Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p24190 Brassica napus
A04p17300 Brassica napus
A07p16910 Brassica napus
A09p43350 Brassica napus
A09p57230 Brassica napus
Aa31LG1G15550 Aethionema arabicum
Aa31LG4G18570 Aethionema arabicum
Aa31LG7G14020 Aethionema arabicum
Actinidia12051 Actinidia chinensis
Actinidia16482 Actinidia chinensis
Actinidia36495 Actinidia chinensis
Ah.02g124300 Amaranthus hybridus
Ah.03g139610 Amaranthus hybridus
AL4G12320 Arabidopsis lyrata
AL5G30460 Arabidopsis lyrata
AL8G44340 Arabidopsis lyrata
Aqoxy6G01309 Aquilegia oxysepala
Aqoxy6G01521 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.31X1J3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6LZ9WW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HI299V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JB98L2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KYX91V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R7X80S Arachis hypogaea
AT2G22790 Arabidopsis thaliana
AT3G50340 Arabidopsis thaliana
AT5G67020 Arabidopsis thaliana
ATR0009G029 Amborella trichopoda
ATR0767G224 Amborella trichopoda
Atru.chr3.1091 Acer truncatum
Atru.chr3.326 Acer truncatum
AUR62001927 Chenopodium quinoa
AUR62003883 Chenopodium quinoa
AUR62007964 Chenopodium quinoa
BcaB01g00624 Brassica carinata
BcaB05g23211 Brassica carinata
BcaB06g27838 Brassica carinata
BcaB06g27839 Brassica carinata
BcaC02g08603 Brassica carinata
BcaC06g34778 Brassica carinata
BcaC06g34779 Brassica carinata
BcaC07g39493 Brassica carinata
BcaC07g41023 Brassica carinata
BcaC07g41024 Brassica carinata
BcaC09g50022 Brassica carinata
BolC1t02932H Brassica oleracea
BolC4t26785H Brassica oleracea
BolC7t42993H Brassica oleracea
BolC8t50159H Brassica oleracea
BolC8t51595H Brassica oleracea
BraA01t02331Z Brassica rapa
BraA04t17358Z Brassica rapa
BraA07t29417Z Brassica rapa
BraA09t39804Z Brassica rapa
BraA09t41116Z Brassica rapa
C01p29900 Brassica napus
C04p52110 Brassica napus
C07p24720 Brassica napus
C07p24730 Brassica napus
C08p25380 Brassica napus
C08p40270 Brassica napus
CAN.G252.5 Capsicum annuum
CAN.G660.8 Capsicum annuum
CANSAT01G0818 Cannabis sativa
CANSAT01G2701 Cannabis sativa
CARHR114070 Cardamine hirsuta
CARHR159800 Cardamine hirsuta
CARHR280640 Cardamine hirsuta
Carub.0004s0192 Capsella rubella
Carub.0005s1665 Capsella rubella
Carub.0008s2748 Capsella rubella
Ca_22163_v3 Cicer arietinum L.
Ca_24662_v3 Cicer arietinum L.
Ca_24769_v3 Cicer arietinum L.
Cc07_g06000 Coffea canephora
CDE01G0055 Ceratophyllum demersum
CDE03G0206 Ceratophyllum demersum
CDE04G2094 Ceratophyllum demersum
CDE04G2505 Ceratophyllum demersum
CDE08G0082 Ceratophyllum demersum
CDE08G1058 Ceratophyllum demersum
Cfa004024 Carpinus fangiana
Cfa006801 Carpinus fangiana
Ciclev10025785m.g Citrus clementina
Ciclev10025875m.g Citrus clementina
CiPaw.01G018000 Carya illinoinensis
CiPaw.02G008200 Carya illinoinensis
CiPaw.07G040100 Carya illinoinensis
ClCG01G016830 Citrullus lanatus
ClCG01G017960 Citrullus lanatus
ClCG02G005190 Citrullus lanatus
ClCG02G012510 Citrullus lanatus
COL.COLO4_11417 Corchorus olitorius
COL.COLO4_11650 Corchorus olitorius
Cpa.g.sc129.45 Carica papaya
Cpa.g.sc55.147 Carica papaya
CsaV3_2G016640 Cucumis sativus L.
CsaV3_6G043270 Cucumis sativus L.
CsaV3_6G044490 Cucumis sativus L.
CSS0014053 Camellia sinensis var. sinensis
CSS0045673 Camellia sinensis var. sinensis
DCAR_010774 Daucus carota
DCAR_025734 Daucus carota
Dinv30127 Davidia involucrata
Dinv39847 Davidia involucrata
Duzib147G0327 Durio zibethinus
Duzib147G0431 Durio zibethinus
Duzib187G0412 Durio zibethinus
Duzib187G1344 Durio zibethinus
ECA232G3993 Erigeron canadensis
ECA238G0343 Erigeron canadensis
EL10Ac2g02909 Beta vulgaris
EL10Ac6g15743 Beta vulgaris
Eucgr.H02035 Eucalyptus grandis
Eucgr.I00637 Eucalyptus grandis
Eucgr.I00924 Eucalyptus grandis
FAN19G0329 Fragaria x ananassa
FAN19G2882 Fragaria x ananassa
FAN23G0936 Fragaria x ananassa
FAN23G2320 Fragaria x ananassa
FAN26G1567 Fragaria x ananassa
FAN26G2318 Fragaria x ananassa
FAN28G1260 Fragaria x ananassa
FAN28G2907 Fragaria x ananassa
FvH4_1g16070 Fragaria vesca
FvH4_1g18640 Fragaria vesca
Glyma.01G186100 Glycine max
Glyma.01G197300 Glycine max
Glyma.05G095666 Glycine max
Glyma.11G044400 Glycine max
Glyma.11G055900 Glycine max
Glyma.17G174600 Glycine max
Gohir.A02G147900 Gossypium hirsutum
Gohir.A02G157200 Gossypium hirsutum
Gohir.A11G192500 Gossypium hirsutum
Gohir.A11G210600 Gossypium hirsutum
Gohir.A12G070900 Gossypium hirsutum
Gohir.D03G023700 Gossypium hirsutum
Gohir.D03G032500 Gossypium hirsutum
Gohir.D11G199200 Gossypium hirsutum
Gohir.D11G212500 Gossypium hirsutum
Gohir.D12G069400 Gossypium hirsutum
Gorai.003G025200 Gossypium raimondii
Gorai.003G034100 Gossypium raimondii
Gorai.007G213400 Gossypium raimondii
Gorai.007G228500 Gossypium raimondii
Gorai.008G076000 Gossypium raimondii
GSVIVG01022129001 Vitis vinifera
HanXRQChr07g0203781 Helianthus annuus
HanXRQChr09g0263831 Helianthus annuus
HanXRQChr15g0490521 Helianthus annuus
Haze_03959 Corylus avellana
Haze_05277 Corylus avellana
Haze_10957 Corylus avellana
Haze_15397 Corylus avellana
Hma1.2p1_1147F.1_g261550 Hydrangea macrophylla
Hma1.2p1_1705F.1_g298390 Hydrangea macrophylla
HPP92_016719 Vanilla planifolia
HPP92_022489 Vanilla planifolia
Lalb_Chr05g0213891 Lupinus albus
Lalb_Chr09g0323191 Lupinus albus
Lalb_Chr16g0378551 Lupinus albus
Lj2g0008573 Lotus japonicus
Lj2g0024764 Lotus japonicus
Lj2P425T23 Lonicera japonica
Lj4C149T5 Lonicera japonica
Lj4C149T6 Lonicera japonica
Lj4g0019433 Lotus japonicus
Lj4P170T16 Lonicera japonica
Lj7A69T48 Lonicera japonica
Lsat_1_v5_gn_2_81601 Lactuca sativa
Lsat_1_v5_gn_4_166281 Lactuca sativa
Manes.12G106900 Manihot esculenta
Manes.12G119400 Manihot esculenta
Manes.13G106600 Manihot esculenta
Manes.13G124200 Manihot esculenta
Mapoly1620s0002 Marchantia polymorpha
MBI03_g13471_MAGBIO Magnolia biondii
MBI16_g16854_MAGBIO Magnolia biondii
MD02G1172200 Malus domestica
MD02G1194000 Malus domestica
MD15G1284400 Malus domestica
MD15G1304100 Malus domestica
Medtr5g014810 Medicago truncatula
Medtr5g017410 Medicago truncatula
MELO3C000152.2 Cucumis melo
MELO3C020873.2 Cucumis melo
Migut.H00310 Erythranthe guttata
Migut.H00432 Erythranthe guttata
Migut.K00766 Erythranthe guttata
MSTRG.15388 Avicennia marina
MSTRG.23745 Avicennia marina
MSTRG.2795 Avicennia marina
MSTRG.2884 Avicennia marina
MSTRG.3425 Avicennia marina
MSTRG.3493 Avicennia marina
Nitab4.5_0000036g0300 Nicotiana tabacum
Nitab4.5_0002016g0100 Nicotiana tabacum
Nitab4.5_0002440g0020 Nicotiana tabacum
Nitab4.5_0006354g0010 Nicotiana tabacum
Nn1g01222 Nelumbo nucifera
Nn1g09381 Nelumbo nucifera
Nn2g14286 Nelumbo nucifera
Nn5g30712 Nelumbo nucifera
Nn6g32058 Nelumbo nucifera
Oeu018957.1 Olea europaea
Oeu031526.1 Olea europaea
Oeu031527.1 Olea europaea
Oeu031528.1 Olea europaea
Oeu031953.1 Olea europaea
Oeu031954.1 Olea europaea
Os03g0396000 Oryza sativa ssp. japonica
Os03g0677475 Oryza sativa ssp. japonica
Os08g0472400 Oryza sativa ssp. japonica
Os09g0456700 Oryza sativa ssp. japonica
Peaxi162Scf00118g00127 Petunia axillaris
Peaxi162Scf00118g01312 Petunia axillaris
Peaxi162Scf00118g01313 Petunia axillaris
Peaxi162Scf00450g00035 Petunia axillaris
Peaxi162Scf00943g00003 Petunia axillaris
PGR004G1935 Punica granatum
PGR004G2617 Punica granatum
PGR102G1838 Punica granatum
PGSC0003DMG400004041 Solanum tuberosum
PGSC0003DMG400010402 Solanum tuberosum
Phvul.002G008100 Phaseolus vulgaris
Phvul.002G018800 Phaseolus vulgaris
Phvul.003G243900 Phaseolus vulgaris
Potri.005G138300 Populus trichocarpa
Potri.007G008900 Populus trichocarpa
Potri.007G044200 Populus trichocarpa
Pp3c10_11830 Physcomitrium patens
Pp3c23_14360 Physcomitrium patens
Pp3c24_1500 Physcomitrium patens
Prupe.6G212900 Prunus persica
Prupe.7G133200 Prunus persica
Psat0s1281g0040 Pisum sativum
Psat0s791g0040 Pisum sativum
Psat2g167200 Pisum sativum
PSO170G6176 Papaver somniferum
PSO210G1107 Papaver somniferum
PSO541G0340 Papaver somniferum
PSO541G4191 Papaver somniferum
PSO675G7228 Papaver somniferum
QL06p038145 Quercus lobata
QL06p041362 Quercus lobata
QL11p056367 Quercus lobata
RcHm_v2.0_Chr2g0105691 Rosa chinensis
RcHm_v2.0_Chr2g0109461 Rosa chinensis
Rhsim08G0100300 Rhododendron simsii
Rhsim10G0087200 Rhododendron simsii
Rhsim10G0117500 Rhododendron simsii
Sabra05G0112200 Salix brachista
Sabra07G0006900 Salix brachista
Sabra07G0038900 Salix brachista
SalBow1G1545 Salvia bowleyana
SalBow3G1317 Salvia bowleyana
SalBow3G1471 Salvia bowleyana
SalBow5G0755 Salvia bowleyana
SalBow5G4513 Salvia bowleyana
Sc03g0001590 Simmondsia chinensis
Sed0000549 Sechium edule
Sed0009898 Sechium edule
Sed0011926 Sechium edule
Sed0013148 Sechium edule
SEGI_10747 Sequoiadendron giganteum
SEGI_12088 Sequoiadendron giganteum
SEGI_36257 Sequoiadendron giganteum
SGA_v2.0_scaffold121G33090 Striga asiatica
SGA_v2.0_scaffold15G07304 Striga asiatica
SGA_v2.0_scaffold31G12883 Striga asiatica
SGA_v2.0_scaffold94G28535 Striga asiatica
SMO198G0091 Selaginella moellendorffii
SMO259G0009 Selaginella moellendorffii
SMO364G0676 Selaginella moellendorffii
Solyc02g063510.1 Solanum lycopersicum
Solyc02g090870.1 Solanum lycopersicum
Sopen02g014590 Solanum pennellii
Sopen02g035520 Solanum pennellii
Sp2g29650 Schrenkiella parvula
Sp4g01800 Schrenkiella parvula
Sp5g11850 Schrenkiella parvula
TAR381G1053 Trochodendron aralioides
TAR381G1348 Trochodendron aralioides
TAR625G0453 Trochodendron aralioides
TAR625G1203 Trochodendron aralioides
TAR628G1162 Trochodendron aralioides
THA.LOC104804192 Tarenaya hassleriana
THA.LOC104821255 Tarenaya hassleriana
THA.LOC104824931 Tarenaya hassleriana
THA.LOC104827141 Tarenaya hassleriana
Thecc.01G056400 Theobroma cacao
Thecc.01G080100 Theobroma cacao
Thhalv10000248m.g Eutrema salsugineum
Thhalv10010424m.g Eutrema salsugineum
TPR.G19073 Trifolium pratense
TPR.G28864 Trifolium pratense
TPR.G30703 Trifolium pratense
TWI09G1584 Tripterygium wilfordii
TWI53G0455 Tripterygium wilfordii
TWI53G2085 Tripterygium wilfordii
TWI60G0343 Tripterygium wilfordii
TWI73G0884 Tripterygium wilfordii
TWI74G1276 Tripterygium wilfordii
unitig_0.g491 Utricularia gibba
unitig_736.g22665 Utricularia gibba
unitig_899.g14664 Utricularia gibba
unitig_899.g14941 Utricularia gibba
vmacro05338 Vaccinium macrocarpon
vmacro05430 Vaccinium macrocarpon
VMungo0251G2600 Vigna mungo
VMungo1215G1020 Vigna mungo
VMungo1215G2131 Vigna mungo
Zm00001eb019300 Zea mays
Zm00001eb038030 Zea mays
Zm00001eb176690 Zea mays
Zm00001eb226090 Zea mays
Zm00001eb314880 Zea mays

User provided reference genes

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