Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p33370 Brassica napus
A05p10330 Brassica napus
A05p24930 Brassica napus
A05p24940 Brassica napus
A09p33780 Brassica napus
Aa31LG1G26130 Aethionema arabicum
Aa31LG2G13620 Aethionema arabicum
Aa31LG9G15410 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1398 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1683 Anthoceros agrestis
Actinidia05802 Actinidia chinensis
Actinidia09229 Actinidia chinensis
Actinidia10886 Actinidia chinensis
Actinidia30968 Actinidia chinensis
Ah.12g054520 Amaranthus hybridus
AL1G46580 Arabidopsis lyrata
AL4G31440 Arabidopsis lyrata
AL4G43560 Arabidopsis lyrata
Aqoxy1G00167 Aquilegia oxysepala
Aqoxy2G01368 Aquilegia oxysepala
Aqoxy2G01370 Aquilegia oxysepala
Aqoxy3G02481 Aquilegia oxysepala
Aqoxy555s001 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2P4BKG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3599G4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E8TFP6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FC0NGR Arachis hypogaea
AT1G32380 Arabidopsis thaliana
AT2G35390 Arabidopsis thaliana
AT2G44530 Arabidopsis thaliana
ATR0049G034 Amborella trichopoda
ATR0605G363 Amborella trichopoda
Atru.chr1.2082 Acer truncatum
Atru.chr1.2083 Acer truncatum
Atru.chr6.1765 Acer truncatum
AUR62007240 Chenopodium quinoa
AUR62013809 Chenopodium quinoa
AUR62018630 Chenopodium quinoa
AUR62018760 Chenopodium quinoa
AUR62023348 Chenopodium quinoa
BcaB02g09433 Brassica carinata
BcaB03g13737 Brassica carinata
BcaB03g13738 Brassica carinata
BcaB05g23466 Brassica carinata
BcaB06g29385 Brassica carinata
BcaB07g31938 Brassica carinata
BcaB07g32922 Brassica carinata
BcaC02g07099 Brassica carinata
BcaC02g11646 Brassica carinata
BcaC05g27276 Brassica carinata
BcaC05g27872 Brassica carinata
BolC4t22923H Brassica oleracea
BolC4t28611H Brassica oleracea
BolC5t31912H Brassica oleracea
BolC5t32615H Brassica oleracea
BraA04t18798Z Brassica rapa
BraA05t19971Z Brassica rapa
BraA05t21377Z Brassica rapa
BraA09t38928Z Brassica rapa
C04p12770 Brassica napus
C04p71060 Brassica napus
C05p31840 Brassica napus
C05p38750 Brassica napus
CAN.G201.11 Capsicum annuum
CAN.G799.6 Capsicum annuum
CAN.G95.13 Capsicum annuum
CANSAT21G0161 Cannabis sativa
CANSAT25G1926 Cannabis sativa
CARHR031800 Cardamine hirsuta
CARHR129550 Cardamine hirsuta
CARHR139750 Cardamine hirsuta
CARHR151690 Cardamine hirsuta
Carub.0001s3078 Capsella rubella
Carub.0004s1708 Capsella rubella
Carub.0004s2710 Capsella rubella
Ca_22056_v3 Cicer arietinum L.
Ca_25882_v3 Cicer arietinum L.
CBR_g3783 Chara braunii
CBR_g4141 Chara braunii
Cc02_g25840 Coffea canephora
Cc08_g02300 Coffea canephora
CDE07G1668 Ceratophyllum demersum
CDE12G0349 Ceratophyllum demersum
Cfa011001 Carpinus fangiana
Cfa012395 Carpinus fangiana
Cfa024547 Carpinus fangiana
Cfa025415 Carpinus fangiana
Ciclev10031694m.g Citrus clementina
Ciclev10031791m.g Citrus clementina
CiPaw.11G089500 Carya illinoinensis
CiPaw.12G061100 Carya illinoinensis
CiPaw.13G020600 Carya illinoinensis
CiPaw.14G014500 Carya illinoinensis
ClCG09G012280 Citrullus lanatus
ClCG10G001860 Citrullus lanatus
COL.COLO4_17100 Corchorus olitorius
COL.COLO4_19348 Corchorus olitorius
Cpa.g.sc6.432 Carica papaya
Cre08.g378850 Chlamydomonas reinhardtii
CsaV3_1G016970 Cucumis sativus L.
CsaV3_1G016980 Cucumis sativus L.
CsaV3_3G002000 Cucumis sativus L.
CsaV3_3G049440 Cucumis sativus L.
CsaV3_3G049450 Cucumis sativus L.
CSS0018980 Camellia sinensis var. sinensis
CSS0032095 Camellia sinensis var. sinensis
CSS0032462 Camellia sinensis var. sinensis
CSS0034184 Camellia sinensis var. sinensis
DCAR_008293 Daucus carota
DCAR_015765 Daucus carota
Dinv25191 Davidia involucrata
Dinv28924 Davidia involucrata
Dinv43569 Davidia involucrata
Duzib068G0350 Durio zibethinus
Duzib084G0735 Durio zibethinus
Duzib128G0458 Durio zibethinus
Duzib205G1626 Durio zibethinus
ECA236G0473 Erigeron canadensis
ECA246G1585 Erigeron canadensis
ECA246G3509 Erigeron canadensis
EL10Ac1g00698 Beta vulgaris
EL10Ac5g12179 Beta vulgaris
Eucgr.E01722 Eucalyptus grandis
FAN01G1909 Fragaria x ananassa
FAN03G2232 Fragaria x ananassa
FAN04G0437 Fragaria x ananassa
FAN06G4175 Fragaria x ananassa
FAN08G1253 Fragaria x ananassa
FAN10G0440 Fragaria x ananassa
FAN13G3302 Fragaria x ananassa
FAN18G3507 Fragaria x ananassa
FvH4_5g21390 Fragaria vesca
FvH4_7g07890 Fragaria vesca
Glyma.03G100800 Glycine max
Glyma.05G070500 Glycine max
Glyma.07G122000 Glycine max
Glyma.17G153200 Glycine max
Gohir.A03G090866 Gossypium hirsutum
Gohir.A03G144600 Gossypium hirsutum
Gohir.A05G333600 Gossypium hirsutum
Gohir.A08G159000 Gossypium hirsutum
Gohir.A11G260100 Gossypium hirsutum
Gohir.A12G209900 Gossypium hirsutum
Gohir.D04G072900 Gossypium hirsutum
Gohir.D08G179400 Gossypium hirsutum
Gohir.D12G212600 Gossypium hirsutum
Gorai.004G187900 Gossypium raimondii
Gorai.008G228200 Gossypium raimondii
Gorai.012G081900 Gossypium raimondii
GSVIVG01013241001 Vitis vinifera
GSVIVG01018382001 Vitis vinifera
HanXRQChr01g0024021 Helianthus annuus
HanXRQChr03g0090611 Helianthus annuus
HanXRQChr04g0117301 Helianthus annuus
HanXRQChr04g0126481 Helianthus annuus
HanXRQChr06g0167281 Helianthus annuus
HanXRQChr06g0179641 Helianthus annuus
HanXRQChr09g0243351 Helianthus annuus
HanXRQChr12g0354171 Helianthus annuus
HanXRQChr15g0470311 Helianthus annuus
HanXRQChr16g0528901 Helianthus annuus
HanXRQChr17g0535771 Helianthus annuus
HanXRQChr17g0562481 Helianthus annuus
Haze_02936 Corylus avellana
Haze_08289 Corylus avellana
Haze_27290 Corylus avellana
Haze_27352 Corylus avellana
Hma1.2p1_0021F.1_g014410 Hydrangea macrophylla
Hma1.2p1_0174F.1_g076930 Hydrangea macrophylla
Hma1.2p1_0232F.1_g097800 Hydrangea macrophylla
Hma1.2p1_0414F.1_g147860 Hydrangea macrophylla
HPP92_002976 Vanilla planifolia
HPP92_002980 Vanilla planifolia
HPP92_002981 Vanilla planifolia
HPP92_014965 Vanilla planifolia
HPP92_014966 Vanilla planifolia
Hund14423 Selenicereus undatus
Hund17141 Selenicereus undatus
Hund26938 Selenicereus undatus
Lalb_Chr05g0220621 Lupinus albus
Lalb_Chr07g0194941 Lupinus albus
Lalb_Chr09g0329541 Lupinus albus
Lalb_Chr09g0329551 Lupinus albus
Lalb_Chr16g0386111 Lupinus albus
Lj2A244G65 Lonicera japonica
Lj3g0019900 Lotus japonicus
Lj4g0028247 Lotus japonicus
Lj7A554T14 Lonicera japonica
Lsat_1_v5_gn_0_38501 Lactuca sativa
Lsat_1_v5_gn_0_46180 Lactuca sativa
Lsat_1_v5_gn_0_46640 Lactuca sativa
Lsat_1_v5_gn_3_16260 Lactuca sativa
Lsat_1_v5_gn_4_39140 Lactuca sativa
Lsat_1_v5_gn_5_31200 Lactuca sativa
Manes.05G060700 Manihot esculenta
Manes.15G170600 Manihot esculenta
Mapoly0124s0046 Marchantia polymorpha
MBI04_g32787_MAGBIO Magnolia biondii
MCO15G058 Micromonas commoda
MD02G1228700 Malus domestica
MD06G1028600 Malus domestica
MD07G1084000 Malus domestica
MD16G1155900 Malus domestica
Medtr4g098820 Medicago truncatula
Medtr8g009660 Medicago truncatula
MELO3C003379.2 Cucumis melo
MELO3C013871.2 Cucumis melo
Migut.B01468 Erythranthe guttata
Migut.E00920 Erythranthe guttata
MSTRG.17097 Avicennia marina
MSTRG.1976 Avicennia marina
Nitab4.5_0000166g0110 Nicotiana tabacum
Nitab4.5_0000545g0050 Nicotiana tabacum
Nitab4.5_0000764g0040 Nicotiana tabacum
Nitab4.5_0000765g0070 Nicotiana tabacum
Nitab4.5_0003100g0070 Nicotiana tabacum
Nitab4.5_0004658g0040 Nicotiana tabacum
Nn1g00591 Nelumbo nucifera
Nn6g33645 Nelumbo nucifera
Oeu005305.1 Olea europaea
Oeu009771.1 Olea europaea
Oeu034865.1 Olea europaea
Oeu056813.1 Olea europaea
Os02g0127700 Oryza sativa ssp. japonica
Os02g0517564 Oryza sativa ssp. japonica
Os03g0100040 Oryza sativa ssp. japonica
Os06g0617800 Oryza sativa ssp. japonica
Peaxi162Scf00312g00610 Petunia axillaris
Peaxi162Scf00497g00087 Petunia axillaris
Peaxi162Scf00901g00217 Petunia axillaris
PGR042G0404 Punica granatum
PGSC0003DMG400024226 Solanum tuberosum
PGSC0003DMG400026596 Solanum tuberosum
PGSC0003DMG402021921 Solanum tuberosum
Phvul.003G228800 Phaseolus vulgaris
Phvul.010G040300 Phaseolus vulgaris
Potri.001G145700 Populus trichocarpa
Potri.003G088400 Populus trichocarpa
Potri.014G179600 Populus trichocarpa
Pp3c11_19160 Physcomitrium patens
Pp3c20_2460 Physcomitrium patens
Pp3c24_14200 Physcomitrium patens
Pp3c7_7230 Physcomitrium patens
Pp3c8_17920 Physcomitrium patens
PRCOL_00000534 Prasinoderma coloniale
Prupe.2G110600 Prunus persica
Prupe.5G043200 Prunus persica
Psat4g078360 Pisum sativum
Psat4g216520 Pisum sativum
Psat6g016680 Pisum sativum
PSO339G0442 Papaver somniferum
PSO384G0771 Papaver somniferum
PSO675G1913 Papaver somniferum
PSO732G0620 Papaver somniferum
PSO832G3390 Papaver somniferum
QL04p024938 Quercus lobata
QL12p006857 Quercus lobata
RcHm_v2.0_Chr1g0341521 Rosa chinensis
RcHm_v2.0_Chr7g0208781 Rosa chinensis
Rhsim07G0040600 Rhododendron simsii
Rhsim07G0123400 Rhododendron simsii
RhsimUnG0113700 Rhododendron simsii
Sabra03G0058400 Salix brachista
Sabra14G0138000 Salix brachista
Sabra14G0140100 Salix brachista
Sc02g0003330 Simmondsia chinensis
Sc21g0002240 Simmondsia chinensis
Sc22g0001430 Simmondsia chinensis
Sed0005770 Sechium edule
Sed0014389 Sechium edule
Sed0020285 Sechium edule
SEGI_00278 Sequoiadendron giganteum
SEGI_12570 Sequoiadendron giganteum
SEGI_29534 Sequoiadendron giganteum
SEGI_35184 Sequoiadendron giganteum
SGA_v2.0_scaffold122G33219 Striga asiatica
SGA_v2.0_scaffold340G49294 Striga asiatica
SGA_v2.0_scaffold39G15173 Striga asiatica
SGA_v2.0_scaffold578G53023 Striga asiatica
SGA_v2.0_scaffold7G04180 Striga asiatica
SHI03357 Sapria himalayana
SMO271G0147 Selaginella moellendorffii
SMO358G0235 Selaginella moellendorffii
Solyc06g061040.4 Solanum lycopersicum
Solyc08g077200.4 Solanum lycopersicum
Solyc10g024410.2 Solanum lycopersicum
Sopen06g021240 Solanum pennellii
Sopen08g025760 Solanum pennellii
Sopen10g009520 Solanum pennellii
Sp1g28500 Schrenkiella parvula
Sp4g17620 Schrenkiella parvula
Sp4g26630 Schrenkiella parvula
TAR324G0001 Trochodendron aralioides
TAR324G0003 Trochodendron aralioides
TAR369G0433 Trochodendron aralioides
TAR371G0893 Trochodendron aralioides
TAR374G0221 Trochodendron aralioides
TAR629G2578 Trochodendron aralioides
THA.LOC104807082 Tarenaya hassleriana
THA.LOC104812752 Tarenaya hassleriana
THA.LOC104817170 Tarenaya hassleriana
Thecc.03G233000 Theobroma cacao
Thecc.10G000700 Theobroma cacao
Thhalv10001479m.g Eutrema salsugineum
Thhalv10007797m.g Eutrema salsugineum
Thhalv10016745m.g Eutrema salsugineum
TPR.G17378 Trifolium pratense
TPR.G19200 Trifolium pratense
TWI14G0205 Tripterygium wilfordii
TWI60G0415 Tripterygium wilfordii
TWI81G0705 Tripterygium wilfordii
unitig_21.g20544 Utricularia gibba
unitig_8.g3916 Utricularia gibba
vmacro13552 Vaccinium macrocarpon
vmacro14148 Vaccinium macrocarpon
vmacro14154 Vaccinium macrocarpon
VMungo0251G3564 Vigna mungo
VMungo0331G0177 Vigna mungo
Zm00001eb000180 Zea mays
Zm00001eb231020 Zea mays
Zm00001eb388190 Zea mays

User provided reference genes

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