Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p29870 Brassica napus
A06p29880 Brassica napus
A09p08150 Brassica napus
A10p14490 Brassica napus
Aa31LG1G18830 Aethionema arabicum
Aa31LG3G13030 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4160 Anthoceros agrestis
Actinidia28077 Actinidia chinensis
Actinidia33030 Actinidia chinensis
Actinidia38500 Actinidia chinensis
Ah.03g146920 Amaranthus hybridus
Ah.10g032420 Amaranthus hybridus
Ah.14g085360 Amaranthus hybridus
Ah.16g102170 Amaranthus hybridus
AL181U10030 Arabidopsis lyrata
AL4G46340 Arabidopsis lyrata
AL8G33070 Arabidopsis lyrata
AL8G40220 Arabidopsis lyrata
Aqoxy5G04378 Aquilegia oxysepala
Aqoxy5G04379 Aquilegia oxysepala
Aqoxy7G02871 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.8E0DY7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E5H6P5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I9GNP2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JYY71G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LSZ45Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LT1NG7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NL79KX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X9C7TS Arachis hypogaea
AT2G46880 Arabidopsis thaliana
AT5G57140 Arabidopsis thaliana
AT5G63140 Arabidopsis thaliana
ATR0579G022 Amborella trichopoda
ATR0580G213 Amborella trichopoda
Atru.chr5.810 Acer truncatum
Atru.chr7.948 Acer truncatum
AUR62011258 Chenopodium quinoa
AUR62011259 Chenopodium quinoa
AUR62022489 Chenopodium quinoa
AUR62027416 Chenopodium quinoa
AUR62031277 Chenopodium quinoa
AUR62031366 Chenopodium quinoa
AUR62041448 Chenopodium quinoa
AUR62042031 Chenopodium quinoa
BcaB02g09726 Brassica carinata
BcaB02g09727 Brassica carinata
BcaB05g22324 Brassica carinata
BcaB08g35991 Brassica carinata
BcaC01g02559 Brassica carinata
BcaC01g02560 Brassica carinata
BcaC01g02561 Brassica carinata
BcaC02g12629 Brassica carinata
BcaC02g12631 Brassica carinata
BcaC03g14178 Brassica carinata
BcaC04g19997 Brassica carinata
BcaC04g20000 Brassica carinata
BcaC04g23357 Brassica carinata
BolC2t07577H Brassica oleracea
BolC3t18600H Brassica oleracea
BolC3t18602H Brassica oleracea
BolC9t53834H Brassica oleracea
BolC9t57747H Brassica oleracea
BraA06t25937Z Brassica rapa
BraA06t25938Z Brassica rapa
BraA09t36466Z Brassica rapa
BraA10t43539Z Brassica rapa
C02p14530 Brassica napus
C03p63480 Brassica napus
C03p63490 Brassica napus
C09p09210 Brassica napus
C09p48950 Brassica napus
CAN.G33.16 Capsicum annuum
CAN.G546.27 Capsicum annuum
CANSAT11G0953 Cannabis sativa
CANSAT56G0648 Cannabis sativa
CANSAT56G2132 Cannabis sativa
CANSAT56G2157 Cannabis sativa
CARHR142230 Cardamine hirsuta
CARHR270920 Cardamine hirsuta
CARHR276980 Cardamine hirsuta
Carub.0004s2960 Capsella rubella
Carub.0008s1765 Capsella rubella
Carub.0008s2390 Capsella rubella
Ca_02114_v3 Cicer arietinum L.
Ca_23463_v3 Cicer arietinum L.
Ca_23476_v3 Cicer arietinum L.
CBR_g11192 Chara braunii
CBR_g32012 Chara braunii
Cc06_g17480 Coffea canephora
Cc11_g02390 Coffea canephora
CDE09G0410 Ceratophyllum demersum
CDE11G0491 Ceratophyllum demersum
Cfa003711 Carpinus fangiana
Cfa013459 Carpinus fangiana
Cfa022352 Carpinus fangiana
Ciclev10008494m.g Citrus clementina
Ciclev10020529m.g Citrus clementina
CiPaw.02G046200 Carya illinoinensis
CiPaw.07G197900 Carya illinoinensis
ClCG06G002390 Citrullus lanatus
ClCG06G013670 Citrullus lanatus
COL.COLO4_06922 Corchorus olitorius
COL.COLO4_23078 Corchorus olitorius
Cpa.g.sc57.66 Carica papaya
Cpa.g.sc95.4 Carica papaya
Cre03.g146207 Chlamydomonas reinhardtii
CsaV3_1G031940 Cucumis sativus L.
CsaV3_6G008450 Cucumis sativus L.
CsaV3_6G008460 Cucumis sativus L.
CSS0026737 Camellia sinensis var. sinensis
CSS0034294 Camellia sinensis var. sinensis
CSS0046233 Camellia sinensis var. sinensis
CSS0047633 Camellia sinensis var. sinensis
DCAR_018018 Daucus carota
DCAR_029720 Daucus carota
Dinv12684 Davidia involucrata
Dinv12685 Davidia involucrata
Dinv25453 Davidia involucrata
Dinv32657 Davidia involucrata
Duzib138G0340 Durio zibethinus
Duzib150G0152 Durio zibethinus
ECA232G2869 Erigeron canadensis
ECA238G0577 Erigeron canadensis
EL10Ac2g03188 Beta vulgaris
EL10Ac8g18820 Beta vulgaris
EL10Ac8g19302 Beta vulgaris
Eucgr.C02209 Eucalyptus grandis
Eucgr.E02854 Eucalyptus grandis
Eucgr.E02855 Eucalyptus grandis
Eucgr.E02856 Eucalyptus grandis
Eucgr.E02857 Eucalyptus grandis
Eucgr.E02858 Eucalyptus grandis
Eucgr.E02859 Eucalyptus grandis
Eucgr.L02726 Eucalyptus grandis
FAN01G2647 Fragaria x ananassa
FAN03G3024 Fragaria x ananassa
FAN06G2769 Fragaria x ananassa
FAN06G3606 Fragaria x ananassa
FAN07G1276 Fragaria x ananassa
FAN10G3198 Fragaria x ananassa
FAN10G3866 Fragaria x ananassa
FAN12G1839 Fragaria x ananassa
FAN17G2340 Fragaria x ananassa
FvH4_4g07080 Fragaria vesca
FvH4_7g18180 Fragaria vesca
Glyma.02G162700 Glycine max
Glyma.03G262400 Glycine max
Glyma.07G047500 Glycine max
Glyma.09G060300 Glycine max
Glyma.15G166900 Glycine max
Glyma.16G016000 Glycine max
Glyma.19G261500 Glycine max
Gohir.A05G408100 Gossypium hirsutum
Gohir.A08G122650 Gossypium hirsutum
Gohir.A12G118200 Gossypium hirsutum
Gohir.D04G007400 Gossypium hirsutum
Gohir.D08G143900 Gossypium hirsutum
Gohir.D09G016564 Gossypium hirsutum
Gohir.D12G122000 Gossypium hirsutum
Gorai.004G148500 Gossypium raimondii
Gorai.008G132800 Gossypium raimondii
Gorai.012G009100 Gossypium raimondii
GSVIVG01027480001 Vitis vinifera
GSVIVG01027482001 Vitis vinifera
GSVIVG01029307001 Vitis vinifera
GSVIVG01029309001 Vitis vinifera
HanXRQChr03g0065471 Helianthus annuus
HanXRQChr11g0324361 Helianthus annuus
HanXRQChr11g0324371 Helianthus annuus
HanXRQChr11g0324401 Helianthus annuus
HanXRQChr11g0324411 Helianthus annuus
HanXRQChr11g0324501 Helianthus annuus
HanXRQChr12g0355801 Helianthus annuus
Haze_15771 Corylus avellana
Haze_22033 Corylus avellana
Haze_22036 Corylus avellana
Haze_25294 Corylus avellana
Haze_25296 Corylus avellana
Hma1.2p1_0074F.1_g038920 Hydrangea macrophylla
Hma1.2p1_0235F.1_g098710 Hydrangea macrophylla
Hma1.2p1_0904F.1_g235270 Hydrangea macrophylla
HPP92_015380 Vanilla planifolia
HPP92_022275 Vanilla planifolia
HPP92_022380 Vanilla planifolia
Hund12767 Selenicereus undatus
Hund13095 Selenicereus undatus
Lalb_Chr10g0100991 Lupinus albus
Lalb_Chr18g0044801 Lupinus albus
Lalb_Chr23g0276771 Lupinus albus
Lj2A389T90 Lonicera japonica
Lj3g0024551 Lotus japonicus
Lj3g0027862 Lotus japonicus
Lj6g0026354 Lotus japonicus
Lj9A609T76 Lonicera japonica
Lsat_1_v5_gn_2_82241 Lactuca sativa
Lsat_1_v5_gn_4_158140 Lactuca sativa
Lsat_1_v5_gn_7_55861 Lactuca sativa
Manes.01G237700 Manihot esculenta
Manes.05G005800 Manihot esculenta
Manes.14G162132 Manihot esculenta
Mapoly0071s0006 Marchantia polymorpha
Mapoly0108s0065 Marchantia polymorpha
MBI04_g26117_MAGBIO Magnolia biondii
MBI04_g26118_MAGBIO Magnolia biondii
MBI16_g30549_MAGBIO Magnolia biondii
MBI16_g42992_MAGBIO Magnolia biondii
MD01G1097200 Malus domestica
MD01G1098300 Malus domestica
MD04G1168800 Malus domestica
MD07G1164800 Malus domestica
Medtr1g009460 Medicago truncatula
Medtr2g038080 Medicago truncatula
Medtr8g023770 Medicago truncatula
Medtr8g023780 Medicago truncatula
MELO3C017422.2 Cucumis melo
MELO3C022295.2 Cucumis melo
Migut.C00937 Erythranthe guttata
Migut.J00791 Erythranthe guttata
MSTRG.1116 Avicennia marina
MSTRG.19367 Avicennia marina
MSTRG.5938 Avicennia marina
Nitab4.5_0000329g0210 Nicotiana tabacum
Nitab4.5_0001245g0030 Nicotiana tabacum
Nitab4.5_0001819g0070 Nicotiana tabacum
Nitab4.5_0004784g0020 Nicotiana tabacum
Nn1g00478 Nelumbo nucifera
Nn2g12730 Nelumbo nucifera
Nn2g15020 Nelumbo nucifera
Nn2g15023 Nelumbo nucifera
Nn4g24603 Nelumbo nucifera
Oeu030088.1 Olea europaea
Oeu032683.2 Olea europaea
Oeu044667.1 Olea europaea
Os06g0699200 Oryza sativa ssp. japonica
Os09g0533300 Oryza sativa ssp. japonica
Peaxi162Scf00086g01413 Petunia axillaris
Peaxi162Scf00231g01017 Petunia axillaris
PGR042G1449 Punica granatum
PGR044G1918 Punica granatum
PGSC0003DMG400008519 Solanum tuberosum
Phvul.009G235600 Phaseolus vulgaris
Phvul.009G260300 Phaseolus vulgaris
Phvul.010G121500 Phaseolus vulgaris
Potri.002G183000 Populus trichocarpa
Potri.002G183200 Populus trichocarpa
Potri.006G074300 Populus trichocarpa
Potri.006G074500 Populus trichocarpa
Potri.014G109100 Populus trichocarpa
Pp3c13_7530 Physcomitrium patens
Pp3c6_14930 Physcomitrium patens
Pp3c7_25580 Physcomitrium patens
Prupe.1G074200 Prunus persica
Prupe.2G203700 Prunus persica
Psat1g143760 Pisum sativum
Psat4g164480 Pisum sativum
PSO063G0096 Papaver somniferum
PSO063G5759 Papaver somniferum
PSO170G0633 Papaver somniferum
PSO384G1450 Papaver somniferum
PSO782G1252 Papaver somniferum
QL02p046619 Quercus lobata
QL02p046637 Quercus lobata
QL08p048141 Quercus lobata
QL08p048157 Quercus lobata
RcHm_v2.0_Chr1g0361821 Rosa chinensis
RcHm_v2.0_Chr4g0399201 Rosa chinensis
Rhsim01G0181700 Rhododendron simsii
Rhsim01G0182000 Rhododendron simsii
Rhsim01G0182200 Rhododendron simsii
Rhsim02G0081000 Rhododendron simsii
Rhsim03G0267400 Rhododendron simsii
Sabra02G0132300 Salix brachista
Sabra06G0055300 Salix brachista
Sabra06G0055500 Salix brachista
Sabra14G0080400 Salix brachista
SalBow3G1332 Salvia bowleyana
SalBow3G2665 Salvia bowleyana
SalBow7G4157 Salvia bowleyana
Sc10g0004820 Simmondsia chinensis
Sc10g0004830 Simmondsia chinensis
Sc10g0004840 Simmondsia chinensis
Sc20g0001220 Simmondsia chinensis
Sed0005787 Sechium edule
Sed0013420 Sechium edule
Sed0025586 Sechium edule
SEGI_04086 Sequoiadendron giganteum
SEGI_07352 Sequoiadendron giganteum
SGA_v2.0_scaffold108G30835 Striga asiatica
SGA_v2.0_scaffold112G31603 Striga asiatica
SMO334G0006 Selaginella moellendorffii
Solyc07g009460.3 Solanum lycopersicum
Solyc11g066290.2 Solanum lycopersicum
Sopen07g005240 Solanum pennellii
Sopen11g026030 Solanum pennellii
Sp2g26270 Schrenkiella parvula
Sp4g28900 Schrenkiella parvula
Sp6g18870 Schrenkiella parvula
TAR383G0450 Trochodendron aralioides
TAR629G2641 Trochodendron aralioides
THA.LOC104811767 Tarenaya hassleriana
THA.LOC104817407 Tarenaya hassleriana
THA.LOC104821494 Tarenaya hassleriana
Thecc.01G329800 Theobroma cacao
Thecc.01G329900 Theobroma cacao
Thecc.09G187300 Theobroma cacao
Thhalv10004379m.g Eutrema salsugineum
Thhalv10013720m.g Eutrema salsugineum
Thhalv10018823m.g Eutrema salsugineum
TPR.G7567 Trifolium pratense
TWI14G0180 Tripterygium wilfordii
TWI32G0531 Tripterygium wilfordii
unitig_0.g2101 Utricularia gibba
unitig_699.g19409 Utricularia gibba
unitig_748.g7713 Utricularia gibba
vmacro05992 Vaccinium macrocarpon
vmacro12633 Vaccinium macrocarpon
VMungo0331G1693 Vigna mungo
VMungo1309G0484 Vigna mungo
VMungo1309G2680 Vigna mungo
Zm00001eb273010 Zea mays
Zm00001eb319660 Zea mays

User provided reference genes

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