Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p34560 Brassica napus
A06p42040 Brassica napus
A08p24060 Brassica napus
A08p32510 Brassica napus
A09p63480 Brassica napus
Aa31LG1G1780 Aethionema arabicum
Aa31LG2G6130 Aethionema arabicum
Aa31LG6G16470 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3963 Anthoceros agrestis
Actinidia00599 Actinidia chinensis
Actinidia01357 Actinidia chinensis
Actinidia01358 Actinidia chinensis
Actinidia08128 Actinidia chinensis
Actinidia20489 Actinidia chinensis
Actinidia26739 Actinidia chinensis
Ah.01g022660 Amaranthus hybridus
Ah.03g133340 Amaranthus hybridus
AL1G24670 Arabidopsis lyrata
AL5G15170 Arabidopsis lyrata
AL7G10600 Arabidopsis lyrata
Aqoxy5G03723 Aquilegia oxysepala
Aqoxy5G03724 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2WLS1Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CXE5JY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FAC3HW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H3HBDV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R6BV62 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YC9QB8 Arachis hypogaea
AT1G13020 Arabidopsis thaliana
AT3G26400 Arabidopsis thaliana
AT4G38710 Arabidopsis thaliana
ATR0081G059 Amborella trichopoda
ATR0081G062 Amborella trichopoda
ATR0810G264 Amborella trichopoda
Atru.chr11.2159 Acer truncatum
AUR62005498 Chenopodium quinoa
AUR62010082 Chenopodium quinoa
AUR62024243 Chenopodium quinoa
BcaB03g12220 Brassica carinata
BcaB04g17954 Brassica carinata
BcaB08g34234 Brassica carinata
BcaC01g00250 Brassica carinata
BcaC03g17338 Brassica carinata
BcaC03g17339 Brassica carinata
BcaC03g17365 Brassica carinata
BcaNung06887 Brassica carinata
BolC2t11380H Brassica oleracea
BolC3t19979H Brassica oleracea
BolC7t44068H Brassica oleracea
BolC8t49204H Brassica oleracea
BolC8t52231H Brassica oleracea
BraA06t27121Z Brassica rapa
BraA08t34362Z Brassica rapa
BraA08t35175Z Brassica rapa
BraA09t41698Z Brassica rapa
C02p53040 Brassica napus
C02p53060 Brassica napus
C03p77250 Brassica napus
C07p35440 Brassica napus
C08p15780 Brassica napus
C08p46930 Brassica napus
CAN.G272.2 Capsicum annuum
CANSAT01G2806 Cannabis sativa
CANSAT25G2203 Cannabis sativa
CANSAT35G0514 Cannabis sativa
CARHR013350 Cardamine hirsuta
CARHR147420 Cardamine hirsuta
CARHR294420 Cardamine hirsuta
Carub.0001s1277 Capsella rubella
Carub.0005s0437 Capsella rubella
Carub.0007s0058 Capsella rubella
Ca_03054_v3 Cicer arietinum L.
Ca_17780_v3 Cicer arietinum L.
CBR_g935 Chara braunii
Cc02_g16460 Coffea canephora
Cc11_g15900 Coffea canephora
CDE02G2889 Ceratophyllum demersum
CDE05G1487 Ceratophyllum demersum
CDE05G1573 Ceratophyllum demersum
Cfa005190 Carpinus fangiana
Cfa009231 Carpinus fangiana
Ciclev10028634m.g Citrus clementina
Ciclev10031235m.g Citrus clementina
CiPaw.05G077800 Carya illinoinensis
CiPaw.05G179600 Carya illinoinensis
CiPaw.06G066600 Carya illinoinensis
CiPaw.06G124800 Carya illinoinensis
ClCG02G004270 Citrullus lanatus
ClCG02G011610 Citrullus lanatus
ClCG08G017650 Citrullus lanatus
COL.COLO4_17265 Corchorus olitorius
COL.COLO4_23473 Corchorus olitorius
Cpa.g.sc33.43 Carica papaya
Cpa.g.sc37.183 Carica papaya
Cre16.g688050 Chlamydomonas reinhardtii
CsaV3_2G015760 Cucumis sativus L.
CsaV3_2G024990 Cucumis sativus L.
CsaV3_7G000840 Cucumis sativus L.
CSS0015590 Camellia sinensis var. sinensis
CSS0025753 Camellia sinensis var. sinensis
CSS0027226 Camellia sinensis var. sinensis
CSS0034651 Camellia sinensis var. sinensis
CSS0034955 Camellia sinensis var. sinensis
CSS0044440 Camellia sinensis var. sinensis
DCAR_012115 Daucus carota
DCAR_022778 Daucus carota
DCAR_022779 Daucus carota
DCAR_024421 Daucus carota
DCAR_026504 Daucus carota
Dinv14734 Davidia involucrata
Dinv15212 Davidia involucrata
Dinv27243 Davidia involucrata
Dinv41971 Davidia involucrata
Duzib052G0141 Durio zibethinus
Duzib248G0408 Durio zibethinus
Duzib248G0809 Durio zibethinus
Duzib251G0379 Durio zibethinus
Duzib268G1304 Durio zibethinus
ECA234G1535 Erigeron canadensis
EL10Ac6g13868 Beta vulgaris
EL10Ac6g14916 Beta vulgaris
EL10Ac9g21429 Beta vulgaris
Eucgr.B03270 Eucalyptus grandis
Eucgr.I01379 Eucalyptus grandis
FAN07G0001 Fragaria x ananassa
FAN07G0745 Fragaria x ananassa
FAN12G1365 Fragaria x ananassa
FAN12G2989 Fragaria x ananassa
FAN12G4314 Fragaria x ananassa
FAN15G2134 Fragaria x ananassa
FAN17G1615 Fragaria x ananassa
FAN20G2078 Fragaria x ananassa
FAN22G0770 Fragaria x ananassa
FAN24G0537 Fragaria x ananassa
FAN27G1115 Fragaria x ananassa
FvH4_2g01750 Fragaria vesca
FvH4_4g15601 Fragaria vesca
FvH4_4g26000 Fragaria vesca
Glyma.05G174400 Glycine max
Glyma.08G131600 Glycine max
Glyma.11G105400 Glycine max
Glyma.12G030200 Glycine max
Glyma.20G087400 Glycine max
Gohir.A01G163000 Gossypium hirsutum
Gohir.A03G133200 Gossypium hirsutum
Gohir.A03G203500 Gossypium hirsutum
Gohir.A04G122600 Gossypium hirsutum
Gohir.A12G038700 Gossypium hirsutum
Gohir.D01G151800 Gossypium hirsutum
Gohir.D02G157500 Gossypium hirsutum
Gohir.D02G224800 Gossypium hirsutum
Gohir.D04G164600 Gossypium hirsutum
Gohir.D12G033600 Gossypium hirsutum
Gorai.002G188100 Gossypium raimondii
Gorai.005G176700 Gossypium raimondii
Gorai.005G252600 Gossypium raimondii
Gorai.008G034500 Gossypium raimondii
Gorai.012G153000 Gossypium raimondii
GSVIVG01000549001 Vitis vinifera
GSVIVG01024072001 Vitis vinifera
HanXRQChr10g0298951 Helianthus annuus
HanXRQChr12g0371941 Helianthus annuus
Haze_02190 Corylus avellana
Haze_12267 Corylus avellana
Hma1.2p1_0079F.1_g041070 Hydrangea macrophylla
Hma1.2p1_0815F.1_g222670 Hydrangea macrophylla
Hma1.2p1_3236F.1_g334280 Hydrangea macrophylla
HPP92_006183 Vanilla planifolia
HPP92_022645 Vanilla planifolia
HPP92_024687 Vanilla planifolia
HPP92_026027 Vanilla planifolia
HPP92_027732 Vanilla planifolia
Hund06409 Selenicereus undatus
Hund25397 Selenicereus undatus
Lalb_Chr01g0001671 Lupinus albus
Lalb_Chr03g0025001 Lupinus albus
Lalb_Chr07g0185411 Lupinus albus
Lalb_Chr12g0204031 Lupinus albus
Lalb_Chr13g0295851 Lupinus albus
Lj3A1060G69 Lonicera japonica
Lj3g0017262 Lotus japonicus
Lj4g0004810 Lotus japonicus
Lj5P183T88 Lonicera japonica
Lj6C814T13 Lonicera japonica
Lj9P390T58 Lonicera japonica
Lsat_1_v5_gn_2_17241 Lactuca sativa
Lsat_1_v5_gn_4_3980 Lactuca sativa
Lsat_1_v5_gn_4_74740 Lactuca sativa
Lsat_1_v5_gn_8_152681 Lactuca sativa
Lsat_1_v5_gn_9_25380 Lactuca sativa
Manes.11G090500 Manihot esculenta
Manes.12G021400 Manihot esculenta
Manes.13G022300 Manihot esculenta
Mapoly0057s0064 Marchantia polymorpha
MBI09_g29903_MAGBIO Magnolia biondii
MBI10_g31499_MAGBIO Magnolia biondii
MCO05G149 Micromonas commoda
MD05G1116800 Malus domestica
MD10G1119900 Malus domestica
MD13G1098600 Malus domestica
MD16G1099600 Malus domestica
Medtr4g074040 Medicago truncatula
Medtr8g089785 Medicago truncatula
MELO3C010696.2 Cucumis melo
MELO3C013373.2 Cucumis melo
MELO3C020790.2 Cucumis melo
Migut.B00116 Erythranthe guttata
Migut.E00212 Erythranthe guttata
Migut.K00613 Erythranthe guttata
MSTRG.16883 Avicennia marina
MSTRG.20015 Avicennia marina
MSTRG.558 Avicennia marina
MSTRG.7948 Avicennia marina
Nitab4.5_0000229g0070 Nicotiana tabacum
Nitab4.5_0000283g0030 Nicotiana tabacum
Nitab4.5_0000980g0040 Nicotiana tabacum
Nitab4.5_0002653g0010 Nicotiana tabacum
Nn3g16681 Nelumbo nucifera
Nn4g22575 Nelumbo nucifera
Nn5g29104 Nelumbo nucifera
Nn6g35004 Nelumbo nucifera
Oeu027569.1 Olea europaea
Oeu042186.2 Olea europaea
Oeu050537.1 Olea europaea
Oeu055650.2 Olea europaea
Oeu059773.2 Olea europaea
Oeu060420.1 Olea europaea
Os02g0439700 Oryza sativa ssp. japonica
Os02g0595800 Oryza sativa ssp. japonica
Os04g0480100 Oryza sativa ssp. japonica
Peaxi162Scf00074g01126 Petunia axillaris
Peaxi162Scf00128g00454 Petunia axillaris
Peaxi162Scf00362g00949 Petunia axillaris
PGR102G1816 Punica granatum
PGR119G1839 Punica granatum
PGR142G0784 Punica granatum
PGSC0003DMG400001628 Solanum tuberosum
PGSC0003DMG400014999 Solanum tuberosum
PGSC0003DMG400018596 Solanum tuberosum
PGSC0003DMG400041027 Solanum tuberosum
Phvul.002G259400 Phaseolus vulgaris
Phvul.011G033300 Phaseolus vulgaris
Potri.004G169100 Populus trichocarpa
Potri.008G185400 Populus trichocarpa
Potri.009G130200 Populus trichocarpa
Potri.010G048200 Populus trichocarpa
Pp3c3_35640 Physcomitrium patens
Pp3c3_35650 Physcomitrium patens
Prupe.1G246800 Prunus persica
Prupe.8G161300 Prunus persica
Psat7g059440 Pisum sativum
Psat7g174440 Pisum sativum
PSO063G3998 Papaver somniferum
PSO384G5105 Papaver somniferum
PSO541G0135 Papaver somniferum
PSO675G7637 Papaver somniferum
PSO754G0066 Papaver somniferum
QL03p057223 Quercus lobata
QL11p047710 Quercus lobata
RcHm_v2.0_Chr4g0433421 Rosa chinensis
RcHm_v2.0_Chr6g0244781 Rosa chinensis
Rhsim11G0188300 Rhododendron simsii
Rhsim12G0039700 Rhododendron simsii
Rhsim12G0108800 Rhododendron simsii
Sabra04G0113400 Salix brachista
Sabra08G0140400 Salix brachista
Sabra09G0099600 Salix brachista
Sabra09G0100900 Salix brachista
Sabra10G0020600 Salix brachista
SalBow3G1371 Salvia bowleyana
SalBow6G0737 Salvia bowleyana
SalBow8G0331 Salvia bowleyana
Sc04g0009620 Simmondsia chinensis
Sc08g0003150 Simmondsia chinensis
Sed0007163 Sechium edule
Sed0008982 Sechium edule
Sed0010328 Sechium edule
Sed0018167 Sechium edule
Sed0026833 Sechium edule
SEGI_03036 Sequoiadendron giganteum
SEGI_18333 Sequoiadendron giganteum
SEGI_18854 Sequoiadendron giganteum
SEGI_31383 Sequoiadendron giganteum
SGA_v2.0_scaffold109G31052 Striga asiatica
SGA_v2.0_scaffold109G31057 Striga asiatica
SGA_v2.0_scaffold63G21739 Striga asiatica
SGA_v2.0_scaffold79G25540 Striga asiatica
SGA_v2.0_scaffold87G27064 Striga asiatica
SMO230G0025 Selaginella moellendorffii
SMO239G0014 Selaginella moellendorffii
Solyc01g111200.3 Solanum lycopersicum
Solyc05g013700.4 Solanum lycopersicum
Sopen01g053250 Solanum pennellii
Sopen05g008610 Solanum pennellii
Sp1g11570 Schrenkiella parvula
Sp2g15550 Schrenkiella parvula
Sp7g37080 Schrenkiella parvula
TAR371G0096 Trochodendron aralioides
TAR376G0062 Trochodendron aralioides
TAR622G0091 Trochodendron aralioides
TAR628G0391 Trochodendron aralioides
TAR629G2755 Trochodendron aralioides
THA.LOC104804098 Tarenaya hassleriana
THA.LOC104805280 Tarenaya hassleriana
THA.LOC104824007 Tarenaya hassleriana
THA.LOC104825667 Tarenaya hassleriana
Thecc.02G066300 Theobroma cacao
Thecc.02G262800 Theobroma cacao
Thhalv10003946m.g Eutrema salsugineum
Thhalv10007279m.g Eutrema salsugineum
Thhalv10025358m.g Eutrema salsugineum
TPR.G19905 Trifolium pratense
TPR.G6216 Trifolium pratense
TWI18G0479 Tripterygium wilfordii
TWI36G0509 Tripterygium wilfordii
TWI75G0461 Tripterygium wilfordii
TWI75G1322 Tripterygium wilfordii
TWI79G0271 Tripterygium wilfordii
unitig_0.g828 Utricularia gibba
unitig_21.g20015 Utricularia gibba
unitig_52.g17179 Utricularia gibba
unitig_578.g16748 Utricularia gibba
vmacro01119 Vaccinium macrocarpon
vmacro01120 Vaccinium macrocarpon
vmacro02254 Vaccinium macrocarpon
vmacro16182 Vaccinium macrocarpon
VMungo0251G2038 Vigna mungo
VMungo0464G0597 Vigna mungo
VMungo1127G1801 Vigna mungo
Zm00001eb079540 Zea mays
Zm00001eb246120 Zea mays
Zm00001eb424960 Zea mays

User provided reference genes

Program Settings