Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p22140 Brassica napus
A04p06050 Brassica napus
A05p08550 Brassica napus
A07p21720 Brassica napus
A09p46550 Brassica napus
Aa31LG10G9580 Aethionema arabicum
Aa31LG5G20430 Aethionema arabicum
Actinidia02984 Actinidia chinensis
Actinidia05291 Actinidia chinensis
Actinidia16957 Actinidia chinensis
Actinidia19752 Actinidia chinensis
Actinidia25066 Actinidia chinensis
Actinidia34342 Actinidia chinensis
Ah.08g212260 Amaranthus hybridus
Ah.08g212270 Amaranthus hybridus
Ah.10g033240 Amaranthus hybridus
Ah.13g069670 Amaranthus hybridus
Ah.13g069680 Amaranthus hybridus
Ah.16g107660 Amaranthus hybridus
AL4G36800 Arabidopsis lyrata
AL5G34460 Arabidopsis lyrata
Aqoxy4G03055 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.77M4BK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.91Z2HD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EFG9YQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YI9QZC Arachis hypogaea
AT2G39435 Arabidopsis thaliana
AT3G53540 Arabidopsis thaliana
Atru.chr12.567 Acer truncatum
Atru.chr12.568 Acer truncatum
Atru.chr8.2482 Acer truncatum
Atru.chr8.2483 Acer truncatum
AUR62022532 Chenopodium quinoa
AUR62035962 Chenopodium quinoa
AUR62040988 Chenopodium quinoa
AUR62042966 Chenopodium quinoa
BcaB01g00265 Brassica carinata
BcaB02g07777 Brassica carinata
BcaB02g08522 Brassica carinata
BcaC02g09154 Brassica carinata
BcaC07g39716 Brassica carinata
BcaC08g44633 Brassica carinata
BolC3t15005H Brassica oleracea
BolC4t22654H Brassica oleracea
BolC4t25474H Brassica oleracea
BolC6t37333H Brassica oleracea
BolC8t50490H Brassica oleracea
BraA03t11445Z Brassica rapa
BraA04t16309Z Brassica rapa
BraA05t19823Z Brassica rapa
BraA07t29854Z Brassica rapa
BraA09t40120Z Brassica rapa
C03p26210 Brassica napus
C04p10630 Brassica napus
C04p39020 Brassica napus
C06p21510 Brassica napus
C08p28880 Brassica napus
CANSAT49G0001 Cannabis sativa
CANSAT56G3745 Cannabis sativa
CARHR132200 Cardamine hirsuta
CARHR134280 Cardamine hirsuta
CARHR163450 Cardamine hirsuta
Carub.0004s2149 Capsella rubella
Carub.0005s2012 Capsella rubella
Ca_09596_v3 Cicer arietinum L.
Ca_27919_v3 Cicer arietinum L.
Cc02_g08520 Coffea canephora
Cc06_g03130 Coffea canephora
CDE02G1080 Ceratophyllum demersum
CDE02G3133 Ceratophyllum demersum
CDE09G1377 Ceratophyllum demersum
Cfa001544 Carpinus fangiana
Cfa017446 Carpinus fangiana
Ciclev10011022m.g Citrus clementina
Ciclev10030779m.g Citrus clementina
CiPaw.01G281500 Carya illinoinensis
CiPaw.09G187300 Carya illinoinensis
CiPaw.10G141600 Carya illinoinensis
ClCG04G008520 Citrullus lanatus
ClCG09G020250 Citrullus lanatus
ClCG10G020860 Citrullus lanatus
COL.COLO4_09164 Corchorus olitorius
COL.COLO4_10915 Corchorus olitorius
Cpa.g.sc1.328 Carica papaya
Cpa.g.sc114.3 Carica papaya
Cpa.g.sc2422.1 Carica papaya
Cpa.g.sc2422.2 Carica papaya
CsaV3_3G035160 Cucumis sativus L.
CsaV3_4G024630 Cucumis sativus L.
CsaV3_5G026190 Cucumis sativus L.
CSS0003815 Camellia sinensis var. sinensis
CSS0015001 Camellia sinensis var. sinensis
CSS0017146 Camellia sinensis var. sinensis
CSS0018541 Camellia sinensis var. sinensis
CSS0021193 Camellia sinensis var. sinensis
CSS0022078 Camellia sinensis var. sinensis
CSS0027078 Camellia sinensis var. sinensis
CSS0033592 Camellia sinensis var. sinensis
CSS0035513 Camellia sinensis var. sinensis
CSS0039581 Camellia sinensis var. sinensis
CSS0045874 Camellia sinensis var. sinensis
CSS0047675 Camellia sinensis var. sinensis
DCAR_014830 Daucus carota
DCAR_017894 Daucus carota
DCAR_027681 Daucus carota
Dinv25954 Davidia involucrata
Dinv31404 Davidia involucrata
Dinv35653 Davidia involucrata
Dinv37219 Davidia involucrata
Duzib093G0032 Durio zibethinus
Duzib106G0638 Durio zibethinus
Duzib114G0766 Durio zibethinus
Duzib128G0163 Durio zibethinus
ECA233G3424 Erigeron canadensis
ECA238G3596 Erigeron canadensis
ECA238G3635 Erigeron canadensis
ECA248G0979 Erigeron canadensis
EL10Ac2g03465 Beta vulgaris
EL10Ac7g17299 Beta vulgaris
Eucgr.J01167 Eucalyptus grandis
Eucgr.K03173 Eucalyptus grandis
FAN01G2102 Fragaria x ananassa
FAN02G2099 Fragaria x ananassa
FAN05G4012 Fragaria x ananassa
FAN06G2913 Fragaria x ananassa
FAN06G4662 Fragaria x ananassa
FAN09G1592 Fragaria x ananassa
FAN10G4143 Fragaria x ananassa
FAN14G3656 Fragaria x ananassa
FvH4_6g14620 Fragaria vesca
FvH4_7g21020 Fragaria vesca
Glyma.02G095900 Glycine max
Glyma.03G173900 Glycine max
Glyma.10G045600 Glycine max
Glyma.13G133500 Glycine max
Glyma.18G285600 Glycine max
Glyma.19G174800 Glycine max
Gohir.A01G219300 Gossypium hirsutum
Gohir.A04G079000 Gossypium hirsutum
Gohir.A04G079050 Gossypium hirsutum
Gohir.A09G159300 Gossypium hirsutum
Gohir.A10G211100 Gossypium hirsutum
Gohir.D01G208400 Gossypium hirsutum
Gohir.D04G118200 Gossypium hirsutum
Gohir.D05G299400 Gossypium hirsutum
Gohir.D09G154900 Gossypium hirsutum
Gohir.D10G219400 Gossypium hirsutum
Gorai.002G253500 Gossypium raimondii
Gorai.006G176300 Gossypium raimondii
Gorai.009G316900 Gossypium raimondii
Gorai.009G423300 Gossypium raimondii
Gorai.011G246100 Gossypium raimondii
GSVIVG01005967001 Vitis vinifera
GSVIVG01025600001 Vitis vinifera
HanXRQChr01g0026531 Helianthus annuus
HanXRQChr07g0188581 Helianthus annuus
HanXRQChr07g0196121 Helianthus annuus
HanXRQChr08g0219991 Helianthus annuus
HanXRQChr14g0453801 Helianthus annuus
HanXRQChr14g0457611 Helianthus annuus
Haze_16989 Corylus avellana
Haze_20717 Corylus avellana
Hma1.2p1_0111F.1_g053220 Hydrangea macrophylla
Hma1.2p1_0402F.1_g145150 Hydrangea macrophylla
HPP92_006594 Vanilla planifolia
HPP92_012464 Vanilla planifolia
HPP92_019094 Vanilla planifolia
HPP92_019812 Vanilla planifolia
Hund22420 Selenicereus undatus
Hund24066 Selenicereus undatus
Lalb_Chr02g0153251 Lupinus albus
Lalb_Chr10g0091961 Lupinus albus
Lalb_Chr17g0336311 Lupinus albus
Lalb_Chr17g0336321 Lupinus albus
Lalb_Chr21g0314431 Lupinus albus
Lj1g0001009 Lotus japonicus
Lj1g0026714 Lotus japonicus
Lj2C101T4 Lonicera japonica
Lj3A973T35 Lonicera japonica
Lj5g0022058 Lotus japonicus
Lj5P541T33 Lonicera japonica
Lj6P795T70 Lonicera japonica
Lj8C90T10 Lonicera japonica
Lsat_1_v5_gn_2_111220 Lactuca sativa
Lsat_1_v5_gn_8_18361 Lactuca sativa
Manes.07G109400 Manihot esculenta
Manes.08G076600 Manihot esculenta
Manes.09G085700 Manihot esculenta
Manes.10G036800 Manihot esculenta
MBI05_g07856_MAGBIO Magnolia biondii
MD01G1120100 Malus domestica
MD01G1120200 Malus domestica
MD04G1118500 Malus domestica
MD07G1189400 Malus domestica
MD12G1134100 Malus domestica
MD12G1134200 Malus domestica
MD12G1134300 Malus domestica
MD12G1134400 Malus domestica
Medtr1g067570 Medicago truncatula
Medtr5g042180 Medicago truncatula
Medtr7g022810 Medicago truncatula
MELO3C003096.2 Cucumis melo
MELO3C009285.2 Cucumis melo
MELO3C025479.2 Cucumis melo
Migut.J00378 Erythranthe guttata
Migut.L01626 Erythranthe guttata
Migut.L01627 Erythranthe guttata
Migut.L01629 Erythranthe guttata
Migut.M00429 Erythranthe guttata
MSTRG.10276 Avicennia marina
MSTRG.19112 Avicennia marina
MSTRG.26749 Avicennia marina
MSTRG.5695 Avicennia marina
MSTRG.6584 Avicennia marina
Nitab4.5_0000914g0260 Nicotiana tabacum
Nitab4.5_0002684g0130 Nicotiana tabacum
Nitab4.5_0002995g0030 Nicotiana tabacum
Nitab4.5_0004055g0060 Nicotiana tabacum
Nitab4.5_0004207g0030 Nicotiana tabacum
Nitab4.5_0010623g0020 Nicotiana tabacum
Nn2g10515 Nelumbo nucifera
Nn2g12861 Nelumbo nucifera
Nn4g22943 Nelumbo nucifera
Oeu007595.1 Olea europaea
Oeu015904.1 Olea europaea
Oeu023869.2 Olea europaea
Oeu023870.1 Olea europaea
Oeu032114.2 Olea europaea
Oeu049192.1 Olea europaea
Oeu050649.1 Olea europaea
Oeu060059.1 Olea europaea
Os03g0280700 Oryza sativa ssp. japonica
Os03g0287700 Oryza sativa ssp. japonica
Os03g0819700 Oryza sativa ssp. japonica
Os05g0116500 Oryza sativa ssp. japonica
Peaxi162Scf00015g02321 Petunia axillaris
Peaxi162Scf00039g00072 Petunia axillaris
PGR004G2455 Punica granatum
PGR044G2099 Punica granatum
PGSC0003DMG400023513 Solanum tuberosum
PGSC0003DMG400023907 Solanum tuberosum
PGSC0003DMG400031217 Solanum tuberosum
Phvul.001G171300 Phaseolus vulgaris
Phvul.007G159500 Phaseolus vulgaris
Phvul.008G016000 Phaseolus vulgaris
Potri.006G213700 Populus trichocarpa
Potri.010G211700 Populus trichocarpa
Potri.016G080200 Populus trichocarpa
Prupe.2G227000 Prunus persica
Prupe.6G247900 Prunus persica
Psat3g186760 Pisum sativum
Psat6g068640 Pisum sativum
PSO206G0030 Papaver somniferum
PSO339G0404 Papaver somniferum
QL07p046595 Quercus lobata
QL08p057863 Quercus lobata
RcHm_v2.0_Chr1g0365411 Rosa chinensis
RcHm_v2.0_Chr3g0467721 Rosa chinensis
Rhsim03G0127500 Rhododendron simsii
Rhsim05G0186600 Rhododendron simsii
Sabra06G0164600 Salix brachista
Sabra08G0035300 Salix brachista
Sabra10G0163700 Salix brachista
Sabra16G0088100 Salix brachista
SalBow3G1915 Salvia bowleyana
SalBow4G0352 Salvia bowleyana
SalBow4G1789 Salvia bowleyana
SalBow4G2077 Salvia bowleyana
SalBow4G2849 Salvia bowleyana
SalBow7G0683 Salvia bowleyana
Sc01g0003870 Simmondsia chinensis
Sc20g0002420 Simmondsia chinensis
Sc20g0004420 Simmondsia chinensis
Sed0000481 Sechium edule
Sed0002534 Sechium edule
Sed0005503 Sechium edule
Sed0012455 Sechium edule
SGA_v2.0_scaffold126G33842 Striga asiatica
SGA_v2.0_scaffold34G13758 Striga asiatica
SGA_v2.0_scaffold75G24914 Striga asiatica
SHI12638 Sapria himalayana
SHI12639 Sapria himalayana
Solyc05g054770.3 Solanum lycopersicum
Solyc09g005750.3 Solanum lycopersicum
Sopen05g033240 Solanum pennellii
Sopen09g001640 Solanum pennellii
Sp4g19710 Schrenkiella parvula
Sp5g08790 Schrenkiella parvula
SpUn0099_0010 Schrenkiella parvula
SpUn0165_0030 Schrenkiella parvula
TAR157G0003 Trochodendron aralioides
TAR369G0481 Trochodendron aralioides
TAR633G1128 Trochodendron aralioides
TAR636G3674 Trochodendron aralioides
TAR680G0007 Trochodendron aralioides
THA.LOC104805416 Tarenaya hassleriana
THA.LOC104806591 Tarenaya hassleriana
THA.LOC104823434 Tarenaya hassleriana
THA.LOC104824254 Tarenaya hassleriana
Thecc.05G046700 Theobroma cacao
Thecc.10G058600 Theobroma cacao
Thhalv10010116m.g Eutrema salsugineum
Thhalv10016240m.g Eutrema salsugineum
Thhalv10016572m.g Eutrema salsugineum
TPR.G15507 Trifolium pratense
TPR.G23073 Trifolium pratense
TWI15G0462 Tripterygium wilfordii
TWI38G1436 Tripterygium wilfordii
TWI74G0701 Tripterygium wilfordii
TWI77G0326 Tripterygium wilfordii
unitig_21.g21054 Utricularia gibba
unitig_26.g9208 Utricularia gibba
unitig_744.g24663 Utricularia gibba
unitig_749.g14258 Utricularia gibba
unitig_749.g14259 Utricularia gibba
unitig_8.g4095 Utricularia gibba
unitig_8.g4096 Utricularia gibba
vmacro07138 Vaccinium macrocarpon
vmacro07139 Vaccinium macrocarpon
vmacro20108 Vaccinium macrocarpon
VMungo0331G1931 Vigna mungo
VMungo0720G0853 Vigna mungo
VMungo1383G1185 Vigna mungo
VMungo1383G2286 Vigna mungo
Zm00001eb266250 Zea mays
Zm00001eb397390 Zea mays

User provided reference genes

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