Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p31620 Brassica napus
A05p40200 Brassica napus
A09p50140 Brassica napus
Aa31LG10G12110 Aethionema arabicum
Aa31LG1G23470 Aethionema arabicum
Aa31LG5G18630 Aethionema arabicum
Actinidia06275 Actinidia chinensis
Actinidia17678 Actinidia chinensis
Actinidia19438 Actinidia chinensis
Actinidia38143 Actinidia chinensis
Ah.04g151310 Amaranthus hybridus
Ah.04g151320 Amaranthus hybridus
Ah.04g151330 Amaranthus hybridus
Ah.04g151340 Amaranthus hybridus
Ah.10g026750 Amaranthus hybridus
Ah.10g030930 Amaranthus hybridus
AL3G19510 Arabidopsis lyrata
AL4G39530 Arabidopsis lyrata
AL4G39930 Arabidopsis lyrata
AL5G38690 Arabidopsis lyrata
Aqoxy2G00264 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2209RH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4XN20A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5WUG4L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.64N0VZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7Q1XW7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.933S2N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.93VXD5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CIZ87P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FDT2KN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FKCZ12 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G8XSAV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H805I4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HEL08G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IF4HA9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J7QRMP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LRH7VZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PRAL1M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VZ1HH8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZWX2MJ Arachis hypogaea
AT2G41451 Arabidopsis thaliana
AT3G08550 Arabidopsis thaliana
AT3G57200 Arabidopsis thaliana
ATR0057G025 Amborella trichopoda
Atru.chr1.1240 Acer truncatum
Atru.chr1.1241 Acer truncatum
Atru.chr11.2506 Acer truncatum
Atru.chr11.2534 Acer truncatum
AUR62024531 Chenopodium quinoa
AUR62026131 Chenopodium quinoa
AUR62026810 Chenopodium quinoa
AUR62030398 Chenopodium quinoa
AUR62030400 Chenopodium quinoa
AUR62037243 Chenopodium quinoa
BcaB04g21251 Brassica carinata
BcaC02g10019 Brassica carinata
BcaC05g29596 Brassica carinata
BcaC07g40065 Brassica carinata
BcaC09g47978 Brassica carinata
BcaNung06570 Brassica carinata
BolC1t05500H Brassica oleracea
BolC3t21456H Brassica oleracea
BolC4t24957H Brassica oleracea
BolC4t28402H Brassica oleracea
BolC5t30107H Brassica oleracea
BolC5t34569H Brassica oleracea
BolC8t50866H Brassica oleracea
BraA01t04341Z Brassica rapa
BraA04t18620Z Brassica rapa
BraA09t40466Z Brassica rapa
C04p69050 Brassica napus
C05p13690 Brassica napus
C05p59280 Brassica napus
C08p32510 Brassica napus
CAN.G410.37 Capsicum annuum
CAN.G641.33 Capsicum annuum
CANSAT80G0142 Cannabis sativa
CANSAT80G1077 Cannabis sativa
CARHR082850 Cardamine hirsuta
CARHR136570 Cardamine hirsuta
Carub.0003s0768 Capsella rubella
Carub.0004s2375 Capsella rubella
Carub.0005s2402 Capsella rubella
Ca_08426_v3 Cicer arietinum L.
Ca_22952_v3 Cicer arietinum L.
Ca_23756_v3 Cicer arietinum L.
Ca_27017_v3 Cicer arietinum L.
Ca_28211_v3 Cicer arietinum L.
Ca_30823_v3 Cicer arietinum L.
CBR_g30521 Chara braunii
Cc06_g18380 Coffea canephora
Cc09_g07770 Coffea canephora
CDE08G0996 Ceratophyllum demersum
CDE09G0343 Ceratophyllum demersum
Cfa010841 Carpinus fangiana
Cfa016752 Carpinus fangiana
Ciclev10003274m.g Citrus clementina
Ciclev10004681m.g Citrus clementina
Ciclev10006296m.g Citrus clementina
Ciclev10006786m.g Citrus clementina
Ciclev10023939m.g Citrus clementina
Ciclev10030250m.g Citrus clementina
Ciclev10031159m.g Citrus clementina
CiPaw.09G042400 Carya illinoinensis
CiPaw.10G036700 Carya illinoinensis
CiPaw.13G009800 Carya illinoinensis
CiPaw.14G005300 Carya illinoinensis
ClCG02G013930 Citrullus lanatus
ClCG10G015560 Citrullus lanatus
COL.COLO4_21296 Corchorus olitorius
COL.COLO4_25845 Corchorus olitorius
COL.COLO4_25846 Corchorus olitorius
Cpa.g.sc120.11 Carica papaya
Cpa.g.sc197.16 Carica papaya
Cre04.g218450 Chlamydomonas reinhardtii
CsaV3_3G040870 Cucumis sativus L.
CsaV3_5G006220 Cucumis sativus L.
CSS0030968 Camellia sinensis var. sinensis
DCAR_020538 Daucus carota
DCAR_031821 Daucus carota
Dinv03573 Davidia involucrata
Dinv18687 Davidia involucrata
Dinv18688 Davidia involucrata
Dinv30295 Davidia involucrata
Duzib106G0022 Durio zibethinus
Duzib114G0237 Durio zibethinus
ECA247G1452 Erigeron canadensis
ECA248G1811 Erigeron canadensis
EL10Ac2g02874 Beta vulgaris
EL10Ac3g07160 Beta vulgaris
EL10Ac3g07161 Beta vulgaris
EL10Ac3g07162 Beta vulgaris
EL10Ac3g07164 Beta vulgaris
Eucgr.A02295 Eucalyptus grandis
Eucgr.G03264 Eucalyptus grandis
Eucgr.L03186 Eucalyptus grandis
FAN01G1457 Fragaria x ananassa
FAN03G0213 Fragaria x ananassa
FAN05G1974 Fragaria x ananassa
FAN06G2265 Fragaria x ananassa
FAN10G1593 Fragaria x ananassa
FAN14G5479 Fragaria x ananassa
FvH4_6g24880 Fragaria vesca
FvH4_7g02090 Fragaria vesca
Glyma.03G132300 Glycine max
Glyma.04G141900 Glycine max
Glyma.11G149700 Glycine max
Glyma.19G134401 Glycine max
Glyma.19G134500 Glycine max
Gohir.A01G193750 Gossypium hirsutum
Gohir.A04G148200 Gossypium hirsutum
Gohir.A05G334350 Gossypium hirsutum
Gohir.A11G309300 Gossypium hirsutum
Gohir.A13G012700 Gossypium hirsutum
Gohir.A13G208000 Gossypium hirsutum
Gohir.D01G184000 Gossypium hirsutum
Gohir.D04G071700 Gossypium hirsutum
Gohir.D11G324700 Gossypium hirsutum
Gohir.D13G013900 Gossypium hirsutum
Gohir.D13G013901 Gossypium hirsutum
Gorai.002G227500 Gossypium raimondii
Gorai.007G355500 Gossypium raimondii
Gorai.012G080800 Gossypium raimondii
Gorai.013G014900 Gossypium raimondii
GSVIVG01000861001 Vitis vinifera
HanXRQChr01g0020851 Helianthus annuus
HanXRQChr08g0236811 Helianthus annuus
HanXRQChr10g0298651 Helianthus annuus
HanXRQChr13g0396081 Helianthus annuus
Haze_03107 Corylus avellana
Haze_19752 Corylus avellana
Hma1.2p1_0056F.1_g031585 Hydrangea macrophylla
Hma1.2p1_0056F.1_g031600 Hydrangea macrophylla
HPP92_008134 Vanilla planifolia
HPP92_008186 Vanilla planifolia
HPP92_008187 Vanilla planifolia
HPP92_023822 Vanilla planifolia
HPP92_023823 Vanilla planifolia
HPP92_023898 Vanilla planifolia
Hund13324 Selenicereus undatus
Hund13325 Selenicereus undatus
Hund15705 Selenicereus undatus
Hund24654 Selenicereus undatus
Hund24655 Selenicereus undatus
Hund28288 Selenicereus undatus
Hund28289 Selenicereus undatus
Lalb_Chr01g0017201 Lupinus albus
Lalb_Chr25g0282741 Lupinus albus
Lalb_Chr25g0287061 Lupinus albus
Lj1A1122G43 Lonicera japonica
Lj1g0001796 Lotus japonicus
Lj2A390T40 Lonicera japonica
Lj3g0013780 Lotus japonicus
Lj7C578G16 Lonicera japonica
Lsat_1_v5_gn_1_100380 Lactuca sativa
Lsat_1_v5_gn_5_160741 Lactuca sativa
Lsat_1_v5_gn_9_31980 Lactuca sativa
Manes.04G163600 Manihot esculenta
Manes.08G053500 Manihot esculenta
Manes.09G016100 Manihot esculenta
Manes.11G002200 Manihot esculenta
Mapoly0079s0068 Marchantia polymorpha
Mapoly0154s0003 Marchantia polymorpha
MBI13_g04785_MAGBIO Magnolia biondii
MCO01G643 Micromonas commoda
MD02G1296800 Malus domestica
MD07G1027100 Malus domestica
MD12G1085800 Malus domestica
MD14G1080900 Malus domestica
Medtr3g023150 Medicago truncatula
Medtr7g090740 Medicago truncatula
MELO3C009822.2 Cucumis melo
MELO3C011732.2 Cucumis melo
Migut.B01197 Erythranthe guttata
MSTRG.20543 Avicennia marina
Nitab4.5_0000082g0360 Nicotiana tabacum
Nitab4.5_0000316g0230 Nicotiana tabacum
Nitab4.5_0001249g0050 Nicotiana tabacum
Nitab4.5_0001543g0010 Nicotiana tabacum
Nn1g07876 Nelumbo nucifera
Nn3g19988 Nelumbo nucifera
Oeu009630.1 Olea europaea
Oeu014603.1 Olea europaea
Oeu027348.1 Olea europaea
Os01g0232800 Oryza sativa ssp. japonica
Peaxi162Scf00002g03611 Petunia axillaris
Peaxi162Scf00057g00208 Petunia axillaris
Peaxi162Scf00057g00209 Petunia axillaris
Peaxi162Scf00071g00940 Petunia axillaris
Peaxi162Scf00071g00941 Petunia axillaris
Peaxi162Scf00087g00130 Petunia axillaris
Peaxi162Scf00481g00611 Petunia axillaris
PGR004G1746 Punica granatum
PGR031G1636 Punica granatum
PGSC0003DMG400006752 Solanum tuberosum
PGSC0003DMG400008174 Solanum tuberosum
PGSC0003DMG400009758 Solanum tuberosum
PGSC0003DMG400015739 Solanum tuberosum
PGSC0003DMG400025694 Solanum tuberosum
PGSC0003DMG400030224 Solanum tuberosum
Phvul.001G128300 Phaseolus vulgaris
Phvul.005G033300 Phaseolus vulgaris
Potri.001G022700 Populus trichocarpa
Potri.003G202900 Populus trichocarpa
Potri.006G045500 Populus trichocarpa
Potri.016G041900 Populus trichocarpa
Pp3c13_16560 Physcomitrium patens
Pp3c4_7880 Physcomitrium patens
Prupe.2G027600 Prunus persica
Prupe.7G049900 Prunus persica
Psat3g013240 Pisum sativum
Psat3g075240 Pisum sativum
Psat3g075280 Pisum sativum
Psat5g213360 Pisum sativum
PSO339G5901 Papaver somniferum
PSO339G6593 Papaver somniferum
PSO384G3800 Papaver somniferum
PSO384G4788 Papaver somniferum
QL02p054780 Quercus lobata
QL02p055842 Quercus lobata
QL04p013160 Quercus lobata
QL07p005014 Quercus lobata
RcHm_v2.0_Chr1g0316351 Rosa chinensis
RcHm_v2.0_Chr1g0319411 Rosa chinensis
RcHm_v2.0_Chr1g0325671 Rosa chinensis
RcHm_v2.0_Chr2g0129781 Rosa chinensis
RcHm_v2.0_Chr3g0484541 Rosa chinensis
RcHm_v2.0_Chr5g0068801 Rosa chinensis
RcHm_v2.0_Chr6g0245671 Rosa chinensis
RcHm_v2.0_Chr7g0241271 Rosa chinensis
Rhsim01G0010900 Rhododendron simsii
Rhsim01G0123200 Rhododendron simsii
Rhsim04G0108000 Rhododendron simsii
Sabra01G0017000 Salix brachista
Sabra06G0031200 Salix brachista
Sabra16G0047600 Salix brachista
SalBow5G4462 Salvia bowleyana
Sc10g0004190 Simmondsia chinensis
Sc11g0006770 Simmondsia chinensis
Sc14g0009270 Simmondsia chinensis
Sc19g0008390 Simmondsia chinensis
Sed0010394 Sechium edule
Sed0011530 Sechium edule
Sed0019396 Sechium edule
SEGI_14102 Sequoiadendron giganteum
SEGI_17166 Sequoiadendron giganteum
SEGI_25264 Sequoiadendron giganteum
SEGI_41320 Sequoiadendron giganteum
SGA_v2.0_scaffold105G30358 Striga asiatica
SGA_v2.0_scaffold119G32789 Striga asiatica
SGA_v2.0_scaffold4G02440 Striga asiatica
SHI24585 Sapria himalayana
SMO116G0268 Selaginella moellendorffii
Solyc01g068200.4 Solanum lycopersicum
Solyc06g024310.1 Solanum lycopersicum
Solyc10g079210.2 Solanum lycopersicum
Sopen01g030140 Solanum pennellii
Sopen10g029860 Solanum pennellii
Sp3g07020 Schrenkiella parvula
Sp4g23720 Schrenkiella parvula
Sp5g05370 Schrenkiella parvula
TAR065G0003 Trochodendron aralioides
TAR369G1070 Trochodendron aralioides
TAR383G0681 Trochodendron aralioides
TAR633G1029 Trochodendron aralioides
TAR636G1876 Trochodendron aralioides
THA.LOC104803289 Tarenaya hassleriana
THA.LOC104825594 Tarenaya hassleriana
THA.LOC104826710 Tarenaya hassleriana
Thecc.05G145100 Theobroma cacao
Thecc.10G004700 Theobroma cacao
Thecc.10G005100 Theobroma cacao
Thecc.K0006500 Theobroma cacao
Thhalv10006445m.g Eutrema salsugineum
Thhalv10007378m.g Eutrema salsugineum
Thhalv10017666m.g Eutrema salsugineum
Thhalv10020488m.g Eutrema salsugineum
TPR.G2748 Trifolium pratense
TPR.G32751 Trifolium pratense
TWI38G0983 Tripterygium wilfordii
TWI53G1821 Tripterygium wilfordii
TWI74G1311 Tripterygium wilfordii
unitig_0.g1388 Utricularia gibba
unitig_750.g28443 Utricularia gibba
vmacro09043 Vaccinium macrocarpon
vmacro12685 Vaccinium macrocarpon
VMungo1080G0446 Vigna mungo
VMungo1383G2209 Vigna mungo
Zm00001eb025500 Zea mays
Zm00001eb119140 Zea mays
Zm00001eb245210 Zea mays

User provided reference genes

Program Settings