Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p19540 Brassica napus
A10p07320 Brassica napus
Aa31LG6G16320 Aethionema arabicum
Aa31LG6G9230 Aethionema arabicum
Aa31LG9G13370 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.317 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5096 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5097 Anthoceros agrestis
Actinidia20581 Actinidia chinensis
Ah.01g010430 Amaranthus hybridus
Ah.03g145940 Amaranthus hybridus
Ah.12g059460 Amaranthus hybridus
AL1G52220 Arabidopsis lyrata
AL1G52470 Arabidopsis lyrata
AL4G31480 Arabidopsis lyrata
AL4G31490 Arabidopsis lyrata
AL7G10130 Arabidopsis lyrata
Aqoxy298s001 Aquilegia oxysepala
Aqoxy6G00435 Aquilegia oxysepala
Aqoxy6G01536 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2QZK6G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.382XQL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5KG39U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F4DEZ9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K7J832 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZQ0U08 Arachis hypogaea
AT1G44180 Arabidopsis thaliana
AT1G44820 Arabidopsis thaliana
AT4G38220 Arabidopsis thaliana
ATR0062G001 Amborella trichopoda
ATR0193G018 Amborella trichopoda
ATR0193G021 Amborella trichopoda
ATR0193G050 Amborella trichopoda
ATR0605G181 Amborella trichopoda
Atru.chr13.1419 Acer truncatum
Atru.chr5.3575 Acer truncatum
AUR62004724 Chenopodium quinoa
AUR62010031 Chenopodium quinoa
AUR62010192 Chenopodium quinoa
AUR62010193 Chenopodium quinoa
AUR62010194 Chenopodium quinoa
AUR62010200 Chenopodium quinoa
AUR62010201 Chenopodium quinoa
AUR62010203 Chenopodium quinoa
AUR62010205 Chenopodium quinoa
AUR62013192 Chenopodium quinoa
AUR62013193 Chenopodium quinoa
AUR62013195 Chenopodium quinoa
AUR62023643 Chenopodium quinoa
AUR62023644 Chenopodium quinoa
AUR62027496 Chenopodium quinoa
AUR62029650 Chenopodium quinoa
BcaB07g33919 Brassica carinata
BcaC01g05729 Brassica carinata
BcaC08g42875 Brassica carinata
BcaNung01315 Brassica carinata
BcaNung01998 Brassica carinata
BcaNung04229 Brassica carinata
BNapus_Darmor_BZH_scaffold_146p00050 Brassica napus
BolC1t00005H Brassica oleracea
BolC3t14676H Brassica oleracea
BolC6t35230H Brassica oleracea
BolC7t46796H Brassica oleracea
BraA01t00004Z Brassica rapa
BraA03t11207Z Brassica rapa
BraA06t27779Z Brassica rapa
BraSC36t46085Z Brassica rapa
C03p22770 Brassica napus
C04p12740 Brassica napus
C06p00950 Brassica napus
CAN.G127.1 Capsicum annuum
CAN.G1645.7 Capsicum annuum
CAN.G362.46 Capsicum annuum
CANSAT25G0469 Cannabis sativa
CANSAT25G1142 Cannabis sativa
CANSAT25G2902 Cannabis sativa
CARHR036070 Cardamine hirsuta
CARHR129590 Cardamine hirsuta
CARHR294000 Cardamine hirsuta
Carub.0001s3512 Capsella rubella
Carub.0001s3534 Capsella rubella
Carub.0004s1712 Capsella rubella
Carub.0007s0015 Capsella rubella
Ca_05220_v3 Cicer arietinum L.
Ca_05221_v3 Cicer arietinum L.
Ca_12370_v3 Cicer arietinum L.
CBR_g20012 Chara braunii
CBR_g38106 Chara braunii
CBR_g576 Chara braunii
Cc09_g10720 Coffea canephora
Cc10_g10950 Coffea canephora
CDE04G1787 Ceratophyllum demersum
CDE10G0269 Ceratophyllum demersum
CDE10G1233 Ceratophyllum demersum
Cfa004793 Carpinus fangiana
Cfa015997 Carpinus fangiana
Ciclev10028440m.g Citrus clementina
CiPaw.05G094500 Carya illinoinensis
CiPaw.05G223600 Carya illinoinensis
CiPaw.06G114300 Carya illinoinensis
ClCG02G010790 Citrullus lanatus
ClCG03G012120 Citrullus lanatus
ClCG06G016840 Citrullus lanatus
ClCG07G006430 Citrullus lanatus
COL.COLO4_03846 Corchorus olitorius
COL.COLO4_12209 Corchorus olitorius
Cpa.g.sc36.43 Carica papaya
Cpa.g.sc9.389 Carica papaya
Cre06.g271700 Chlamydomonas reinhardtii
Cre12.g508500 Chlamydomonas reinhardtii
CsaV3_1G001680 Cucumis sativus L.
CsaV3_6G010020 Cucumis sativus L.
CSS0001767 Camellia sinensis var. sinensis
CSS0017538 Camellia sinensis var. sinensis
DCAR_002347 Daucus carota
DCAR_017408 Daucus carota
DCAR_022610 Daucus carota
Dinv33637 Davidia involucrata
Dinv40400 Davidia involucrata
Dinv41861 Davidia involucrata
Duzib116G0185 Durio zibethinus
Duzib248G0377 Durio zibethinus
ECA232G2089 Erigeron canadensis
ECA233G1940 Erigeron canadensis
ECA233G2334 Erigeron canadensis
ECA233G2481 Erigeron canadensis
ECA233G3833 Erigeron canadensis
ECA233G4695 Erigeron canadensis
EL10Ac3g06452 Beta vulgaris
EL10Ac9g21555 Beta vulgaris
Eucgr.F04363 Eucalyptus grandis
Eucgr.I01541 Eucalyptus grandis
FAN15G0507 Fragaria x ananassa
FAN15G2027 Fragaria x ananassa
FAN20G0736 Fragaria x ananassa
FAN24G0773 Fragaria x ananassa
FAN24G1292 Fragaria x ananassa
FAN27G1239 Fragaria x ananassa
FvH4_2g16990 Fragaria vesca
FvH4_2g26640 Fragaria vesca
Glyma.13G081500 Glycine max
Glyma.20G000500 Glycine max
Gohir.A01G188200 Gossypium hirsutum
Gohir.A03G026900 Gossypium hirsutum
Gohir.A03G164500 Gossypium hirsutum
Gohir.A03G170300 Gossypium hirsutum
Gohir.A04G111400 Gossypium hirsutum
Gohir.A08G000800 Gossypium hirsutum
Gohir.A13G064200 Gossypium hirsutum
Gohir.D01G181400 Gossypium hirsutum
Gohir.D02G124300 Gossypium hirsutum
Gohir.D02G193400 Gossypium hirsutum
Gohir.D04G151700 Gossypium hirsutum
Gohir.D07G015900 Gossypium hirsutum
Gohir.D09G061600 Gossypium hirsutum
Gohir.D11G158275 Gossypium hirsutum
Gohir.D12G088100 Gossypium hirsutum
Gohir.D12G240100 Gossypium hirsutum
Gohir.D13G057700 Gossypium hirsutum
Gorai.002G221000 Gossypium raimondii
Gorai.005G216200 Gossypium raimondii
Gorai.012G138500 Gossypium raimondii
Gorai.013G064900 Gossypium raimondii
GSVIVG01008893001 Vitis vinifera
GSVIVG01023859001 Vitis vinifera
HanXRQChr06g0164451 Helianthus annuus
HanXRQChr16g0515211 Helianthus annuus
Haze_00468 Corylus avellana
Haze_01961 Corylus avellana
Haze_01968 Corylus avellana
Hma1.2p1_0032F.1_g018680 Hydrangea macrophylla
Hma1.2p1_0777F.1_g216660 Hydrangea macrophylla
HPP92_015473 Vanilla planifolia
HPP92_016024 Vanilla planifolia
Hund00098 Selenicereus undatus
Hund00099 Selenicereus undatus
Hund00122 Selenicereus undatus
Hund00193 Selenicereus undatus
Hund16846 Selenicereus undatus
Hund16847 Selenicereus undatus
Hund27034 Selenicereus undatus
Lalb_Chr10g0101881 Lupinus albus
Lalb_Chr17g0337711 Lupinus albus
Lj1C768T5 Lonicera japonica
Lj1g0013102 Lotus japonicus
Lj2g0028099 Lotus japonicus
Lj3g0021566 Lotus japonicus
Lj5A171T129 Lonicera japonica
Lj5C171T6 Lonicera japonica
Lj7C338T6 Lonicera japonica
Lsat_1_v5_gn_8_119401 Lactuca sativa
Lsat_1_v5_gn_8_24621 Lactuca sativa
Manes.02G161800 Manihot esculenta
Manes.03G096800 Manihot esculenta
Manes.03G096900 Manihot esculenta
Mapoly0016s0174 Marchantia polymorpha
Mapoly0023s0037 Marchantia polymorpha
Mapoly0073s0071 Marchantia polymorpha
Mapoly0073s0072 Marchantia polymorpha
MBI06_g20721_MAGBIO Magnolia biondii
MD05G1143000 Malus domestica
MD10G1142800 Malus domestica
MD15G1352300 Malus domestica
MD15G1413100 Malus domestica
Medtr0400s0010 Medicago truncatula
Medtr1g038920 Medicago truncatula
Medtr1g039010 Medicago truncatula
Medtr5g058430 Medicago truncatula
MELO3C004918.2 Cucumis melo
MELO3C013482.2 Cucumis melo
MELO3C017108.2 Cucumis melo
MELO3C019536.2 Cucumis melo
MELO3C020723.2 Cucumis melo
MELO3C021094.2 Cucumis melo
MELO3C021748.2 Cucumis melo
MELO3C025808.2 Cucumis melo
MELO3C030590.2 Cucumis melo
Migut.C00316 Erythranthe guttata
Migut.N01367 Erythranthe guttata
Migut.N03294 Erythranthe guttata
MSTRG.24158 Avicennia marina
MSTRG.24941 Avicennia marina
Nitab4.5_0000783g0010 Nicotiana tabacum
Nitab4.5_0001035g0020 Nicotiana tabacum
Nitab4.5_0002377g0010 Nicotiana tabacum
Nitab4.5_0010601g0020 Nicotiana tabacum
Nn5g28199 Nelumbo nucifera
Nn5g28863 Nelumbo nucifera
Nn6g31635 Nelumbo nucifera
Oeu006411.1 Olea europaea
Os06g0210200 Oryza sativa ssp. japonica
Os08g0511900 Oryza sativa ssp. japonica
Peaxi162Scf00362g00143 Petunia axillaris
Peaxi162Scf00485g00104 Petunia axillaris
PGR044G1898 Punica granatum
PGR142G2150 Punica granatum
PGSC0003DMG400000909 Solanum tuberosum
Phvul.003G001200 Phaseolus vulgaris
Phvul.008G164800 Phaseolus vulgaris
Potri.002G085400 Populus trichocarpa
Potri.002G085500 Populus trichocarpa
Potri.004G208100 Populus trichocarpa
Potri.009G169300 Populus trichocarpa
Pp3c18_13490 Physcomitrium patens
Pp3c20_9940 Physcomitrium patens
Pp3c7_6440 Physcomitrium patens
PRCOL_00003754 Prasinoderma coloniale
PRCOL_00004113 Prasinoderma coloniale
Prupe.1G500800 Prunus persica
Prupe.8G181800 Prunus persica
Psat0s4441g0080 Pisum sativum
Psat2g078800 Pisum sativum
Psat6g100400 Pisum sativum
PSO541G5789 Papaver somniferum
PSO541G6550 Papaver somniferum
PSO675G2728 Papaver somniferum
PSO675G4445 Papaver somniferum
PSO675G4925 Papaver somniferum
QL09p035596 Quercus lobata
QL09p035599 Quercus lobata
QL11p056633 Quercus lobata
QL11p056683 Quercus lobata
QL11p056748 Quercus lobata
RcHm_v2.0_Chr1g0332451 Rosa chinensis
RcHm_v2.0_Chr2g0092741 Rosa chinensis
RcHm_v2.0_Chr2g0092811 Rosa chinensis
RcHm_v2.0_Chr2g0126171 Rosa chinensis
RcHm_v2.0_Chr6g0281181 Rosa chinensis
RcHm_v2.0_Chr6g0295491 Rosa chinensis
Rhsim11G0198400 Rhododendron simsii
RhsimUnG0094300 Rhododendron simsii
Sabra02G0066900 Salix brachista
Sabra04G0140000 Salix brachista
Sabra09G0131300 Salix brachista
SalBow6G3139 Salvia bowleyana
SalBow7G2557 Salvia bowleyana
Sc25g0002300 Simmondsia chinensis
Sc26g0000270 Simmondsia chinensis
Sc26g0000300 Simmondsia chinensis
Sed0002468 Sechium edule
Sed0005930 Sechium edule
Sed0015905 Sechium edule
SEGI_13605 Sequoiadendron giganteum
SEGI_28446 Sequoiadendron giganteum
SEGI_34695 Sequoiadendron giganteum
SGA_v2.0_scaffold28G12007 Striga asiatica
SGA_v2.0_scaffold73G24494 Striga asiatica
SMO351G0186 Selaginella moellendorffii
Solyc01g112280.3 Solanum lycopersicum
Solyc11g012970.2 Solanum lycopersicum
Sopen01g054390 Solanum pennellii
Sopen11g007730 Solanum pennellii
Sp1g33670 Schrenkiella parvula
Sp1g33680 Schrenkiella parvula
Sp4g17660 Schrenkiella parvula
Sp7g37520 Schrenkiella parvula
TAR376G0379 Trochodendron aralioides
TAR628G0030 Trochodendron aralioides
THA.LOC104817223 Tarenaya hassleriana
THA.LOC104824731 Tarenaya hassleriana
Thecc.02G147700 Theobroma cacao
Thecc.08G122400 Theobroma cacao
Thhalv10011489m.g Eutrema salsugineum
Thhalv10012140m.g Eutrema salsugineum
Thhalv10016717m.g Eutrema salsugineum
Thhalv10025205m.g Eutrema salsugineum
TPR.G27806 Trifolium pratense
TPR.G35531 Trifolium pratense
TWI12G1004 Tripterygium wilfordii
TWI31G0511 Tripterygium wilfordii
unitig_699.g19916 Utricularia gibba
unitig_744.g24556 Utricularia gibba
unitig_747.g21178 Utricularia gibba
unitig_747.g21179 Utricularia gibba
vmacro00819 Vaccinium macrocarpon
vmacro00820 Vaccinium macrocarpon
vmacro02344 Vaccinium macrocarpon
VMungo0251G2191 Vigna mungo
VMungo0647G1598 Vigna mungo
VMungo0647G2405 Vigna mungo
VMungo0720G2166 Vigna mungo
Zm00001eb035260 Zea mays
Zm00001eb090360 Zea mays
Zm00001eb279070 Zea mays

User provided reference genes

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