Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p29150 Brassica napus
A05p07990 Brassica napus
A08p35690 Brassica napus
A10p05940 Brassica napus
Aa31LG1G6680 Aethionema arabicum
Aa31LG7G13540 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.292 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.294 Anthoceros agrestis
Actinidia08562 Actinidia chinensis
Actinidia13792 Actinidia chinensis
Actinidia15479 Actinidia chinensis
Actinidia25126 Actinidia chinensis
Actinidia29141 Actinidia chinensis
Ah.08g220420 Amaranthus hybridus
AL1G17530 Arabidopsis lyrata
AL4G34990 Arabidopsis lyrata
AL8G35360 Arabidopsis lyrata
Aqoxy139s001 Aquilegia oxysepala
Aqoxy190s001 Aquilegia oxysepala
Aqoxy1G00743 Aquilegia oxysepala
Aqoxy2G02452 Aquilegia oxysepala
Aqoxy4G02092 Aquilegia oxysepala
Aqoxy6G01839 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.05M2SK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.616VX8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.864V7V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FQHN5H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RTCN1G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VBF430 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VSZL5T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y5ZZLQ Arachis hypogaea
AT1G07380 Arabidopsis thaliana
AT2G38010 Arabidopsis thaliana
AT5G58980 Arabidopsis thaliana
ATR0618G176 Amborella trichopoda
ATR0661G027 Amborella trichopoda
ATR0661G297 Amborella trichopoda
ATR0661G302 Amborella trichopoda
ATR0661G568 Amborella trichopoda
Atru.chr13.171 Acer truncatum
Atru.chr3.4051 Acer truncatum
Atru.chr8.2131 Acer truncatum
AUR62001710 Chenopodium quinoa
AUR62020071 Chenopodium quinoa
BcaB02g09225 Brassica carinata
BcaB03g13398 Brassica carinata
BcaC02g11944 Brassica carinata
BcaC02g12916 Brassica carinata
BcaC02g12927 Brassica carinata
BolC4t22572H Brassica oleracea
BolC4t28141H Brassica oleracea
BolC5t29315H Brassica oleracea
BolC8t47100H Brassica oleracea
BraA04t18384Z Brassica rapa
BraA05t19765Z Brassica rapa
BraA08t35475Z Brassica rapa
BraA10t42857Z Brassica rapa
C04p09650 Brassica napus
C04p66360 Brassica napus
C05p05430 Brassica napus
C08p03000 Brassica napus
CAN.G1286.5 Capsicum annuum
CAN.G311.97 Capsicum annuum
CANSAT25G2653 Cannabis sativa
CANSAT35G1623 Cannabis sativa
CANSAT54G2631 Cannabis sativa
CARHR007090 Cardamine hirsuta
CARHR132570 Cardamine hirsuta
CARHR132580 Cardamine hirsuta
CARHR285210 Cardamine hirsuta
Carub.0001s0668 Capsella rubella
Carub.0004s1998 Capsella rubella
Carub.0008s1962 Capsella rubella
Ca_06442_v3 Cicer arietinum L.
Ca_14883_v3 Cicer arietinum L.
Ca_14884_v3 Cicer arietinum L.
Ca_14885_v3 Cicer arietinum L.
Ca_16229_v3 Cicer arietinum L.
Ca_19801_v3 Cicer arietinum L.
CBR_g8701 Chara braunii
Cc01_g13680 Coffea canephora
CDE02G4622 Ceratophyllum demersum
CDE09G0640 Ceratophyllum demersum
CDE09G1280 Ceratophyllum demersum
Cfa011628 Carpinus fangiana
Cfa014039 Carpinus fangiana
Cfa017266 Carpinus fangiana
Cfa022611 Carpinus fangiana
Ciclev10003183m.g Citrus clementina
Ciclev10011117m.g Citrus clementina
Ciclev10027865m.g Citrus clementina
CiPaw.09G204800 Carya illinoinensis
CiPaw.10G153800 Carya illinoinensis
CiPaw.13G083800 Carya illinoinensis
CiPaw.14G062700 Carya illinoinensis
ClCG02G019800 Citrullus lanatus
ClCG03G001040 Citrullus lanatus
ClCG08G009620 Citrullus lanatus
COL.COLO4_05747 Corchorus olitorius
COL.COLO4_14630 Corchorus olitorius
COL.COLO4_19081 Corchorus olitorius
COL.COLO4_21610 Corchorus olitorius
Cpa.g.sc112.87 Carica papaya
Cpa.g.sc26.226 Carica papaya
Cpa.g.sc56.101 Carica papaya
Cre05.g236500 Chlamydomonas reinhardtii
CsaV3_1G035880 Cucumis sativus L.
CsaV3_6G016520 Cucumis sativus L.
CsaV3_6G031740 Cucumis sativus L.
CSS0004281 Camellia sinensis var. sinensis
CSS0013080 Camellia sinensis var. sinensis
CSS0026349 Camellia sinensis var. sinensis
CSS0026780 Camellia sinensis var. sinensis
CSS0049568 Camellia sinensis var. sinensis
DCAR_007407 Daucus carota
DCAR_016752 Daucus carota
Dinv14482 Davidia involucrata
Dinv28594 Davidia involucrata
Dinv31916 Davidia involucrata
Dinv31917 Davidia involucrata
Duzib093G0582 Durio zibethinus
Duzib093G1410 Durio zibethinus
Duzib150G0169 Durio zibethinus
Duzib168G1993 Durio zibethinus
ECA233G0538 Erigeron canadensis
ECA233G2943 Erigeron canadensis
ECA236G0410 Erigeron canadensis
ECA246G1344 Erigeron canadensis
EL10Ac7g16100 Beta vulgaris
Eucgr.F01725 Eucalyptus grandis
Eucgr.F01729 Eucalyptus grandis
Eucgr.J01953 Eucalyptus grandis
Eucgr.K03001 Eucalyptus grandis
Eucgr.K03002 Eucalyptus grandis
FAN11G3286 Fragaria x ananassa
FAN15G0186 Fragaria x ananassa
FAN16G2946 Fragaria x ananassa
FAN20G0762 Fragaria x ananassa
FAN21G0768 Fragaria x ananassa
FAN27G0964 Fragaria x ananassa
FvH4_3g37680 Fragaria vesca
Glyma.02G304100 Glycine max
Glyma.08G335200 Glycine max
Glyma.13G076400 Glycine max
Glyma.14G009700 Glycine max
Glyma.18G068800 Glycine max
Gohir.A01G224700 Gossypium hirsutum
Gohir.A03G048000 Gossypium hirsutum
Gohir.A05G090900 Gossypium hirsutum
Gohir.A05G181100 Gossypium hirsutum
Gohir.D01G214300 Gossypium hirsutum
Gohir.D03G119000 Gossypium hirsutum
Gohir.D05G091900 Gossypium hirsutum
Gohir.D05G184100 Gossypium hirsutum
Gorai.002G260400 Gossypium raimondii
Gorai.003G125400 Gossypium raimondii
Gorai.009G094400 Gossypium raimondii
Gorai.009G189600 Gossypium raimondii
GSVIVG01008700001 Vitis vinifera
GSVIVG01024820001 Vitis vinifera
GSVIVG01034024001 Vitis vinifera
HanXRQChr01g0015891 Helianthus annuus
HanXRQChr05g0135581 Helianthus annuus
HanXRQChr13g0407121 Helianthus annuus
HanXRQChr13g0407131 Helianthus annuus
HanXRQChr14g0427531 Helianthus annuus
Haze_20935 Corylus avellana
Haze_22742 Corylus avellana
Haze_24233 Corylus avellana
Haze_26218 Corylus avellana
Hma1.2p1_0543F.1_g175260 Hydrangea macrophylla
Hma1.2p1_0763F.1_g214520 Hydrangea macrophylla
Hma1.2p1_1616F.1_g293720 Hydrangea macrophylla
Hma1.2p1_1728F.1_g299580 Hydrangea macrophylla
HPP92_005478 Vanilla planifolia
HPP92_012621 Vanilla planifolia
Hund04901 Selenicereus undatus
Hund18871 Selenicereus undatus
Lalb_Chr04g0247381 Lupinus albus
Lalb_Chr04g0247391 Lupinus albus
Lalb_Chr04g0247631 Lupinus albus
Lalb_Chr10g0107571 Lupinus albus
Lj2C1073T8 Lonicera japonica
Lj3A958G64 Lonicera japonica
Lj3A958T70 Lonicera japonica
Lj4C14T4 Lonicera japonica
Lj6g0017007 Lotus japonicus
Lj6g0021947 Lotus japonicus
LjContig00081g0025518 Lotus japonicus
Lsat_1_v5_gn_2_2361 Lactuca sativa
Lsat_1_v5_gn_3_19120 Lactuca sativa
Lsat_1_v5_gn_6_32601 Lactuca sativa
Lsat_1_v5_gn_8_122641 Lactuca sativa
Lsat_1_v5_gn_8_28221 Lactuca sativa
Lsat_1_v5_gn_8_72241 Lactuca sativa
Manes.01G165800 Manihot esculenta
Manes.02G123100 Manihot esculenta
Manes.05G140600 Manihot esculenta
Mapoly0120s0007 Marchantia polymorpha
MBI08_g26492_MAGBIO Magnolia biondii
MBI14_g32927_MAGBIO Magnolia biondii
MCO07G207 Micromonas commoda
MD03G1079000 Malus domestica
MD08G1004600 Malus domestica
MD12G1158800 Malus domestica
Medtr3g061720 Medicago truncatula
Medtr3g079190 Medicago truncatula
Medtr5g096890 Medicago truncatula
MELO3C020583.2 Cucumis melo
MELO3C025880.2 Cucumis melo
MELO3C026551.2 Cucumis melo
MELO3C030285.2 Cucumis melo
Migut.N00906 Erythranthe guttata
MSTRG.12660 Avicennia marina
MSTRG.17822 Avicennia marina
Nitab4.5_0000260g0010 Nicotiana tabacum
Nitab4.5_0000260g0020 Nicotiana tabacum
Nitab4.5_0000588g0320 Nicotiana tabacum
Nitab4.5_0000588g0360 Nicotiana tabacum
Nitab4.5_0006610g0010 Nicotiana tabacum
Nn7g37218 Nelumbo nucifera
Oeu005278.1 Olea europaea
Oeu009385.2 Olea europaea
Oeu029448.1 Olea europaea
Oeu040134.1 Olea europaea
Oeu046329.1 Olea europaea
Oeu049280.1 Olea europaea
Os01g0624000 Oryza sativa ssp. japonica
Peaxi162Scf00174g00164 Petunia axillaris
Peaxi162Scf00743g00025 Petunia axillaris
PGR004G2201 Punica granatum
PGR083G2723 Punica granatum
PGR119G2286 Punica granatum
PGSC0003DMG400004383 Solanum tuberosum
PGSC0003DMG400009967 Solanum tuberosum
Phvul.006G063100 Phaseolus vulgaris
Phvul.008G283700 Phaseolus vulgaris
Phvul.L002437 Phaseolus vulgaris
Potri.001G247400 Populus trichocarpa
Potri.002G013300 Populus trichocarpa
Potri.009G040600 Populus trichocarpa
Potri.016G110000 Populus trichocarpa
Pp3c18_13580 Physcomitrium patens
Pp3c4_11160 Physcomitrium patens
Prupe.1G356500 Prunus persica
Prupe.6G063600 Prunus persica
Prupe.6G269200 Prunus persica
Psat0s2310g0160 Pisum sativum
Psat2g005320 Pisum sativum
Psat2g079400 Pisum sativum
Psat2g167680 Pisum sativum
Psat5g112800 Pisum sativum
Psat5g148080 Pisum sativum
Psat5g162920 Pisum sativum
PSO384G2655 Papaver somniferum
PSO585G0016 Papaver somniferum
QL01p028990 Quercus lobata
QL02p013704 Quercus lobata
QL07p036254 Quercus lobata
RcHm_v2.0_Chr5g0067951 Rosa chinensis
RcHm_v2.0_Chr6g0304021 Rosa chinensis
Rhsim05G0203700 Rhododendron simsii
Rhsim13G0074500 Rhododendron simsii
Sabra09G0028500 Salix brachista
Sabra16G0106500 Salix brachista
Sabra16G0150300 Salix brachista
SalBow2G3128 Salvia bowleyana
SalBow3G0373 Salvia bowleyana
SalBow3G1604 Salvia bowleyana
Sc21g0006140 Simmondsia chinensis
Sed0005864 Sechium edule
Sed0007866 Sechium edule
Sed0016878 Sechium edule
SEGI_02209 Sequoiadendron giganteum
SEGI_03460 Sequoiadendron giganteum
SEGI_09054 Sequoiadendron giganteum
SEGI_09607 Sequoiadendron giganteum
SEGI_21419 Sequoiadendron giganteum
SEGI_27925 Sequoiadendron giganteum
SEGI_32786 Sequoiadendron giganteum
SEGI_36443 Sequoiadendron giganteum
SEGI_41351 Sequoiadendron giganteum
SGA_v2.0_scaffold104G30148 Striga asiatica
SGA_v2.0_scaffold199G41160 Striga asiatica
SHI46905 Sapria himalayana
SMO348G0056 Selaginella moellendorffii
SMO353G0200 Selaginella moellendorffii
Solyc03g006140.3 Solanum lycopersicum
Solyc04g082190.1 Solanum lycopersicum
Sopen03g002150 Solanum pennellii
Sopen04g035820 Solanum pennellii
Sp1g06130 Schrenkiella parvula
Sp4g20330 Schrenkiella parvula
Sp6g20680 Schrenkiella parvula
TAR369G0830 Trochodendron aralioides
TAR376G0311 Trochodendron aralioides
TAR623G1531 Trochodendron aralioides
TAR636G2921 Trochodendron aralioides
THA.LOC104805725 Tarenaya hassleriana
THA.LOC104814899 Tarenaya hassleriana
Thecc.05G023800 Theobroma cacao
Thecc.08G055400 Theobroma cacao
Thecc.09G308300 Theobroma cacao
Thhalv10006859m.g Eutrema salsugineum
Thhalv10016292m.g Eutrema salsugineum
TPR.G1237 Trifolium pratense
TPR.G14382 Trifolium pratense
TPR.G30126 Trifolium pratense
TWI53G0807 Tripterygium wilfordii
TWI56G1341 Tripterygium wilfordii
TWI75G0565 Tripterygium wilfordii
TWI79G0276 Tripterygium wilfordii
unitig_736.g22896 Utricularia gibba
unitig_736.g22897 Utricularia gibba
vmacro03004 Vaccinium macrocarpon
vmacro20227 Vaccinium macrocarpon
VMungo0540G0902 Vigna mungo
VMungo0540G1000 Vigna mungo
VMungo0540G1667 Vigna mungo
VMungo0540G2210 Vigna mungo
VMungo0540G2247 Vigna mungo
VMungo0540G2273 Vigna mungo
VMungo0647G2329 Vigna mungo
Zm00001eb156160 Zea mays
Zm00001eb159440 Zea mays
Zm00001eb265720 Zea mays
Zm00001eb278250 Zea mays

User provided reference genes

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