Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p61030 Brassica napus
A04p19470 Brassica napus
A08p18410 Brassica napus
A09p55930 Brassica napus
Aa31LG2G18370 Aethionema arabicum
Aa31sc338G10 Aethionema arabicum
Actinidia08940 Actinidia chinensis
Actinidia10527 Actinidia chinensis
Actinidia23113 Actinidia chinensis
Actinidia23114 Actinidia chinensis
Actinidia36870 Actinidia chinensis
Ah.12g060740 Amaranthus hybridus
Ah.12g060750 Amaranthus hybridus
AL4G16200 Arabidopsis lyrata
AL7G20120 Arabidopsis lyrata
Aqoxy7G03375 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3CBA4J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C56Y99 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WPJ5XW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WZ1AKR Arachis hypogaea
AT2G25070 Arabidopsis thaliana
AT4G31860 Arabidopsis thaliana
ATR0019G051 Amborella trichopoda
Atru.chr1.2782 Acer truncatum
Atru.chr7.2556 Acer truncatum
AUR62024798 Chenopodium quinoa
AUR62025871 Chenopodium quinoa
AUR62029842 Chenopodium quinoa
AUR62032423 Chenopodium quinoa
BcaB06g28033 Brassica carinata
BcaB08g35143 Brassica carinata
BcaC01g01052 Brassica carinata
BcaC02g08376 Brassica carinata
BcaC07g40892 Brassica carinata
BcaNung01492 Brassica carinata
BolC3t21067H Brassica oleracea
BolC4t27043H Brassica oleracea
BolC7t46340H Brassica oleracea
BolC8t51462H Brassica oleracea
BraA03t15144Z Brassica rapa
BraA04t17542Z Brassica rapa
BraA09t40994Z Brassica rapa
C03p87480 Brassica napus
C04p55030 Brassica napus
C07p58930 Brassica napus
C08p38900 Brassica napus
CAN.G480.19 Capsicum annuum
CAN.G521.10 Capsicum annuum
CAN.G940.7 Capsicum annuum
CANSAT25G1941 Cannabis sativa
CANSAT56G2146 Cannabis sativa
CARHR116640 Cardamine hirsuta
CARHR239770 Cardamine hirsuta
Carub.0004s0465 Capsella rubella
Carub.0007s0869 Capsella rubella
Ca_06646_v3 Cicer arietinum L.
Ca_13062_v3 Cicer arietinum L.
Ca_15784_v3 Cicer arietinum L.
CBR_g50412 Chara braunii
Cc04_g05220 Coffea canephora
Cc08_g07230 Coffea canephora
CDE02G0157 Ceratophyllum demersum
CDE06G1883 Ceratophyllum demersum
Cfa001870 Carpinus fangiana
Ciclev10008729m.g Citrus clementina
Ciclev10025621m.g Citrus clementina
CiPaw.01G255700 Carya illinoinensis
CiPaw.07G230800 Carya illinoinensis
CiPaw.08G005600 Carya illinoinensis
ClCG05G016200 Citrullus lanatus
ClCG09G003390 Citrullus lanatus
COL.COLO4_08356 Corchorus olitorius
COL.COLO4_18959 Corchorus olitorius
COL.COLO4_26751 Corchorus olitorius
Cpa.g.c40685 Carica papaya
Cpa.g.sc10.55 Carica papaya
Cpa.g.sc148.21 Carica papaya
Cre03.g186950 Chlamydomonas reinhardtii
Cre12.g501950 Chlamydomonas reinhardtii
CsaV3_4G036470 Cucumis sativus L.
CsaV3_7G031840 Cucumis sativus L.
CSS0002927 Camellia sinensis var. sinensis
CSS0017597 Camellia sinensis var. sinensis
CSS0020154 Camellia sinensis var. sinensis
CSS0027271 Camellia sinensis var. sinensis
DCAR_016309 Daucus carota
DCAR_022865 Daucus carota
DCAR_025551 Daucus carota
DCAR_025552 Daucus carota
Dinv12311 Davidia involucrata
Dinv18459 Davidia involucrata
Dinv21419 Davidia involucrata
Dinv23275 Davidia involucrata
Duzib168G1217 Durio zibethinus
Duzib187G0588 Durio zibethinus
Duzib192G0796 Durio zibethinus
Duzib235G0805 Durio zibethinus
ECA240G0906 Erigeron canadensis
ECA246G2110 Erigeron canadensis
ECA247G1049 Erigeron canadensis
EL10Ac2g02491 Beta vulgaris
Eucgr.C01895 Eucalyptus grandis
Eucgr.C02603 Eucalyptus grandis
Eucgr.J03124 Eucalyptus grandis
FAN05G3404 Fragaria x ananassa
FAN05G3745 Fragaria x ananassa
FAN14G0235 Fragaria x ananassa
FAN14G4256 Fragaria x ananassa
FAN15G3555 Fragaria x ananassa
FAN27G3331 Fragaria x ananassa
FvH4_2g41182 Fragaria vesca
FvH4_4g01691 Fragaria vesca
FvH4_6g28470 Fragaria vesca
FvH4_6g33081 Fragaria vesca
Glyma.04G060300 Glycine max
Glyma.04G060400 Glycine max
Glyma.06G060800 Glycine max
Glyma.07G021700 Glycine max
Glyma.08G220100 Glycine max
Glyma.14G101400 Glycine max
Glyma.17G223800 Glycine max
Gohir.A05G060300 Gossypium hirsutum
Gohir.A05G117800 Gossypium hirsutum
Gohir.A06G102200 Gossypium hirsutum
Gohir.A06G132502 Gossypium hirsutum
Gohir.A06G182600 Gossypium hirsutum
Gohir.A07G033300 Gossypium hirsutum
Gohir.D05G062500 Gossypium hirsutum
Gohir.D05G118700 Gossypium hirsutum
Gohir.D06G104150 Gossypium hirsutum
Gohir.D06G189500 Gossypium hirsutum
Gohir.D07G036700 Gossypium hirsutum
Gorai.001G038400 Gossypium raimondii
Gorai.009G063600 Gossypium raimondii
Gorai.009G122700 Gossypium raimondii
Gorai.010G119300 Gossypium raimondii
Gorai.010G222200 Gossypium raimondii
GSVIVG01016046001 Vitis vinifera
GSVIVG01035977001 Vitis vinifera
HanXRQChr02g0034061 Helianthus annuus
HanXRQChr03g0080041 Helianthus annuus
HanXRQChr05g0153691 Helianthus annuus
HanXRQChr13g0411021 Helianthus annuus
Haze_16678 Corylus avellana
Haze_21403 Corylus avellana
Hma1.2p1_0389F.1_g142490 Hydrangea macrophylla
HPP92_018546 Vanilla planifolia
Hund02376 Selenicereus undatus
Hund02983 Selenicereus undatus
Lalb_Chr01g0012011 Lupinus albus
Lalb_Chr04g0264581 Lupinus albus
Lalb_Chr06g0170621 Lupinus albus
Lalb_Chr14g0361741 Lupinus albus
Lalb_Chr23g0268181 Lupinus albus
Lj1g0027404 Lotus japonicus
Lj3g0012434 Lotus japonicus
Lj5g0016222 Lotus japonicus
Lj7A736G81 Lonicera japonica
Lj9A492G46 Lonicera japonica
Lsat_1_v5_gn_1_30880 Lactuca sativa
Lsat_1_v5_gn_1_63120 Lactuca sativa
Lsat_1_v5_gn_3_87080 Lactuca sativa
Lsat_1_v5_gn_4_7381 Lactuca sativa
Lsat_1_v5_gn_5_49740 Lactuca sativa
Lsat_1_v5_gn_5_8321 Lactuca sativa
Lsat_1_v5_gn_5_86361 Lactuca sativa
Lsat_1_v5_gn_6_21941 Lactuca sativa
Lsat_1_v5_gn_7_38440 Lactuca sativa
Lsat_1_v5_gn_8_156701 Lactuca sativa
Manes.03G007900 Manihot esculenta
Manes.11G068300 Manihot esculenta
Manes.16G130500 Manihot esculenta
MBI15_g18231_MAGBIO Magnolia biondii
MD08G1055600 Malus domestica
MD09G1226200 Malus domestica
MD12G1192600 Malus domestica
MD15G1041900 Malus domestica
MD17G1224700 Malus domestica
Medtr1g014190 Medicago truncatula
Medtr3g105880 Medicago truncatula
Medtr3g451410 Medicago truncatula
Medtr4g007440 Medicago truncatula
MELO3C016953.2 Cucumis melo
MELO3C023473.2 Cucumis melo
Migut.A00361 Erythranthe guttata
Migut.E01454 Erythranthe guttata
Migut.I00684 Erythranthe guttata
MSTRG.11190 Avicennia marina
MSTRG.11784 Avicennia marina
MSTRG.1630 Avicennia marina
MSTRG.25829 Avicennia marina
Nitab4.5_0000860g0190 Nicotiana tabacum
Nitab4.5_0000970g0090 Nicotiana tabacum
Nitab4.5_0001271g0040 Nicotiana tabacum
Nitab4.5_0001340g0060 Nicotiana tabacum
Nitab4.5_0001942g0130 Nicotiana tabacum
Nitab4.5_0004859g0040 Nicotiana tabacum
Oeu001632.2 Olea europaea
Oeu006862.1 Olea europaea
Oeu009651.1 Olea europaea
Oeu009808.1 Olea europaea
Oeu018276.1 Olea europaea
Oeu026836.1 Olea europaea
Oeu032513.2 Olea europaea
Oeu048546.1 Olea europaea
Os02g0180000 Oryza sativa ssp. japonica
Os02g0598500 Oryza sativa ssp. japonica
Os02g0599150 Oryza sativa ssp. japonica
Os02g0599151 Oryza sativa ssp. japonica
Os02g0599200 Oryza sativa ssp. japonica
Os02g0599700 Oryza sativa ssp. japonica
Os02g0600033 Oryza sativa ssp. japonica
Os02g0606900 Oryza sativa ssp. japonica
Os02g0607500 Oryza sativa ssp. japonica
Os04g0500900 Oryza sativa ssp. japonica
Os06g0651600 Oryza sativa ssp. japonica
Os09g0558000 Oryza sativa ssp. japonica
Peaxi162Scf00045g01412 Petunia axillaris
Peaxi162Scf00213g00934 Petunia axillaris
Peaxi162Scf00835g00115 Petunia axillaris
PGR031G2470 Punica granatum
PGR037G0007 Punica granatum
PGR044G1118 Punica granatum
Phvul.001G041200 Phaseolus vulgaris
Phvul.008G253000 Phaseolus vulgaris
Phvul.009G086400 Phaseolus vulgaris
Potri.001G043000 Populus trichocarpa
Potri.003G183800 Populus trichocarpa
Potri.006G265100 Populus trichocarpa
Potri.018G017701 Populus trichocarpa
Potri.018G017800 Populus trichocarpa
Pp3c13_14120 Physcomitrium patens
Pp3c3_17780 Physcomitrium patens
Pp3c4_17160 Physcomitrium patens
PRCOL_00004131 Prasinoderma coloniale
PRCOL_00006362 Prasinoderma coloniale
Prupe.1G394800 Prunus persica
Prupe.3G100400 Prunus persica
Prupe.3G100500 Prunus persica
Psat0s3216g0040 Pisum sativum
Psat0s832g0080 Pisum sativum
Psat5g033560 Pisum sativum
Psat6g026200 Pisum sativum
Psat7g079080 Pisum sativum
Psat7g261800 Pisum sativum
Psat7g262760 Pisum sativum
PSO063G5152 Papaver somniferum
PSO782G0353 Papaver somniferum
QL02p018750 Quercus lobata
RcHm_v2.0_Chr2g0132691 Rosa chinensis
RcHm_v2.0_Chr6g0299331 Rosa chinensis
Rhsim02G0212500 Rhododendron simsii
Rhsim12G0184700 Rhododendron simsii
Rhsim12G0186400 Rhododendron simsii
Sabra03G0134300 Salix brachista
Sabra06G0207100 Salix brachista
Sabra15G0056000 Salix brachista
Sabra15G0063700 Salix brachista
Sabra17G0051400 Salix brachista
Sabra18G0051000 Salix brachista
Sabra18G0051300 Salix brachista
Sabra18G0051600 Salix brachista
SalBow7G0192 Salvia bowleyana
Sc23g0006320 Simmondsia chinensis
Sed0016050 Sechium edule
Sed0021743 Sechium edule
SEGI_07343 Sequoiadendron giganteum
SGA_v2.0_scaffold147G36346 Striga asiatica
SGA_v2.0_scaffold37G14689 Striga asiatica
SHI21067 Sapria himalayana
SHI21073 Sapria himalayana
SMO133G0006 Selaginella moellendorffii
SMO137G0322 Selaginella moellendorffii
SMO141G0053 Selaginella moellendorffii
SMO147G0032 Selaginella moellendorffii
SMO165G0133 Selaginella moellendorffii
SMO165G0180 Selaginella moellendorffii
SMO339G0002 Selaginella moellendorffii
SMO364G0165 Selaginella moellendorffii
SMO367G0304 Selaginella moellendorffii
Solyc08g006060.3 Solanum lycopersicum
Solyc08g069233.1 Solanum lycopersicum
Solyc08g074230.1 Solanum lycopersicum
Solyc12g042570.2 Solanum lycopersicum
Sopen08g002030 Solanum pennellii
Sopen08g022880 Solanum pennellii
Sopen12g021710 Solanum pennellii
Sp4g04080 Schrenkiella parvula
Sp7g29670 Schrenkiella parvula
TAR383G0173 Trochodendron aralioides
TAR625G1396 Trochodendron aralioides
TAR626G0698 Trochodendron aralioides
THA.LOC104803859 Tarenaya hassleriana
Thecc.06G044600 Theobroma cacao
Thecc.09G014900 Theobroma cacao
Thhalv10000214m.g Eutrema salsugineum
Thhalv10025532m.g Eutrema salsugineum
TPR.G1882 Trifolium pratense
TPR.G3358 Trifolium pratense
TPR.G38864 Trifolium pratense
TWI18G0121 Tripterygium wilfordii
TWI34G1046 Tripterygium wilfordii
TWI63G0776 Tripterygium wilfordii
TWI75G0982 Tripterygium wilfordii
unitig_32.g10933 Utricularia gibba
unitig_52.g17479 Utricularia gibba
unitig_748.g8184 Utricularia gibba
vmacro11239 Vaccinium macrocarpon
VMungo0647G1245 Vigna mungo
VMungo0647G1523 Vigna mungo
VMungo1309G1140 Vigna mungo
Zm00001eb234050 Zea mays
Zm00001eb274970 Zea mays
Zm00001eb297210 Zea mays
Zm00001eb300200 Zea mays
Zm00001eb320490 Zea mays
Zm00001eb388780 Zea mays
Zm00001eb388790 Zea mays
Zm00001eb425880 Zea mays

User provided reference genes

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