Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p07660 Brassica napus
A10p22550 Brassica napus
Aa31LG11G12920 Aethionema arabicum
Aa31LG5G13390 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4316 Anthoceros agrestis
Actinidia15512 Actinidia chinensis
Actinidia17065 Actinidia chinensis
Actinidia28614 Actinidia chinensis
Actinidia28750 Actinidia chinensis
Actinidia33798 Actinidia chinensis
Ah.00g001080 Amaranthus hybridus
AL1G51420 Arabidopsis lyrata
AL3G12340 Arabidopsis lyrata
AL6G27670 Arabidopsis lyrata
Aqoxy3G02387 Aquilegia oxysepala
Aqoxy6G01570 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0W4FI5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.29ZW60 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.33TIY8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5UU89E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A9GYM3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BYM2EW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LD9RN9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VDK392 Arachis hypogaea
AT1G42960 Arabidopsis thaliana
AT3G02900 Arabidopsis thaliana
AT5G16660 Arabidopsis thaliana
ATR0049G035 Amborella trichopoda
ATR0807G156 Amborella trichopoda
Atru.chr12.1955 Acer truncatum
Atru.chr13.91 Acer truncatum
AUR62002090 Chenopodium quinoa
AUR62028208 Chenopodium quinoa
AUR62035152 Chenopodium quinoa
BcaB04g17774 Brassica carinata
BcaB08g36830 Brassica carinata
BcaC07g37452 Brassica carinata
BolC8t47773H Brassica oleracea
BolC9t58879H Brassica oleracea
BraA03t10114Z Brassica rapa
BraA08t32780Z Brassica rapa
BraA10t44317Z Brassica rapa
C08p09240 Brassica napus
CAN.G208.28 Capsicum annuum
CANSAT21G0930 Cannabis sativa
CANSAT54G2719 Cannabis sativa
CARHR035220 Cardamine hirsuta
CARHR196530 Cardamine hirsuta
Carub.0001s3434 Capsella rubella
Carub.0003s0202 Capsella rubella
Carub.0006s1487 Capsella rubella
Ca_15397_v3 Cicer arietinum L.
Ca_24430_v3 Cicer arietinum L.
Ca_24992_v3 Cicer arietinum L.
CBR_g49685 Chara braunii
Cc02_g00130 Coffea canephora
Cc07_g12030 Coffea canephora
Cc10_g00400 Coffea canephora
CDE06G0145 Ceratophyllum demersum
CDE06G0397 Ceratophyllum demersum
CDE06G2203 Ceratophyllum demersum
CDE12G0693 Ceratophyllum demersum
Cfa007100 Carpinus fangiana
Cfa014119 Carpinus fangiana
Cfa016072 Carpinus fangiana
Ciclev10002493m.g Citrus clementina
Ciclev10033542m.g Citrus clementina
CiPaw.05G213200 Carya illinoinensis
CiPaw.06G035900 Carya illinoinensis
CiPaw.07G135300 Carya illinoinensis
CiPaw.08G076000 Carya illinoinensis
CiPaw.08G182200 Carya illinoinensis
ClCG09G017260 Citrullus lanatus
ClCG11G018900 Citrullus lanatus
COL.COLO4_05641 Corchorus olitorius
COL.COLO4_15148 Corchorus olitorius
COL.COLO4_37861 Corchorus olitorius
Cpa.g.sc26.158 Carica papaya
Cpa.g.sc43.127 Carica papaya
Cpa.g.sc6.356 Carica papaya
Cre06.g278195 Chlamydomonas reinhardtii
CsaV3_2G014040 Cucumis sativus L.
CsaV3_2G036670 Cucumis sativus L.
CsaV3_4G037500 Cucumis sativus L.
CSS0012488 Camellia sinensis var. sinensis
CSS0016090 Camellia sinensis var. sinensis
CSS0024609 Camellia sinensis var. sinensis
CSS0032084 Camellia sinensis var. sinensis
CSS0034362 Camellia sinensis var. sinensis
CSS0036961 Camellia sinensis var. sinensis
DCAR_009026 Daucus carota
DCAR_009862 Daucus carota
DCAR_016790 Daucus carota
Dinv10419 Davidia involucrata
Dinv17245 Davidia involucrata
Dinv28308 Davidia involucrata
Dinv29128 Davidia involucrata
Dinv31973 Davidia involucrata
Dinv40203 Davidia involucrata
Duzib041G0204 Durio zibethinus
Duzib093G1091 Durio zibethinus
Duzib116G0687 Durio zibethinus
Duzib128G1086 Durio zibethinus
Duzib128G1144 Durio zibethinus
ECA232G1934 Erigeron canadensis
ECA232G3630 Erigeron canadensis
EL10Ac1g01900 Beta vulgaris
EL10Ac3g05046 Beta vulgaris
Eucgr.A02989 Eucalyptus grandis
Eucgr.F01794 Eucalyptus grandis
Eucgr.F01798 Eucalyptus grandis
Eucgr.F03576 Eucalyptus grandis
Eucgr.F03579 Eucalyptus grandis
Eucgr.I02214 Eucalyptus grandis
FAN01G1266 Fragaria x ananassa
FAN03G1573 Fragaria x ananassa
FAN04G3258 Fragaria x ananassa
FAN10G2385 Fragaria x ananassa
FAN19G0840 Fragaria x ananassa
FAN23G0601 Fragaria x ananassa
FAN26G0578 Fragaria x ananassa
FAN28G2793 Fragaria x ananassa
FvH4_1g10160 Fragaria vesca
FvH4_5g25770 Fragaria vesca
FvH4_7g34210 Fragaria vesca
Glyma.01G157600 Glycine max
Glyma.01G234200 Glycine max
Glyma.04G015800 Glycine max
Glyma.06G015800 Glycine max
Glyma.11G008700 Glycine max
Glyma.11G087400 Glycine max
Gohir.A01G102900 Gossypium hirsutum
Gohir.A02G085600 Gossypium hirsutum
Gohir.A02G126500 Gossypium hirsutum
Gohir.A11G303000 Gossypium hirsutum
Gohir.A13G157300 Gossypium hirsutum
Gohir.D01G088200 Gossypium hirsutum
Gohir.D02G101300 Gossypium hirsutum
Gohir.D11G318300 Gossypium hirsutum
Gohir.D13G162100 Gossypium hirsutum
Gorai.002G113900 Gossypium raimondii
Gorai.003G057200 Gossypium raimondii
Gorai.005G114700 Gossypium raimondii
Gorai.007G348300 Gossypium raimondii
Gorai.013G184100 Gossypium raimondii
GSVIVG01013404001 Vitis vinifera
GSVIVG01022303001 Vitis vinifera
GSVIVG01024331001 Vitis vinifera
HanXRQChr05g0144791 Helianthus annuus
HanXRQChr14g0427821 Helianthus annuus
HanXRQChr16g0512721 Helianthus annuus
HanXRQChr16g0531981 Helianthus annuus
Haze_03633 Corylus avellana
Haze_22839 Corylus avellana
Hma1.2p1_0085F.1_g044500 Hydrangea macrophylla
Hma1.2p1_0419F.1_g149490 Hydrangea macrophylla
Hma1.2p1_0612F.1_g188960 Hydrangea macrophylla
Hma1.2p1_0739F.1_g211240 Hydrangea macrophylla
HPP92_002569 Vanilla planifolia
HPP92_002588 Vanilla planifolia
HPP92_012828 Vanilla planifolia
HPP92_028246 Vanilla planifolia
Hund05088 Selenicereus undatus
Hund09809 Selenicereus undatus
Lalb_Chr05g0211201 Lupinus albus
Lalb_Chr05g0214901 Lupinus albus
Lalb_Chr09g0324801 Lupinus albus
Lalb_Chr11g0061461 Lupinus albus
Lalb_Chr16g0380141 Lupinus albus
Lalb_Chr23g0265631 Lupinus albus
Lj1g0012342 Lotus japonicus
Lj2A502T33 Lonicera japonica
Lj2g0013657 Lotus japonicus
Lj3A884G47 Lonicera japonica
Lj3g0014147 Lotus japonicus
Lj4A239T48 Lonicera japonica
Lj4A810G55 Lonicera japonica
LjContig00222g0009289 Lotus japonicus
Lsat_1_v5_gn_0_40520 Lactuca sativa
Lsat_1_v5_gn_2_1441 Lactuca sativa
Lsat_1_v5_gn_3_69860 Lactuca sativa
Lsat_1_v5_gn_9_47781 Lactuca sativa
Manes.05G125300 Manihot esculenta
Manes.08G161240 Manihot esculenta
Manes.09G129400 Manihot esculenta
Manes.18G003200 Manihot esculenta
Mapoly0007s0082 Marchantia polymorpha
MBI04_g22935_MAGBIO Magnolia biondii
MBI05_g21105_MAGBIO Magnolia biondii
MBI05_g21106_MAGBIO Magnolia biondii
MBI08_g06886_MAGBIO Magnolia biondii
MCO14G564 Micromonas commoda
MD00G1135400 Malus domestica
MD01G1238800 Malus domestica
MD02G1113600 Malus domestica
MD06G1006300 Malus domestica
MD07G1310700 Malus domestica
MD15G1228800 Malus domestica
Medtr3g115930 Medicago truncatula
Medtr5g007210 Medicago truncatula
Medtr5g024680 Medicago truncatula
MELO3C017045.2 Cucumis melo
MELO3C021897.2 Cucumis melo
Migut.F00932 Erythranthe guttata
Migut.N02975 Erythranthe guttata
MSTRG.22090 Avicennia marina
MSTRG.24506 Avicennia marina
MSTRG.8557 Avicennia marina
Nitab4.5_0000021g0830 Nicotiana tabacum
Nitab4.5_0000407g0090 Nicotiana tabacum
Nitab4.5_0000486g0190 Nicotiana tabacum
Nitab4.5_0005968g0010 Nicotiana tabacum
Nitab4.5_0006485g0020 Nicotiana tabacum
Nitab4.5_0009646g0040 Nicotiana tabacum
Nitab4.5_0010090g0020 Nicotiana tabacum
Nn1g00514 Nelumbo nucifera
Nn5g31019 Nelumbo nucifera
Nn6g31669 Nelumbo nucifera
Oeu012538.2 Olea europaea
Oeu017904.1 Olea europaea
Oeu026113.1 Olea europaea
Oeu046978.1 Olea europaea
Oeu062564.1 Olea europaea
Os12g0583400 Oryza sativa ssp. japonica
Peaxi162Scf00064g01327 Petunia axillaris
Peaxi162Scf00133g00525 Petunia axillaris
Peaxi162Scf00516g00521 Petunia axillaris
Peaxi162Scf00680g00037 Petunia axillaris
Peaxi162Scf01114g00011 Petunia axillaris
PGR031G1932 Punica granatum
PGR042G0812 Punica granatum
PGR083G1401 Punica granatum
PGR119G2119 Punica granatum
PGSC0003DMG400009993 Solanum tuberosum
PGSC0003DMG400026488 Solanum tuberosum
PGSC0003DMG400029407 Solanum tuberosum
Phvul.002G041600 Phaseolus vulgaris
Phvul.002G117800 Phaseolus vulgaris
Phvul.009G006700 Phaseolus vulgaris
Potri.005G099233 Populus trichocarpa
Potri.005G254200 Populus trichocarpa
Potri.007G064100 Populus trichocarpa
Potri.013G078100 Populus trichocarpa
Potri.019G041700 Populus trichocarpa
Pp3c22_20660 Physcomitrium patens
Pp3c9_14620 Physcomitrium patens
Prupe.2G328900 Prunus persica
Prupe.5G007900 Prunus persica
Prupe.7G185300 Prunus persica
Psat0s2012g0080 Pisum sativum
Psat2g148360 Pisum sativum
Psat2g154920 Pisum sativum
Psat5g010480 Pisum sativum
Psat5g246600 Pisum sativum
PSO063G7129 Papaver somniferum
PSO170G4897 Papaver somniferum
PSO210G4686 Papaver somniferum
PSO541G0962 Papaver somniferum
PSO782G0197 Papaver somniferum
QL02p015248 Quercus lobata
QL03p010156 Quercus lobata
QL05p045171 Quercus lobata
QL05p045866 Quercus lobata
QL06p053245 Quercus lobata
QL09p020820 Quercus lobata
QL10p008349 Quercus lobata
QL11p008146 Quercus lobata
QL11p008296 Quercus lobata
RcHm_v2.0_Chr1g0384571 Rosa chinensis
RcHm_v2.0_Chr2g0096941 Rosa chinensis
RcHm_v2.0_Chr7g0216241 Rosa chinensis
Rhsim03G0224100 Rhododendron simsii
Rhsim06G0004500 Rhododendron simsii
Rhsim09G0213800 Rhododendron simsii
Rhsim10G0192700 Rhododendron simsii
Sabra05G0081700 Salix brachista
Sabra07G0051600 Salix brachista
Sabra13G0067100 Salix brachista
Sabra19G0052100 Salix brachista
SalBow2G3444 Salvia bowleyana
SalBow7G3190 Salvia bowleyana
Sc13g0010980 Simmondsia chinensis
Sc15g0004110 Simmondsia chinensis
Sed0008334 Sechium edule
Sed0020344 Sechium edule
Sed0025867 Sechium edule
SEGI_08056 Sequoiadendron giganteum
SEGI_28288 Sequoiadendron giganteum
SGA_v2.0_scaffold50G18459 Striga asiatica
SGA_v2.0_scaffold59G20755 Striga asiatica
SMO361G0346 Selaginella moellendorffii
SMO361G0798 Selaginella moellendorffii
Solyc03g097250.4 Solanum lycopersicum
Solyc04g082640.3 Solanum lycopersicum
Solyc12g094630.2 Solanum lycopersicum
Sopen03g028000 Solanum pennellii
Sopen04g036270 Solanum pennellii
Sopen12g031530 Solanum pennellii
Sp1g32110 Schrenkiella parvula
Sp3g01950 Schrenkiella parvula
Sp6g27490 Schrenkiella parvula
TAR376G0952 Trochodendron aralioides
TAR628G1224 Trochodendron aralioides
TAR629G0880 Trochodendron aralioides
TAR636G1479 Trochodendron aralioides
THA.LOC104801939 Tarenaya hassleriana
THA.LOC104802932 Tarenaya hassleriana
THA.LOC104806873 Tarenaya hassleriana
THA.LOC104813181 Tarenaya hassleriana
THA.LOC104820904 Tarenaya hassleriana
Thecc.01G003000 Theobroma cacao
Thecc.05G222200 Theobroma cacao
Thecc.08G063300 Theobroma cacao
Thhalv10005036m.g Eutrema salsugineum
Thhalv10014871m.g Eutrema salsugineum
TPR.G33780 Trifolium pratense
TPR.G37921 Trifolium pratense
TPR.G38097 Trifolium pratense
TWI12G0573 Tripterygium wilfordii
TWI34G0142 Tripterygium wilfordii
TWI36G0255 Tripterygium wilfordii
TWI39G0182 Tripterygium wilfordii
TWI53G1787 Tripterygium wilfordii
TWI60G1608 Tripterygium wilfordii
unitig_0.g2076 Utricularia gibba
unitig_736.g22837 Utricularia gibba
unitig_747.g21535 Utricularia gibba
unitig_90.g27541 Utricularia gibba
vmacro06374 Vaccinium macrocarpon
vmacro06375 Vaccinium macrocarpon
vmacro20617 Vaccinium macrocarpon
vmacro20618 Vaccinium macrocarpon
vmacro22186 Vaccinium macrocarpon
VMungo1215G2446 Vigna mungo
VMungo1215G2959 Vigna mungo
VMungo1309G1464 Vigna mungo

User provided reference genes

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