoa
AUR62039494 Chenopodium quinoa
BcaB02g10780 Brassica carinata
BcaB07g32568 Brassica carinata
BcaC01g02204 Brassica carinata
BcaC05g26995 Brassica carinata
BolC5t31579H Brassica oleracea
BolSC21t60257H Brassica oleracea
BraA06t25596Z Brassica rapa
BraA09t39185Z Brassica rapa
C03p67890 Brassica napus
C05p28550 Brassica napus
CAN.G411.32 Capsicum annuum
CAN.G457.1 Capsicum annuum
CANSAT35G1864 Cannabis sativa
CANSAT56G1081 Cannabis sativa
CARHR029180 Cardamine hirsuta
CARHR153450 Cardamine hirsuta
Carub.0001s2805 Capsella rubella
Carub.0005s0905 Capsella rubella
Ca_00480_v3 Cicer arietinum L.
Ca_21341_v3 Cicer arietinum L.
Ca_21342_v3 Cicer arietinum L.
Ca_21391_v3 Cicer arietinum L.
CBR_g3923 Chara braunii
Cc02_g15800 Coffea canephora
Cc06_g12740 Coffea canephora
CDE05G0513 Ceratophyllum demersum
CDE05G2033 Ceratophyllum demersum
CDE10G0421 Ceratophyllum demersum
CDE10G0892 Ceratophyllum demersum
CDE10G0895 Ceratophyllum demersum
Cfa001113 Carpinus fangiana
Cfa002935 Carpinus fangiana
Cfa019524 Carpinus fangiana
Cfa023153 Carpinus fangiana
Ciclev10008123m.g Citrus clementina
Ciclev10014889m.g Citrus clementina
Ciclev10024068m.g Citrus clementina
CiPaw.03G200000 Carya illinoinensis
CiPaw.10G103200 Carya illinoinensis
CiPaw.11G157500 Carya illinoinensis
ClCG03G007380 Citrullus lanatus
ClCG03G014740 Citrullus lanatus
COL.COLO4_17519 Corchorus olitorius
COL.COLO4_21202 Corchorus olitorius
COL.COLO4_31212 Corchorus olitorius
Cpa.g.sc77.47 Carica papaya
Cpa.g.sc82.60 Carica papaya
Cre03.g156250 Chlamydomonas reinhardtii
Cre16.g668550 Chlamydomonas reinhardtii
CsaV3_1G033000 Cucumis sativus L.
CsaV3_1G041420 Cucumis sativus L.
CSS0001022 Camellia sinensis var. sinensis
CSS0001054 Camellia sinensis var. sinensis
CSS0008239 Camellia sinensis var. sinensis
CSS0015290 Camellia sinensis var. sinensis
CSS0032410 Camellia sinensis var. sinensis
DCAR_011916 Daucus carota
DCAR_021030 Daucus carota
DCAR_024782 Daucus carota
DCAR_027969 Daucus carota
Dinv12736 Davidia involucrata
Dinv18385 Davidia involucrata
Dinv42434 Davidia involucrata
Duzib150G1539 Durio zibethinus
Duzib160G0500 Durio zibethinus
Duzib168G1231 Durio zibethinus
Duzib187G2005 Durio zibethinus
Duzib235G1261 Durio zibethinus
ECA234G4167 Erigeron canadensis
ECA240G2919 Erigeron canadensis
ECA248G0844 Erigeron canadensis
EL10Ac2g04537 Beta vulgaris
EL10Ac4g08393 Beta vulgaris
Eucgr.B00488 Eucalyptus grandis
Eucgr.B00489 Eucalyptus grandis
Eucgr.C00650 Eucalyptus grandis
Eucgr.C03194 Eucalyptus grandis
Eucgr.D00427 Eucalyptus grandis
Eucgr.H03489 Eucalyptus grandis
Eucgr.L00277 Eucalyptus grandis
FAN11G3465 Fragaria x ananassa
FAN16G1624 Fragaria x ananassa
FAN19G0157 Fragaria x ananassa
FAN21G2718 Fragaria x ananassa
FAN21G2800 Fragaria x ananassa
FAN23G2962 Fragaria x ananassa
FAN25G3230 Fragaria x ananassa
FAN26G2217 Fragaria x ananassa
FAN26G2927 Fragaria x ananassa
FAN28G0568 Fragaria x ananassa
FAN28G1884 Fragaria x ananassa
FvH4_1g09450 Fragaria vesca
FvH4_3g07140 Fragaria vesca
Glyma.13G114700 Glycine max
Glyma.13G225400 Glycine max
Glyma.15G086900 Glycine max
Glyma.17G045300 Glycine max
Gohir.A01G052500 Gossypium hirsutum
Gohir.A05G036300 Gossypium hirsutum
Gohir.A06G198900 Gossypium hirsutum
Gohir.A10G033700 Gossypium hirsutum
Gohir.A13G188900 Gossypium hirsutum
Gohir.D01G041900 Gossypium hirsutum
Gohir.D05G037800 Gossypium hirsutum
Gohir.D06G206200 Gossypium hirsutum
Gohir.D10G034400 Gossypium hirsutum
Gohir.D12G079502 Gossypium hirsutum
Gohir.D13G195900 Gossypium hirsutum
Gorai.002G052500 Gossypium raimondii
Gorai.008G088000 Gossypium raimondii
Gorai.009G038300 Gossypium raimondii
Gorai.010G240600 Gossypium raimondii
Gorai.011G036200 Gossypium raimondii
Gorai.013G222000 Gossypium raimondii
GSVIVG01014153001 Vitis vinifera
GSVIVG01015009001 Vitis vinifera
GSVIVG01021271001 Vitis vinifera
HanXRQChr12g0354241 Helianthus annuus
HanXRQChr13g0389691 Helianthus annuus
Haze_05367 Corylus avellana
Haze_09261 Corylus avellana
Haze_26073 Corylus avellana
Hma1.2p1_0050F.1_g028970 Hydrangea macrophylla
Hma1.2p1_1650F.1_g295700 Hydrangea macrophylla
HPP92_009816 Vanilla planifolia
HPP92_026315 Vanilla planifolia
Hund08904 Selenicereus undatus
Hund10461 Selenicereus undatus
Lalb_Chr07g0181431 Lupinus albus
Lalb_Chr08g0232841 Lupinus albus
Lalb_Chr12g0200361 Lupinus albus
Lalb_Chr15g0086441 Lupinus albus
Lalb_Chr18g0054891 Lupinus albus
Lj1A1177G102 Lonicera japonica
Lj4A921G23 Lonicera japonica
Lj4g0006844 Lotus japonicus
Lj6g0003399 Lotus japonicus
Lj6g0020289 Lotus japonicus
Lj7A693T92 Lonicera japonica
Lj8C146G10 Lonicera japonica
Lsat_1_v5_gn_1_112021 Lactuca sativa
Lsat_1_v5_gn_5_138741 Lactuca sativa
Lsat_1_v5_gn_9_100520 Lactuca sativa
Manes.03G045000 Manihot esculenta
Manes.16G043600 Manihot esculenta
Manes.16G090100 Manihot esculenta
Manes.17G060900 Manihot esculenta
Mapoly0037s0060 Marchantia polymorpha
MBI06_g16572_MAGBIO Magnolia biondii
MBI07_g00469_MAGBIO Magnolia biondii
MBI16_g32004_MAGBIO Magnolia biondii
MCO13G081 Micromonas commoda
MD00G1007600 Malus domestica
MD02G1102900 Malus domestica
MD10G1274100 Malus domestica
MD15G1224000 Malus domestica
Medtr2g016870 Medicago truncatula
Medtr2g044220 Medicago truncatula
Medtr4g124600 Medicago truncatula
MELO3C002682.2 Cucumis melo
MELO3C015554.2 Cucumis melo
Migut.H02017 Erythranthe guttata
Migut.J00877 Erythranthe guttata
Migut.M00996 Erythranthe guttata
MSTRG.12863 Avicennia marina
MSTRG.16176 Avicennia marina
MSTRG.19425 Avicennia marina
MSTRG.5979 Avicennia marina
MSTRG.7438 Avicennia marina
Nitab4.5_0001778g0170 Nicotiana tabacum
Nitab4.5_0002665g0020 Nicotiana tabacum
Nitab4.5_0007964g0010 Nicotiana tabacum
Nitab4.5_0012428g0010 Nicotiana tabacum
Nn3g21059 Nelumbo nucifera
Nn5g27223 Nelumbo nucifera
Oeu000274.1 Olea europaea
Oeu005378.1 Olea europaea
Oeu040930.1 Olea europaea
Os02g0233100 Oryza sativa ssp. japonica
Os06g0552400 Oryza sativa ssp. japonica
Os07g0272400 Oryza sativa ssp. japonica
Os07g0616900 Oryza sativa ssp. japonica
Peaxi162Scf00112g01216 Petunia axillaris
Peaxi162Scf01184g00149 Petunia axillaris
PGR044G1546 Punica granatum
PGR083G1679 Punica granatum
PGSC0003DMG400028413 Solanum tuberosum
PGSC0003DMG402015931 Solanum tuberosum
Phvul.003G127100 Phaseolus vulgaris
Phvul.006G171400 Phaseolus vulgaris
Potri.004G062500 Populus trichocarpa
Potri.006G135800 Populus trichocarpa
Potri.011G071900 Populus trichocarpa
Potri.011G106700 Populus trichocarpa
Potri.018G064200 Populus trichocarpa
Pp3c21_290 Physcomitrium patens
PRCOL_00006161 Prasinoderma coloniale
Prupe.4G068300 Prunus persica
Prupe.7G191500 Prunus persica
Psat1g138520 Pisum sativum
Psat1g194080 Pisum sativum
Psat4g019360 Pisum sativum
PSO104G0214 Papaver somniferum
PSO421G0695 Papaver somniferum
PSO675G4536 Papaver somniferum
QL01p030602 Quercus lobata
QL05p050230 Quercus lobata
QL05p088904 Quercus lobata
QL05p088929 Quercus lobata
QL05p089331 Quercus lobata
QL11p003071 Quercus lobata
QL11p003173 Quercus lobata
QL93p0243_0006 Quercus lobata
RcHm_v2.0_Chr2g0096001 Rosa chinensis
RcHm_v2.0_Chr2g0096261 Rosa chinensis
RcHm_v2.0_Chr2g0096271 Rosa chinensis
RcHm_v2.0_Chr5g0011981 Rosa chinensis
Rhsim05G0001800 Rhododendron simsii
Rhsim06G0210900 Rhododendron simsii
Sabra04G0041400 Salix brachista
Sabra06G0106400 Salix brachista
Sabra11G0056300 Salix brachista
Sabra11G0059600 Salix brachista
Sabra11G0095000 Salix brachista
SalBow6G6381 Salvia bowleyana
SalBow7G1905 Salvia bowleyana
SalBow8G4269 Salvia bowleyana
Sc03g0010630 Simmondsia chinensis
Sc08g0009180 Simmondsia chinensis
Sed0010844 Sechium edule
Sed0011731 Sechium edule
Sed0012649 Sechium edule
Sed0020088 Sechium edule
SEGI_02594 Sequoiadendron giganteum
SEGI_04667 Sequoiadendron giganteum
SEGI_16821 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00100 Striga asiatica
SGA_v2.0_scaffold281G46921 Striga asiatica
SHI27984 Sapria himalayana
SMO174G0186 Selaginella moellendorffii
SMO348G0016 Selaginella moellendorffii
Solyc02g071980.3 Solanum lycopersicum
Solyc07g017500.3 Solanum lycopersicum
Sopen02g020960 Solanum pennellii
Sopen07g006290 Solanum pennellii
Sp1g25700 Schrenkiella parvula
Sp5g18460 Schrenkiella parvula
TAR381G1625 Trochodendron aralioides
TAR521G0002 Trochodendron aralioides
TAR624G0129 Trochodendron aralioides
TAR626G0435 Trochodendron aralioides
TAR627G0761 Trochodendron aralioides
TAR629G0817 Trochodendron aralioides
THA.LOC104810979 Tarenaya hassleriana
THA.LOC104812661 Tarenaya hassleriana
THA.LOC104815071 Tarenaya hassleriana
Thecc.06G163800 Theobroma cacao
Thecc.07G122000 Theobroma cacao
Thecc.09G069800 Theobroma cacao
Thhalv10002509m.g Eutrema salsugineum
Thhalv10007421m.g Eutrema salsugineum
TPR.G12553 Trifolium pratense
TPR.G29618 Trifolium pratense
TPR.G4547 Trifolium pratense
TWI09G0806 Tripterygium wilfordii
TWI32G0192 Tripterygium wilfordii
TWI34G1869 Tripterygium wilfordii
TWI39G0002 Tripterygium wilfordii
unitig_748.g7824 Utricularia gibba
unitig_749.g13542 Utricularia gibba
unitig_749.g14187 Utricularia gibba
vmacro11961 Vaccinium macrocarpon
vmacro16056 Vaccinium macrocarpon
vmacro17075 Vaccinium macrocarpon
VMungo0540G2240 Vigna mungo
VMungo1215G1978 Vigna mungo
Zm00001eb204850 Zea mays
Zm00001eb239130 Zea mays
Zm00001eb304770 Zea mays
Zm00001eb327510 Zea mays
Zm00001eb384810 Zea mays

User provided reference genes

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