Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p26710 Brassica napus
A04p20660 Brassica napus
A05p37640 Brassica napus
A07p18020 Brassica napus
A10p30000 Brassica napus
Aa31LG3G5130 Aethionema arabicum
Aa31LG5G8620 Aethionema arabicum
Actinidia03858 Actinidia chinensis
Actinidia03966 Actinidia chinensis
Actinidia37774 Actinidia chinensis
Ah.13g072020 Amaranthus hybridus
AL172U10020 Arabidopsis lyrata
AL3G23250 Arabidopsis lyrata
AL4G20930 Arabidopsis lyrata
AL6G16470 Arabidopsis lyrata
Aqoxy1G00592 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.C1Z4ZG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CN9KST Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P25GE7 Arachis hypogaea
AT2G27180 Arabidopsis thaliana
AT3G11690 Arabidopsis thaliana
AT5G06380 Arabidopsis thaliana
ATR0618G098 Amborella trichopoda
ATR0697G127 Amborella trichopoda
Atru.chr3.3053 Acer truncatum
Atru.chr3.3062 Acer truncatum
Atru.chr8.1294 Acer truncatum
AUR62001580 Chenopodium quinoa
AUR62020202 Chenopodium quinoa
AUR62036330 Chenopodium quinoa
AUR62038433 Chenopodium quinoa
AUR62038434 Chenopodium quinoa
AUR62041406 Chenopodium quinoa
BcaB01g03054 Brassica carinata
BcaB02g10075 Brassica carinata
BcaB04g21123 Brassica carinata
BcaB05g21671 Brassica carinata
BcaB06g25590 Brassica carinata
BcaB06g28119 Brassica carinata
BcaC01g04926 Brassica carinata
BcaC02g08275 Brassica carinata
BcaC02g10859 Brassica carinata
BcaC03g13168 Brassica carinata
BcaC05g29339 Brassica carinata
BcaC05g29340 Brassica carinata
BcaC09g48204 Brassica carinata
BolC1t05298H Brassica oleracea
BolC2t06234H Brassica oleracea
BolC3t15546H Brassica oleracea
BolC4t23935H Brassica oleracea
BolC4t27175H Brassica oleracea
BolC5t34286H Brassica oleracea
BolC9t59787H Brassica oleracea
BraA01t04167Z Brassica rapa
BraA02t04879Z Brassica rapa
BraA03t11883Z Brassica rapa
BraA04t17639Z Brassica rapa
BraA05t22561Z Brassica rapa
BraA07t29520Z Brassica rapa
BraA10t45040Z Brassica rapa
C02p02700 Brassica napus
C03p32020 Brassica napus
C04p24370 Brassica napus
C04p56460 Brassica napus
C05p56220 Brassica napus
C09p70410 Brassica napus
CANSAT54G0233 Cannabis sativa
CANSAT64G1197 Cannabis sativa
CARHR086240 Cardamine hirsuta
CARHR119660 Cardamine hirsuta
CARHR207130 Cardamine hirsuta
Carub.0003s1102 Capsella rubella
Carub.0004s0772 Capsella rubella
Carub.0006s0527 Capsella rubella
Ca_01619_v3 Cicer arietinum L.
Ca_09078_v3 Cicer arietinum L.
Ca_11664_v3 Cicer arietinum L.
Ca_19491_v3 Cicer arietinum L.
Cc06_g06920 Coffea canephora
CDE07G0851 Ceratophyllum demersum
Cfa010216 Carpinus fangiana
Cfa013645 Carpinus fangiana
Cfa020076 Carpinus fangiana
Cfa021930 Carpinus fangiana
Ciclev10012921m.g Citrus clementina
Ciclev10029482m.g Citrus clementina
CiPaw.09G023600 Carya illinoinensis
CiPaw.10G020500 Carya illinoinensis
CiPaw.13G126200 Carya illinoinensis
ClCG02G024100 Citrullus lanatus
ClCG06G014180 Citrullus lanatus
ClCG10G018030 Citrullus lanatus
COL.COLO4_25368 Corchorus olitorius
COL.COLO4_29503 Corchorus olitorius
Cpa.g.sc103.48 Carica papaya
Cpa.g.sc5.177 Carica papaya
CsaV3_1G004500 Cucumis sativus L.
CsaV3_3G038280 Cucumis sativus L.
CSS0022343 Camellia sinensis var. sinensis
DCAR_012256 Daucus carota
DCAR_013457 Daucus carota
DCAR_016911 Daucus carota
DCAR_020681 Daucus carota
Dinv18867 Davidia involucrata
Duzib093G1955 Durio zibethinus
Duzib106G0588 Durio zibethinus
Duzib128G1567 Durio zibethinus
Duzib150G1621 Durio zibethinus
Duzib168G1208 Durio zibethinus
Duzib170G0914 Durio zibethinus
ECA233G4441 Erigeron canadensis
ECA238G4628 Erigeron canadensis
ECA248G1421 Erigeron canadensis
EL10Ac5g11818 Beta vulgaris
EL10Ac7g16264 Beta vulgaris
EL10Ac7g16265 Beta vulgaris
Eucgr.A02549 Eucalyptus grandis
Eucgr.K01912 Eucalyptus grandis
FAN02G0183 Fragaria x ananassa
FAN05G4348 Fragaria x ananassa
FAN05G4575 Fragaria x ananassa
FAN09G2632 Fragaria x ananassa
FAN11G1146 Fragaria x ananassa
FAN14G3941 Fragaria x ananassa
FAN21G1873 Fragaria x ananassa
FvH4_3g26780 Fragaria vesca
FvH4_6g20920 Fragaria vesca
Glyma.02G187300 Glycine max
Glyma.03G204500 Glycine max
Glyma.06G308300 Glycine max
Glyma.10G084600 Glycine max
Glyma.10G084900 Glycine max
Glyma.10G085200 Glycine max
Glyma.12G190900 Glycine max
Glyma.13G310800 Glycine max
Glyma.19G201900 Glycine max
Gohir.A01G135600 Gossypium hirsutum
Gohir.A01G199800 Gossypium hirsutum
Gohir.A04G058400 Gossypium hirsutum
Gohir.A05G077300 Gossypium hirsutum
Gohir.A09G100800 Gossypium hirsutum
Gohir.A09G132300 Gossypium hirsutum
Gohir.D01G122800 Gossypium hirsutum
Gohir.D01G189800 Gossypium hirsutum
Gohir.D04G092900 Gossypium hirsutum
Gohir.D05G080100 Gossypium hirsutum
Gohir.D09G100200 Gossypium hirsutum
Gohir.D09G128600 Gossypium hirsutum
Gorai.002G153700 Gossypium raimondii
Gorai.002G233600 Gossypium raimondii
Gorai.006G117400 Gossypium raimondii
Gorai.006G147300 Gossypium raimondii
Gorai.009G081700 Gossypium raimondii
Gorai.009G394800 Gossypium raimondii
HanXRQChr01g0026141 Helianthus annuus
HanXRQChr02g0052861 Helianthus annuus
HanXRQChr07g0196581 Helianthus annuus
HanXRQChr13g0398711 Helianthus annuus
HanXRQChr14g0453261 Helianthus annuus
Haze_20117 Corylus avellana
Haze_23603 Corylus avellana
Hma1.2p1_0401F.1_g144760 Hydrangea macrophylla
Hma1.2p1_0969F.1_g242560 Hydrangea macrophylla
Hma1.2p1_1811F.1_g303610 Hydrangea macrophylla
HPP92_013936 Vanilla planifolia
HPP92_016637 Vanilla planifolia
HPP92_016658 Vanilla planifolia
HPP92_018633 Vanilla planifolia
HPP92_019539 Vanilla planifolia
HPP92_026333 Vanilla planifolia
HPP92_028255 Vanilla planifolia
Lalb_Chr01g0005791 Lupinus albus
Lalb_Chr01g0017741 Lupinus albus
Lalb_Chr06g0172901 Lupinus albus
Lalb_Chr14g0375911 Lupinus albus
Lalb_Chr19g0136101 Lupinus albus
Lalb_Chr20g0111231 Lupinus albus
Lalb_Chr25g0287861 Lupinus albus
Lj1g0010142 Lotus japonicus
Lj1P1059T26 Lonicera japonica
Lj3g0023279 Lotus japonicus
Lj3g0026917 Lotus japonicus
Lj5g0013690 Lotus japonicus
Lj7A139T11 Lonicera japonica
Lj7A141T17 Lonicera japonica
Lsat_1_v5_gn_1_56861 Lactuca sativa
Lsat_1_v5_gn_2_101961 Lactuca sativa
Lsat_1_v5_gn_6_34001 Lactuca sativa
Manes.06G067800 Manihot esculenta
Manes.08G036700 Manihot esculenta
Manes.09G042300 Manihot esculenta
Manes.11G104560 Manihot esculenta
MBI05_g12629_MAGBIO Magnolia biondii
MD03G1160300 Malus domestica
MD12G1045100 Malus domestica
MD14G1044000 Malus domestica
MD15G1108700 Malus domestica
Medtr1g054990 Medicago truncatula
Medtr2g087830 Medicago truncatula
Medtr7g106820 Medicago truncatula
MELO3C009569.2 Cucumis melo
MELO3C014692.2 Cucumis melo
MELO3C017376.2 Cucumis melo
Migut.D02459 Erythranthe guttata
Migut.J00733 Erythranthe guttata
Migut.L01846 Erythranthe guttata
Migut.N02433 Erythranthe guttata
Migut.O00547 Erythranthe guttata
MSTRG.10414 Avicennia marina
MSTRG.17669 Avicennia marina
MSTRG.21001 Avicennia marina
MSTRG.5912 Avicennia marina
Nitab4.5_0000157g0150 Nicotiana tabacum
Nitab4.5_0000721g0110 Nicotiana tabacum
Nitab4.5_0000835g0060 Nicotiana tabacum
Nitab4.5_0000875g0050 Nicotiana tabacum
Nitab4.5_0001504g0100 Nicotiana tabacum
Nitab4.5_0002183g0040 Nicotiana tabacum
Nitab4.5_0002426g0050 Nicotiana tabacum
Nitab4.5_0003557g0010 Nicotiana tabacum
Nitab4.5_0005542g0010 Nicotiana tabacum
Nitab4.5_0006895g0010 Nicotiana tabacum
Nn2g12506 Nelumbo nucifera
Nn2g12507 Nelumbo nucifera
Nn2g14406 Nelumbo nucifera
Nn4g24817 Nelumbo nucifera
Nn6g34593 Nelumbo nucifera
Nn8g39322 Nelumbo nucifera
Oeu020161.1 Olea europaea
Oeu026356.1 Olea europaea
Oeu035663.1 Olea europaea
Oeu045022.1 Olea europaea
Oeu048818.1 Olea europaea
Oeu058126.1 Olea europaea
Oeu058188.1 Olea europaea
Os03g0650300 Oryza sativa ssp. japonica
Os03g0759125 Oryza sativa ssp. japonica
Os06g0336350 Oryza sativa ssp. japonica
Os12g0621400 Oryza sativa ssp. japonica
Peaxi162Scf00098g00155 Petunia axillaris
Peaxi162Scf00203g00052 Petunia axillaris
Peaxi162Scf00345g00619 Petunia axillaris
Peaxi162Scf00717g00001 Petunia axillaris
PGR004G1845 Punica granatum
PGR119G2356 Punica granatum
PGR142G1790 Punica granatum
PGSC0003DMG400002991 Solanum tuberosum
PGSC0003DMG400005908 Solanum tuberosum
PGSC0003DMG400013131 Solanum tuberosum
PGSC0003DMG400021375 Solanum tuberosum
PGSC0003DMG400028135 Solanum tuberosum
Phvul.001G198100 Phaseolus vulgaris
Phvul.005G117300 Phaseolus vulgaris
Phvul.007G265700 Phaseolus vulgaris
Phvul.007G278000 Phaseolus vulgaris
Potri.004G190500 Populus trichocarpa
Potri.006G200100 Populus trichocarpa
Potri.009G151600 Populus trichocarpa
Potri.016G066300 Populus trichocarpa
Prupe.6G148600 Prunus persica
Prupe.7G090300 Prunus persica
Psat0s4652g0040 Pisum sativum
Psat3g027400 Pisum sativum
Psat5g262960 Pisum sativum
Psat7g203600 Pisum sativum
PSO478G4470 Papaver somniferum
PSO782G0157 Papaver somniferum
QL01p018970 Quercus lobata
QL07p026590 Quercus lobata
RcHm_v2.0_Chr3g0477261 Rosa chinensis
RcHm_v2.0_Chr5g0049201 Rosa chinensis
Rhsim01G0198700 Rhododendron simsii
Rhsim03G0063200 Rhododendron simsii
Sabra06G0153900 Salix brachista
Sabra09G0120100 Salix brachista
Sabra16G0067700 Salix brachista
SalBow3G3909 Salvia bowleyana
SalBow6G1158 Salvia bowleyana
Sc07g0006380 Simmondsia chinensis
Sed0003384 Sechium edule
Sed0011955 Sechium edule
Sed0012265 Sechium edule
Sed0017347 Sechium edule
Sed0018421 Sechium edule
SEGI_01786 Sequoiadendron giganteum
SEGI_38132 Sequoiadendron giganteum
SGA_v2.0_scaffold112G31684 Striga asiatica
SGA_v2.0_scaffold31G12825 Striga asiatica
SGA_v2.0_scaffold392G50686 Striga asiatica
Solyc01g009250.3 Solanum lycopersicum
Solyc06g073850.1 Solanum lycopersicum
Solyc10g081700.3 Solanum lycopersicum
Solyc11g071780.1 Solanum lycopersicum
Sopen01g002770 Solanum pennellii
Sopen01g004740 Solanum pennellii
Sopen06g030250 Solanum pennellii
Sopen10g032210 Solanum pennellii
Sopen11g029450 Solanum pennellii
Sp3g09920 Schrenkiella parvula
Sp4g09980 Schrenkiella parvula
Sp6g36470 Schrenkiella parvula
TAR369G1029 Trochodendron aralioides
TAR623G1549 Trochodendron aralioides
THA.LOC104800502 Tarenaya hassleriana
THA.LOC104809949 Tarenaya hassleriana
THA.LOC104816625 Tarenaya hassleriana
THA.LOC104816969 Tarenaya hassleriana
Thecc.05G109600 Theobroma cacao
Thecc.09G268500 Theobroma cacao
Thhalv10002111m.g Eutrema salsugineum
Thhalv10016087m.g Eutrema salsugineum
Thhalv10021370m.g Eutrema salsugineum
TPR.G21240 Trifolium pratense
TPR.G34437 Trifolium pratense
TPR.G4206 Trifolium pratense
TPR.G4624 Trifolium pratense
TWI31G1059 Tripterygium wilfordii
TWI53G1102 Tripterygium wilfordii
TWI74G1501 Tripterygium wilfordii
unitig_21.g20392 Utricularia gibba
unitig_8.g4286 Utricularia gibba
VMungo0720G2852 Vigna mungo
VMungo0720G2869 Vigna mungo
VMungo1080G0285 Vigna mungo
VMungo1383G1576 Vigna mungo
Zm00001eb052980 Zea mays
Zm00001eb218490 Zea mays

User provided reference genes

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