Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p17100 Brassica napus
A02p31900 Brassica napus
A06p44490 Brassica napus
A07p33440 Brassica napus
A07p37420 Brassica napus
A09p23330 Brassica napus
Aa31LG2G3130 Aethionema arabicum
Aa31LG2G8570 Aethionema arabicum
Aa31LG4G10040 Aethionema arabicum
Aa31LG9G17320 Aethionema arabicum
Actinidia13024 Actinidia chinensis
Actinidia14962 Actinidia chinensis
Actinidia15924 Actinidia chinensis
Actinidia31977 Actinidia chinensis
Actinidia36362 Actinidia chinensis
Actinidia36675 Actinidia chinensis
Ah.02g127770 Amaranthus hybridus
Ah.10g037970 Amaranthus hybridus
Ah.16g101340 Amaranthus hybridus
AL2G24300 Arabidopsis lyrata
AL2G30580 Arabidopsis lyrata
AL5G10300 Arabidopsis lyrata
AL7G46740 Arabidopsis lyrata
arahy.Tifrunner.gnm1.ann1.3RP3M7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6KNU8H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.87PYFW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FJSG30 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KDN3A4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L0X9RT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QI6NWI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VRPR0Q Arachis hypogaea
AT1G66480 Arabidopsis thaliana
AT1G71015 Arabidopsis thaliana
AT2G01340 Arabidopsis thaliana
AT5G37840 Arabidopsis thaliana
ATR0665G617 Amborella trichopoda
Atru.chr11.436 Acer truncatum
AUR62014204 Chenopodium quinoa
AUR62023193 Chenopodium quinoa
AUR62023241 Chenopodium quinoa
AUR62041232 Chenopodium quinoa
BcaB03g14863 Brassica carinata
BcaB03g15266 Brassica carinata
BcaB05g24637 Brassica carinata
BcaB05g24638 Brassica carinata
BcaB06g27148 Brassica carinata
BcaB07g30405 Brassica carinata
BcaB07g30748 Brassica carinata
BcaC02g09617 Brassica carinata
BcaC03g15263 Brassica carinata
BcaC03g17028 Brassica carinata
BcaC03g17030 Brassica carinata
BcaC04g21592 Brassica carinata
BcaC06g31316 Brassica carinata
BcaC06g34196 Brassica carinata
BcaC08g46051 Brassica carinata
BolC2t08898H Brassica oleracea
BolC2t11025H Brassica oleracea
BolC4t26052H Brassica oleracea
BolC6t39071H Brassica oleracea
BolC6t39570H Brassica oleracea
BolC7t43714H Brassica oleracea
BolC9t55871H Brassica oleracea
BraA02t06755Z Brassica rapa
BraA02t08200Z Brassica rapa
BraA04t16768Z Brassica rapa
BraA06t27322Z Brassica rapa
BraA07t30970Z Brassica rapa
BraA09t37933Z Brassica rapa
C02p28560 Brassica napus
C02p49390 Brassica napus
C04p44780 Brassica napus
C06p39830 Brassica napus
C06p45130 Brassica napus
C07p31740 Brassica napus
C09p30080 Brassica napus
CANSAT01G3083 Cannabis sativa
CANSAT11G1980 Cannabis sativa
CARHR058500 Cardamine hirsuta
CARHR064300 Cardamine hirsuta
CARHR143860 Cardamine hirsuta
Carub.0002s1251 Capsella rubella
Carub.0002s1782 Capsella rubella
Carub.0005s0032 Capsella rubella
Carub.0007s3302 Capsella rubella
Ca_05864_v3 Cicer arietinum L.
Ca_08166_v3 Cicer arietinum L.
Ca_12606_v3 Cicer arietinum L.
Ca_25712_v3 Cicer arietinum L.
Cc07_g08190 Coffea canephora
Cc11_g08800 Coffea canephora
CDE05G1187 Ceratophyllum demersum
CDE05G2483 Ceratophyllum demersum
Cfa007844 Carpinus fangiana
Cfa008600 Carpinus fangiana
Ciclev10012690m.g Citrus clementina
Ciclev10016683m.g Citrus clementina
CiPaw.03G068400 Carya illinoinensis
CiPaw.04G046100 Carya illinoinensis
CiPaw.05G248900 Carya illinoinensis
CiPaw.06G012300 Carya illinoinensis
ClCG03G008730 Citrullus lanatus
ClCG05G010920 Citrullus lanatus
ClCG07G006320 Citrullus lanatus
COL.COLO4_15719 Corchorus olitorius
COL.COLO4_20473 Corchorus olitorius
Cpa.g.sc604.1 Carica papaya
Cpa.g.sc65.126 Carica papaya
CsaV3_3G021660 Cucumis sativus L.
CsaV3_5G013600 Cucumis sativus L.
CsaV3_5G024000 Cucumis sativus L.
CSS0013438 Camellia sinensis var. sinensis
CSS0034708 Camellia sinensis var. sinensis
CSS0038589 Camellia sinensis var. sinensis
DCAR_007289 Daucus carota
DCAR_023610 Daucus carota
DCAR_026771 Daucus carota
DCAR_030216 Daucus carota
Dinv05165 Davidia involucrata
Dinv12995 Davidia involucrata
Dinv12996 Davidia involucrata
Dinv14876 Davidia involucrata
Dinv19009 Davidia involucrata
Duzib084G1264 Durio zibethinus
Duzib133G0351 Durio zibethinus
Duzib138G1698 Durio zibethinus
Duzib248G0073 Durio zibethinus
Duzib251G0950 Durio zibethinus
Duzib268G1159 Durio zibethinus
ECA233G5620 Erigeron canadensis
ECA246G2339 Erigeron canadensis
EL10Ac2g04486 Beta vulgaris
EL10Ac6g14226 Beta vulgaris
Eucgr.B02897 Eucalyptus grandis
Eucgr.F02820 Eucalyptus grandis
Eucgr.G02193 Eucalyptus grandis
FAN07G2241 Fragaria x ananassa
FAN12G0980 Fragaria x ananassa
FAN17G2747 Fragaria x ananassa
FAN22G1326 Fragaria x ananassa
FvH4_4g32310 Fragaria vesca
Glyma.02G247000 Glycine max
Glyma.07G165700 Glycine max
Glyma.07G216400 Glycine max
Glyma.09G118800 Glycine max
Glyma.11G218600 Glycine max
Glyma.14G069200 Glycine max
Glyma.18G038700 Glycine max
Glyma.20G013400 Glycine max
Gohir.A01G153000 Gossypium hirsutum
Gohir.A03G122400 Gossypium hirsutum
Gohir.A07G076700 Gossypium hirsutum
Gohir.A12G150400 Gossypium hirsutum
Gohir.D01G145800 Gossypium hirsutum
Gohir.D02G145100 Gossypium hirsutum
Gohir.D07G081500 Gossypium hirsutum
Gohir.D12G154000 Gossypium hirsutum
Gorai.001G086600 Gossypium raimondii
Gorai.002G180100 Gossypium raimondii
Gorai.005G162500 Gossypium raimondii
Gorai.008G166500 Gossypium raimondii
GSVIVG01008403001 Vitis vinifera
GSVIVG01011766001 Vitis vinifera
GSVIVG01030865001 Vitis vinifera
HanXRQChr08g0212701 Helianthus annuus
HanXRQChr10g0317211 Helianthus annuus
HanXRQChr12g0375891 Helianthus annuus
Haze_11013 Corylus avellana
Haze_14222 Corylus avellana
Hma1.2p1_0464F.1_g158260 Hydrangea macrophylla
Hma1.2p1_1319F.1_g275220 Hydrangea macrophylla
HPP92_023487 Vanilla planifolia
Hund24985 Selenicereus undatus
Lalb_Chr05g0219411 Lupinus albus
Lalb_Chr10g0096241 Lupinus albus
Lalb_Chr10g0104511 Lupinus albus
Lalb_Chr16g0384921 Lupinus albus
Lalb_Chr18g0053281 Lupinus albus
Lj2g0005929 Lotus japonicus
Lj3P874T38 Lonicera japonica
Lj4g0004842 Lotus japonicus
Lj4P178T29 Lonicera japonica
Lj6E747T3 Lonicera japonica
Lj6g0017654 Lotus japonicus
LjContig00141g0020601 Lotus japonicus
Lsat_1_v5_gn_3_83360 Lactuca sativa
Lsat_1_v5_gn_7_66081 Lactuca sativa
Lsat_1_v5_gn_8_43520 Lactuca sativa
Lsat_1_v5_gn_8_7900 Lactuca sativa
Manes.01G115500 Manihot esculenta
Manes.02G074500 Manihot esculenta
Manes.15G127000 Manihot esculenta
Manes.17G076200 Manihot esculenta
MBI09_g11539_MAGBIO Magnolia biondii
MBI16_g06246_MAGBIO Magnolia biondii
MD09G1261400 Malus domestica
MD16G1029200 Malus domestica
Medtr1g030740 Medicago truncatula
Medtr3g067730 Medicago truncatula
Medtr4g085100 Medicago truncatula
Medtr5g079610 Medicago truncatula
MELO3C001065.2 Cucumis melo
MELO3C001914.2 Cucumis melo
MELO3C028414.2 Cucumis melo
MELO3C034251.2 Cucumis melo
Migut.E00416 Erythranthe guttata
Migut.H00269 Erythranthe guttata
MSTRG.13578 Avicennia marina
MSTRG.2181 Avicennia marina
MSTRG.23615 Avicennia marina
MSTRG.7627 Avicennia marina
MSTRG.893 Avicennia marina
Nitab4.5_0002248g0050 Nicotiana tabacum
Nitab4.5_0004399g0080 Nicotiana tabacum
Nitab4.5_0004776g0090 Nicotiana tabacum
Nitab4.5_0004816g0080 Nicotiana tabacum
Nitab4.5_0004816g0090 Nicotiana tabacum
Nn3g18208 Nelumbo nucifera
Nn4g24129 Nelumbo nucifera
Oeu000900.1 Olea europaea
Oeu022838.1 Olea europaea
Oeu045876.1 Olea europaea
Oeu054754.1 Olea europaea
Os02g0732300 Oryza sativa ssp. japonica
Os06g0260000 Oryza sativa ssp. japonica
Os09g0403000 Oryza sativa ssp. japonica
Peaxi162Scf00003g00002 Petunia axillaris
Peaxi162Scf00159g00014 Petunia axillaris
Peaxi162Scf03779g00017 Petunia axillaris
Peaxi162Scf03779g00021 Petunia axillaris
PGR004G2190 Punica granatum
PGR042G3881 Punica granatum
PGR119G0193 Punica granatum
PGSC0003DMG400030503 Solanum tuberosum
PGSC0003DMG400030504 Solanum tuberosum
PGSC0003DMG400030546 Solanum tuberosum
PGSC0003DMG400030604 Solanum tuberosum
Phvul.001G232100 Phaseolus vulgaris
Phvul.002G092800 Phaseolus vulgaris
Phvul.003G023400 Phaseolus vulgaris
Phvul.008G233900 Phaseolus vulgaris
Potri.004G088200 Populus trichocarpa
Potri.008G128700 Populus trichocarpa
Potri.010G113800 Populus trichocarpa
Potri.017G128800 Populus trichocarpa
Prupe.1G323600 Prunus persica
Prupe.3G158800 Prunus persica
Psat0s3469g0040 Pisum sativum
Psat2g041760 Pisum sativum
Psat6g042520 Pisum sativum
Psat7g127200 Pisum sativum
PSO017G2187 Papaver somniferum
PSO478G1835 Papaver somniferum
QL01p001898 Quercus lobata
QL11p004127 Quercus lobata
RcHm_v2.0_Chr3g0493541 Rosa chinensis
RcHm_v2.0_Chr4g0441101 Rosa chinensis
Rhsim09G0098200 Rhododendron simsii
Rhsim10G0079200 Rhododendron simsii
Sabra04G0058800 Salix brachista
Sabra08G0097500 Salix brachista
Sabra10G0083700 Salix brachista
Sabra17G0107300 Salix brachista
SalBow3G3169 Salvia bowleyana
SalBow8G0193 Salvia bowleyana
Sc10g0000860 Simmondsia chinensis
Sc11g0004140 Simmondsia chinensis
Sed0003065 Sechium edule
Sed0005119 Sechium edule
Sed0008151 Sechium edule
Sed0024743 Sechium edule
Sed0025061 Sechium edule
SEGI_07272 Sequoiadendron giganteum
SEGI_08834 Sequoiadendron giganteum
SEGI_14028 Sequoiadendron giganteum
SEGI_16575 Sequoiadendron giganteum
SEGI_16730 Sequoiadendron giganteum
SEGI_16975 Sequoiadendron giganteum
SEGI_21454 Sequoiadendron giganteum
SEGI_26039 Sequoiadendron giganteum
SEGI_29387 Sequoiadendron giganteum
SEGI_31362 Sequoiadendron giganteum
SEGI_34866 Sequoiadendron giganteum
SEGI_39728 Sequoiadendron giganteum
SEGI_41167 Sequoiadendron giganteum
SGA_v2.0_scaffold149G36493 Striga asiatica
SGA_v2.0_scaffold38G15078 Striga asiatica
SGA_v2.0_scaffold39G15161 Striga asiatica
SGA_v2.0_scaffold50G18523 Striga asiatica
SHI04687 Sapria himalayana
SMO201G0138 Selaginella moellendorffii
Solyc02g091360.1 Solanum lycopersicum
Solyc05g008210.4 Solanum lycopersicum
Solyc05g008220.4 Solanum lycopersicum
Sopen02g035980 Solanum pennellii
Sopen05g004050 Solanum pennellii
Sopen05g004060 Solanum pennellii
Sopen05g004070 Solanum pennellii
Sp2g12790 Schrenkiella parvula
Sp5g21540 Schrenkiella parvula
Sp5g26180 Schrenkiella parvula
TAR019G0006 Trochodendron aralioides
TAR374G1310 Trochodendron aralioides
TAR629G2227 Trochodendron aralioides
THA.LOC104805602 Tarenaya hassleriana
THA.LOC104823846 Tarenaya hassleriana
THA.LOC104823857 Tarenaya hassleriana
Thecc.02G280300 Theobroma cacao
Thecc.04G121500 Theobroma cacao
Thhalv10001016m.g Eutrema salsugineum
Thhalv10019172m.g Eutrema salsugineum
Thhalv10019620m.g Eutrema salsugineum
TPR.G3484 Trifolium pratense
TPR.G35418 Trifolium pratense
TPR.G36447 Trifolium pratense
TPR.G36867 Trifolium pratense
TWI79G0834 Tripterygium wilfordii
unitig_0.g2333 Utricularia gibba
unitig_22.g5586 Utricularia gibba
unitig_24.g30595 Utricularia gibba
unitig_26.g10015 Utricularia gibba
unitig_749.g14009 Utricularia gibba
VMungo0251G0323 Vigna mungo
VMungo0647G1672 Vigna mungo
VMungo1215G0479 Vigna mungo
VMungo1383G2179 Vigna mungo
Zm00001eb041800 Zea mays
Zm00001eb147600 Zea mays
Zm00001eb190140 Zea mays
Zm00001eb253670 Zea mays
Zm00001eb280620 Zea mays
Zm00001eb312230 Zea mays
Zm00001eb379770 Zea mays

User provided reference genes

Program Settings