Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p22860 Brassica napus
A08p11430 Brassica napus
Actinidia04517 Actinidia chinensis
Actinidia05771 Actinidia chinensis
Actinidia08824 Actinidia chinensis
Actinidia23538 Actinidia chinensis
Actinidia40123 Actinidia chinensis
Ah.06g192210 Amaranthus hybridus
AL7G41180 Arabidopsis lyrata
Aqoxy2G03450 Aquilegia oxysepala
Aqoxy5G00414 Aquilegia oxysepala
Aqoxy7G01891 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5Q4L3S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.772U37 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B6YHT2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D6QP22 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E1MHT7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FEJ3DR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IWSZ9T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KCS4U6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LR1XSI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VQC867 Arachis hypogaea
AT4G14746 Arabidopsis thaliana
ATR0083G065 Amborella trichopoda
ATR0665G594 Amborella trichopoda
Atru.chr1.3213 Acer truncatum
Atru.chr1.3214 Acer truncatum
Atru.chr1.3215 Acer truncatum
Atru.chr2.796 Acer truncatum
Atru.chr4.2379 Acer truncatum
Atru.chr4.2403 Acer truncatum
AUR62001027 Chenopodium quinoa
AUR62004925 Chenopodium quinoa
AUR62034695 Chenopodium quinoa
BcaB04g18257 Brassica carinata
BcaC07g37847 Brassica carinata
BcaC09g50153 Brassica carinata
BcaNung00339 Brassica carinata
BolC1t02771H Brassica oleracea
BolC8t48234H Brassica oleracea
BraA01t02200Z Brassica rapa
BraA08t33136Z Brassica rapa
C01p28580 Brassica napus
CAN.G1402.15 Capsicum annuum
CAN.G438.100 Capsicum annuum
CANSAT54G0589 Cannabis sativa
CANSAT78G1868 Cannabis sativa
CARHR221230 Cardamine hirsuta
CARHR221240 Cardamine hirsuta
Carub.0007s2740 Capsella rubella
Ca_10049_v3 Cicer arietinum L.
Ca_12159_v3 Cicer arietinum L.
Cc02_g31880 Coffea canephora
Cc02_g31910 Coffea canephora
Cc03_g04200 Coffea canephora
Cc03_g05680 Coffea canephora
CDE10G0403 Ceratophyllum demersum
CDE10G1332 Ceratophyllum demersum
Cfa006449 Carpinus fangiana
Cfa008455 Carpinus fangiana
Ciclev10002439m.g Citrus clementina
Ciclev10005865m.g Citrus clementina
Ciclev10026432m.g Citrus clementina
CiPaw.01G196100 Carya illinoinensis
CiPaw.01G241400 Carya illinoinensis
CiPaw.02G121800 Carya illinoinensis
CiPaw.07G065300 Carya illinoinensis
CiPaw.08G124900 Carya illinoinensis
ClCG02G016520 Citrullus lanatus
ClCG06G006430 Citrullus lanatus
ClCG09G002410 Citrullus lanatus
COL.COLO4_15304 Corchorus olitorius
COL.COLO4_15307 Corchorus olitorius
COL.COLO4_21556 Corchorus olitorius
COL.COLO4_30316 Corchorus olitorius
COL.COLO4_34949 Corchorus olitorius
Cpa.g.sc117.77 Carica papaya
Cpa.g.sc44.114 Carica papaya
CsaV3_2G004250 Cucumis sativus L.
CsaV3_2G013470 Cucumis sativus L.
CSS0016789 Camellia sinensis var. sinensis
CSS0047801 Camellia sinensis var. sinensis
DCAR_006621 Daucus carota
DCAR_011278 Daucus carota
DCAR_021322 Daucus carota
DCAR_027239 Daucus carota
Dinv04802 Davidia involucrata
Dinv05369 Davidia involucrata
Dinv14038 Davidia involucrata
Dinv36594 Davidia involucrata
Dinv44571 Davidia involucrata
Duzib052G0517 Durio zibethinus
Duzib128G1166 Durio zibethinus
Duzib151G0288 Durio zibethinus
Duzib192G0363 Durio zibethinus
Duzib212G0666 Durio zibethinus
ECA232G1977 Erigeron canadensis
ECA234G2382 Erigeron canadensis
ECA247G1292 Erigeron canadensis
EL10Ac3g06455 Beta vulgaris
EL10Ac4g09114 Beta vulgaris
Eucgr.B00933 Eucalyptus grandis
Eucgr.B00935 Eucalyptus grandis
Eucgr.B01027 Eucalyptus grandis
Eucgr.F02570 Eucalyptus grandis
Eucgr.H03419 Eucalyptus grandis
FAN02G0768 Fragaria x ananassa
FAN02G1724 Fragaria x ananassa
FAN05G0128 Fragaria x ananassa
FAN05G4355 Fragaria x ananassa
FAN09G0076 Fragaria x ananassa
FAN12G2065 Fragaria x ananassa
FAN14G0185 Fragaria x ananassa
FAN14G0966 Fragaria x ananassa
FAN14G3418 Fragaria x ananassa
FAN14G5962 Fragaria x ananassa
FAN17G1868 Fragaria x ananassa
FAN17G2404 Fragaria x ananassa
FAN22G1248 Fragaria x ananassa
FAN22G2357 Fragaria x ananassa
FvH4_4g00650 Fragaria vesca
FvH4_4g01001 Fragaria vesca
FvH4_4g01002 Fragaria vesca
FvH4_6g03170 Fragaria vesca
FvH4_6g03180 Fragaria vesca
FvH4_6g30801 Fragaria vesca
FvH4_6g30802 Fragaria vesca
Glyma.02G004800 Glycine max
Glyma.07G033900 Glycine max
Glyma.08G208200 Glycine max
Glyma.10G003600 Glycine max
Glyma.10G161500 Glycine max
Glyma.10G244800 Glycine max
Glyma.20G224200 Glycine max
Gohir.A02G033803 Gossypium hirsutum
Gohir.A05G126700 Gossypium hirsutum
Gohir.A06G059700 Gossypium hirsutum
Gohir.A08G240401 Gossypium hirsutum
Gohir.A09G218600 Gossypium hirsutum
Gohir.A13G104800 Gossypium hirsutum
Gohir.D02G040700 Gossypium hirsutum
Gohir.D05G127600 Gossypium hirsutum
Gohir.D06G057900 Gossypium hirsutum
Gohir.D08G261001 Gossypium hirsutum
Gohir.D09G220900 Gossypium hirsutum
Gohir.D13G108100 Gossypium hirsutum
Gorai.004G279100 Gossypium raimondii
Gorai.005G045100 Gossypium raimondii
Gorai.006G241900 Gossypium raimondii
Gorai.009G131700 Gossypium raimondii
Gorai.010G068000 Gossypium raimondii
Gorai.013G121200 Gossypium raimondii
GSVIVG01018031001 Vitis vinifera
GSVIVG01021829001 Vitis vinifera
HanXRQChr02g0045141 Helianthus annuus
HanXRQChr04g0096381 Helianthus annuus
HanXRQChr04g0106661 Helianthus annuus
HanXRQChr09g0260681 Helianthus annuus
HanXRQChr11g0326061 Helianthus annuus
Haze_04344 Corylus avellana
Haze_11227 Corylus avellana
Hma1.2p1_0332F.1_g127620 Hydrangea macrophylla
Hma1.2p1_0549F.1_g176920 Hydrangea macrophylla
Hma1.2p1_0902F.1_g234743 Hydrangea macrophylla
HPP92_007928 Vanilla planifolia
Hund06961 Selenicereus undatus
Hund12089 Selenicereus undatus
Lalb_Chr02g0148751 Lupinus albus
Lalb_Chr03g0037431 Lupinus albus
Lj3A729T51 Lonicera japonica
Lj3g0011923 Lotus japonicus
Lj5A64T49 Lonicera japonica
Lj5g0013179 Lotus japonicus
Lj6g0008601 Lotus japonicus
Lj7A639T57 Lonicera japonica
Lj9A505T67 Lonicera japonica
Lsat_1_v5_gn_1_34081 Lactuca sativa
Lsat_1_v5_gn_1_7181 Lactuca sativa
Lsat_1_v5_gn_4_134060 Lactuca sativa
Manes.04G120300 Manihot esculenta
Manes.09G154100 Manihot esculenta
Manes.11G050600 Manihot esculenta
Manes.15G032300 Manihot esculenta
Mapoly0004s0132 Marchantia polymorpha
MBI05_g12591_MAGBIO Magnolia biondii
MBI11_g35356_MAGBIO Magnolia biondii
MD04G1222300 Malus domestica
MD04G1222400 Malus domestica
MD12G1238500 Malus domestica
MD13G1198400 Malus domestica
MD16G1198500 Malus domestica
MD17G1198900 Malus domestica
Medtr1g041410 Medicago truncatula
Medtr1g080990 Medicago truncatula
Medtr4g011800 Medicago truncatula
Medtr7g114880 Medicago truncatula
Medtr7g114890 Medicago truncatula
MELO3C004369.2 Cucumis melo
MELO3C014289.2 Cucumis melo
Migut.I00835 Erythranthe guttata
Migut.N00207 Erythranthe guttata
Migut.N01902 Erythranthe guttata
MSTRG.24727 Avicennia marina
MSTRG.28024 Avicennia marina
MSTRG.4057 Avicennia marina
MSTRG.9955 Avicennia marina
Nitab4.5_0000085g0010 Nicotiana tabacum
Nitab4.5_0000410g0290 Nicotiana tabacum
Nitab4.5_0001046g0030 Nicotiana tabacum
Nitab4.5_0004469g0090 Nicotiana tabacum
Nitab4.5_0005582g0100 Nicotiana tabacum
Nitab4.5_0013051g0010 Nicotiana tabacum
Nn1g02424 Nelumbo nucifera
Nn2g11853 Nelumbo nucifera
Nn6g34151 Nelumbo nucifera
Oeu021873.1 Olea europaea
Oeu021954.1 Olea europaea
Oeu038430.1 Olea europaea
Oeu064254.1 Olea europaea
Os03g0161500 Oryza sativa ssp. japonica
Os10g0419700 Oryza sativa ssp. japonica
Os11g0582000 Oryza sativa ssp. japonica
Peaxi162Scf00015g00535 Petunia axillaris
Peaxi162Scf00282g00124 Petunia axillaris
Peaxi162Scf00316g01013 Petunia axillaris
PGR004G0689 Punica granatum
PGR102G2476 Punica granatum
PGR142G0901 Punica granatum
PGSC0003DMG400006454 Solanum tuberosum
PGSC0003DMG400019429 Solanum tuberosum
Phvul.007G061100 Phaseolus vulgaris
Phvul.007G186900 Phaseolus vulgaris
Phvul.007G277600 Phaseolus vulgaris
Phvul.010G152100 Phaseolus vulgaris
Potri.001G176800 Populus trichocarpa
Potri.003G057700 Populus trichocarpa
Potri.005G051900 Populus trichocarpa
Potri.008G156800 Populus trichocarpa
Potri.010G082500 Populus trichocarpa
Potri.013G039300 Populus trichocarpa
Pp3c13_8450 Physcomitrium patens
Pp3c3_18430 Physcomitrium patens
Pp3c4_10000 Physcomitrium patens
Prupe.1G020200 Prunus persica
Prupe.3G075500 Prunus persica
Prupe.6G341400 Prunus persica
Psat6g104040 Pisum sativum
Psat6g146560 Pisum sativum
Psat7g253600 Pisum sativum
PSO063G6019 Papaver somniferum
PSO170G3456 Papaver somniferum
PSO210G4724 Papaver somniferum
PSO566G0113 Papaver somniferum
PSO782G0531 Papaver somniferum
PSO782G4178 Papaver somniferum
QL03p024990 Quercus lobata
QL05p025724 Quercus lobata
QL06p001273 Quercus lobata
QL06p001291 Quercus lobata
RcHm_v2.0_Chr3g0451431 Rosa chinensis
RcHm_v2.0_Chr3g0451451 Rosa chinensis
RcHm_v2.0_Chr4g0387581 Rosa chinensis
Rhsim04G0198400 Rhododendron simsii
Rhsim10G0108800 Rhododendron simsii
Sabra03G0033200 Salix brachista
Sabra05G0045600 Salix brachista
Sabra08G0119400 Salix brachista
Sabra10G0060600 Salix brachista
Sabra13G0036700 Salix brachista
SalBow2G1507 Salvia bowleyana
SalBow3G4166 Salvia bowleyana
SalBow4G2390 Salvia bowleyana
Sc09g0003860 Simmondsia chinensis
Sc13g0004670 Simmondsia chinensis
Sed0011123 Sechium edule
Sed0020511 Sechium edule
Sed0022414 Sechium edule
SEGI_01841 Sequoiadendron giganteum
SEGI_14834 Sequoiadendron giganteum
SEGI_28156 Sequoiadendron giganteum
SEGI_32269 Sequoiadendron giganteum
SEGI_36008 Sequoiadendron giganteum
SGA_v2.0_scaffold191G40444 Striga asiatica
SGA_v2.0_scaffold3661G54375 Striga asiatica
SGA_v2.0_scaffold43G16336 Striga asiatica
SMO340G0215 Selaginella moellendorffii
SMO356G0001 Selaginella moellendorffii
Solyc01g097470.4 Solanum lycopersicum
Solyc03g119900.4 Solanum lycopersicum
Solyc09g082570.3 Solanum lycopersicum
Sopen01g041140 Solanum pennellii
Sopen03g038780 Solanum pennellii
Sopen09g031430 Solanum pennellii
Sp7g12860 Schrenkiella parvula
TAR365G0040 Trochodendron aralioides
TAR636G3683 Trochodendron aralioides
THA.LOC104803053 Tarenaya hassleriana
THA.LOC104823419 Tarenaya hassleriana
THA.LOC104827557 Tarenaya hassleriana
Thecc.04G237600 Theobroma cacao
Thecc.05G286700 Theobroma cacao
Thecc.06G081100 Theobroma cacao
Thecc.09G117000 Theobroma cacao
Thhalv10026216m.g Eutrema salsugineum
TPR.G25193 Trifolium pratense
TPR.G27503 Trifolium pratense
TPR.G30949 Trifolium pratense
TPR.G38667 Trifolium pratense
TWI12G0977 Tripterygium wilfordii
TWI12G0984 Tripterygium wilfordii
TWI12G0998 Tripterygium wilfordii
TWI12G1416 Tripterygium wilfordii
TWI56G1177 Tripterygium wilfordii
TWI73G0018 Tripterygium wilfordii
unitig_21.g20056 Utricularia gibba
unitig_899.g14874 Utricularia gibba
vmacro05241 Vaccinium macrocarpon
vmacro08364 Vaccinium macrocarpon
VMungo0331G0720 Vigna mungo
VMungo0720G0605 Vigna mungo
VMungo0720G2123 Vigna mungo
VMungo0720G3013 Vigna mungo
Zm00001eb004630 Zea mays
Zm00001eb047790 Zea mays
Zm00001eb047800 Zea mays
Zm00001eb200520 Zea mays

User provided reference genes

Program Settings