Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p12760 Brassica napus
A02p14170 Brassica napus
A07p32600 Brassica napus
A07p33940 Brassica napus
Aa31LG3G6950 Aethionema arabicum
Aa31LG7G9840 Aethionema arabicum
Aa31sc103G10 Aethionema arabicum
Actinidia08071 Actinidia chinensis
Actinidia08870 Actinidia chinensis
Actinidia09651 Actinidia chinensis
Actinidia20710 Actinidia chinensis
Actinidia30648 Actinidia chinensis
Actinidia36805 Actinidia chinensis
Ah.02g130910 Amaranthus hybridus
Ah.03g136150 Amaranthus hybridus
AL2G25890 Arabidopsis lyrata
AL631U10010 Arabidopsis lyrata
AL8G24700 Arabidopsis lyrata
Aqoxy5G03381 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1797GX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.640MI7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DK6823 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JX210Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LX0PL1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N8G47B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XA5S0H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XT23Y2 Arachis hypogaea
AT1G67340 Arabidopsis thaliana
AT5G50450 Arabidopsis thaliana
ATR0561G255 Amborella trichopoda
Atru.chr11.2324 Acer truncatum
Atru.chr5.1973 Acer truncatum
Atru.chr9.1133 Acer truncatum
AUR62005620 Chenopodium quinoa
AUR62024110 Chenopodium quinoa
BcaB03g15205 Brassica carinata
BcaB03g15348 Brassica carinata
BcaB05g24046 Brassica carinata
BcaB05g24048 Brassica carinata
BcaB05g24049 Brassica carinata
BcaB05g24270 Brassica carinata
BcaB05g24275 Brassica carinata
BcaB05g24276 Brassica carinata
BcaC03g14647 Brassica carinata
BcaC03g14835 Brassica carinata
BcaC08g46169 Brassica carinata
BolC2t08222H Brassica oleracea
BolC2t08439H Brassica oleracea
BolC6t38966H Brassica oleracea
BolC6t39146H Brassica oleracea
BraA02t06333Z Brassica rapa
BraA02t06480Z Brassica rapa
BraA07t30884Z Brassica rapa
BraA07t31021Z Brassica rapa
C02p20820 Brassica napus
C02p22950 Brassica napus
C06p38740 Brassica napus
C06p42920 Brassica napus
CAN.G593.4 Capsicum annuum
CANSAT01G0790 Cannabis sativa
CANSAT25G3359 Cannabis sativa
CANSAT80G1538 Cannabis sativa
CARHR059880 Cardamine hirsuta
CARHR257840 Cardamine hirsuta
Carub.0002s1363 Capsella rubella
Carub.0008s1057 Capsella rubella
Ca_16045_v3 Cicer arietinum L.
Ca_16459_v3 Cicer arietinum L.
Ca_18028_v3 Cicer arietinum L.
CBR_g445 Chara braunii
CBR_g48297 Chara braunii
Cc11_g16900 Coffea canephora
CDE02G2537 Ceratophyllum demersum
CDE05G0615 Ceratophyllum demersum
CDE05G2068 Ceratophyllum demersum
CDE06G2021 Ceratophyllum demersum
Cfa009370 Carpinus fangiana
Cfa015721 Carpinus fangiana
Cfa018796 Carpinus fangiana
Ciclev10020922m.g Citrus clementina
Ciclev10031699m.g Citrus clementina
CiPaw.05G109800 Carya illinoinensis
CiPaw.06G102600 Carya illinoinensis
CiPaw.11G007200 Carya illinoinensis
CiPaw.12G043100 Carya illinoinensis
ClCG03G003750 Citrullus lanatus
ClCG06G017880 Citrullus lanatus
ClCG08G017150 Citrullus lanatus
ClCG11G013670 Citrullus lanatus
COL.COLO4_20402 Corchorus olitorius
COL.COLO4_28124 Corchorus olitorius
Cpa.g.sc13.117 Carica papaya
Cpa.g.sc43.57 Carica papaya
CsaV3_1G000570 Cucumis sativus L.
CsaV3_1G009640 Cucumis sativus L.
CsaV3_2G025440 Cucumis sativus L.
CsaV3_5G030280 Cucumis sativus L.
CSS0013943 Camellia sinensis var. sinensis
CSS0014916 Camellia sinensis var. sinensis
CSS0026742 Camellia sinensis var. sinensis
DCAR_016390 Daucus carota
DCAR_024096 Daucus carota
DCAR_026465 Daucus carota
Dinv10956 Davidia involucrata
Dinv11171 Davidia involucrata
Dinv17563 Davidia involucrata
Duzib084G0203 Durio zibethinus
Duzib205G1472 Durio zibethinus
Duzib248G0049 Durio zibethinus
Duzib251G0614 Durio zibethinus
Duzib268G1458 Durio zibethinus
ECA232G1638 Erigeron canadensis
ECA233G4862 Erigeron canadensis
ECA234G1125 Erigeron canadensis
ECA246G4145 Erigeron canadensis
EL10Ac6g13502 Beta vulgaris
Eucgr.B03492 Eucalyptus grandis
Eucgr.H04638 Eucalyptus grandis
FAN04G1262 Fragaria x ananassa
FAN04G2763 Fragaria x ananassa
FAN07G0970 Fragaria x ananassa
FAN08G1729 Fragaria x ananassa
FAN13G0026 Fragaria x ananassa
FAN17G1837 Fragaria x ananassa
FAN18G1215 Fragaria x ananassa
FAN22G0872 Fragaria x ananassa
FvH4_4g23760 Fragaria vesca
FvH4_5g08330 Fragaria vesca
Glyma.04G195700 Glycine max
Glyma.05G147400 Glycine max
Glyma.06G170100 Glycine max
Glyma.08G104400 Glycine max
Glyma.11G250600 Glycine max
Glyma.18G006600 Glycine max
Gohir.A01G158300 Gossypium hirsutum
Gohir.A03G126100 Gossypium hirsutum
Gohir.A07G051300 Gossypium hirsutum
Gohir.A12G148700 Gossypium hirsutum
Gohir.A12G189500 Gossypium hirsutum
Gohir.D01G147600 Gossypium hirsutum
Gohir.D02G149100 Gossypium hirsutum
Gohir.D07G055700 Gossypium hirsutum
Gohir.D12G152600 Gossypium hirsutum
Gohir.D12G191900 Gossypium hirsutum
Gorai.001G059100 Gossypium raimondii
Gorai.002G183600 Gossypium raimondii
Gorai.005G167000 Gossypium raimondii
Gorai.008G165100 Gossypium raimondii
Gorai.008G206200 Gossypium raimondii
GSVIVG01010486001 Vitis vinifera
HanXRQChr06g0174921 Helianthus annuus
HanXRQChr08g0207811 Helianthus annuus
HanXRQChr09g0273171 Helianthus annuus
HanXRQChr12g0372451 Helianthus annuus
HanXRQChr13g0426331 Helianthus annuus
HanXRQChr16g0498161 Helianthus annuus
HanXRQChr17g0540241 Helianthus annuus
HanXRQChr17g0569031 Helianthus annuus
Haze_07137 Corylus avellana
Haze_12419 Corylus avellana
Hma1.2p1_0014F.1_g009440 Hydrangea macrophylla
Hma1.2p1_0065F.1_g035490 Hydrangea macrophylla
Hma1.2p1_0275F.1_g110760 Hydrangea macrophylla
HPP92_004581 Vanilla planifolia
HPP92_008073 Vanilla planifolia
HPP92_008074 Vanilla planifolia
HPP92_013613 Vanilla planifolia
HPP92_021365 Vanilla planifolia
HPP92_023379 Vanilla planifolia
Hund06090 Selenicereus undatus
Hund10161 Selenicereus undatus
Hund25465 Selenicereus undatus
Lalb_Chr07g0187131 Lupinus albus
Lalb_Chr08g0237151 Lupinus albus
Lalb_Chr11g0069571 Lupinus albus
Lalb_Chr12g0206181 Lupinus albus
Lalb_Chr23g0278051 Lupinus albus
Lalb_Chr23g0278061 Lupinus albus
Lj1g0026421 Lotus japonicus
Lj3A1068T45 Lonicera japonica
Lj4g0002567 Lotus japonicus
Lj4g0018673 Lotus japonicus
Lj6A826T55 Lonicera japonica
Lj7A528T58 Lonicera japonica
Lj9A479T56 Lonicera japonica
Lju2527C1G2 Lonicera japonica
Lsat_1_v5_gn_1_28940 Lactuca sativa
Lsat_1_v5_gn_3_31140 Lactuca sativa
Lsat_1_v5_gn_4_3441 Lactuca sativa
Lsat_1_v5_gn_4_79881 Lactuca sativa
Lsat_1_v5_gn_6_111401 Lactuca sativa
Lsat_1_v5_gn_8_148441 Lactuca sativa
Manes.06G119500 Manihot esculenta
Manes.12G011300 Manihot esculenta
Manes.13G012200 Manihot esculenta
Manes.14G051300 Manihot esculenta
Mapoly0001s0142 Marchantia polymorpha
Mapoly0008s0147 Marchantia polymorpha
Mapoly0040s0016 Marchantia polymorpha
MBI07_g31019_MAGBIO Magnolia biondii
MBI11_g23475_MAGBIO Magnolia biondii
MCO03G537 Micromonas commoda
MCO13G441 Micromonas commoda
MD06G1141800 Malus domestica
MD13G1119000 Malus domestica
MD14G1157000 Malus domestica
MD16G1119400 Malus domestica
Medtr2g045135 Medicago truncatula
Medtr2g045140 Medicago truncatula
Medtr3g085330 Medicago truncatula
Medtr3g099300 Medicago truncatula
Medtr8g080640 Medicago truncatula
MELO3C002360.2 Cucumis melo
MELO3C004701.2 Cucumis melo
MELO3C010742.2 Cucumis melo
MELO3C011866.2 Cucumis melo
MELO3C026207.2 Cucumis melo
MELO3C027887.2 Cucumis melo
MELO3C031855.2 Cucumis melo
Migut.E00017 Erythranthe guttata
Migut.K00733 Erythranthe guttata
MSTRG.13310 Avicennia marina
MSTRG.2460 Avicennia marina
MSTRG.504 Avicennia marina
MSTRG.8003 Avicennia marina
Nitab4.5_0000039g0010 Nicotiana tabacum
Nitab4.5_0009043g0010 Nicotiana tabacum
Nn1g03339 Nelumbo nucifera
Nn2g13716 Nelumbo nucifera
Nn3g16464 Nelumbo nucifera
Nn4g22319 Nelumbo nucifera
Nn4g22320 Nelumbo nucifera
Nn4g22323 Nelumbo nucifera
Oeu006528.1 Olea europaea
Oeu036870.1 Olea europaea
Oeu041664.1 Olea europaea
Os01g0921800 Oryza sativa ssp. japonica
Os02g0506400 Oryza sativa ssp. japonica
Os04g0385600 Oryza sativa ssp. japonica
Os05g0388151 Oryza sativa ssp. japonica
Os11g0488900 Oryza sativa ssp. japonica
Peaxi162Scf00128g01229 Petunia axillaris
PGR102G0821 Punica granatum
PGR119G1917 Punica granatum
PGSC0003DMG400029105 Solanum tuberosum
Phvul.001G261900 Phaseolus vulgaris
Phvul.009G166400 Phaseolus vulgaris
Phvul.L002146 Phaseolus vulgaris
Potri.001G056800 Populus trichocarpa
Potri.003G171400 Populus trichocarpa
Potri.012G097600 Populus trichocarpa
Potri.015G096200 Populus trichocarpa
PRCOL_00003867 Prasinoderma coloniale
Prupe.1G225800 Prunus persica
Prupe.5G151000 Prunus persica
Psat5g051600 Pisum sativum
Psat5g095600 Pisum sativum
Psat7g076920 Pisum sativum
PSO017G2290 Papaver somniferum
PSO017G6438 Papaver somniferum
PSO478G0822 Papaver somniferum
PSO478G2749 Papaver somniferum
QL03p052748 Quercus lobata
QL05p031622 Quercus lobata
QL05p031841 Quercus lobata
QL05p033581 Quercus lobata
QL10p002921 Quercus lobata
RcHm_v2.0_Chr4g0430251 Rosa chinensis
RcHm_v2.0_Chr7g0190191 Rosa chinensis
Rhsim12G0025800 Rhododendron simsii
Rhsim12G0099700 Rhododendron simsii
Rhsim12G0174500 Rhododendron simsii
Sabra01G0041200 Salix brachista
Sabra03G0125500 Salix brachista
Sabra12G0071500 Salix brachista
Sabra15G0117000 Salix brachista
SalBow2G1525 Salvia bowleyana
SalBow8G4764 Salvia bowleyana
Sc04g0000660 Simmondsia chinensis
Sc04g0010130 Simmondsia chinensis
Sc11g0000460 Simmondsia chinensis
Sc14g0009060 Simmondsia chinensis
Sed0007485 Sechium edule
Sed0009301 Sechium edule
Sed0009544 Sechium edule
Sed0017688 Sechium edule
SEGI_00973 Sequoiadendron giganteum
SEGI_02487 Sequoiadendron giganteum
SEGI_03815 Sequoiadendron giganteum
SEGI_09191 Sequoiadendron giganteum
SEGI_09234 Sequoiadendron giganteum
SEGI_18512 Sequoiadendron giganteum
SEGI_27624 Sequoiadendron giganteum
SEGI_33630 Sequoiadendron giganteum
SEGI_37329 Sequoiadendron giganteum
SEGI_41586 Sequoiadendron giganteum
SGA_v2.0_scaffold391G50632 Striga asiatica
SGA_v2.0_scaffold87G27157 Striga asiatica
SMO116G0089 Selaginella moellendorffii
SMO364G0427 Selaginella moellendorffii
Solyc05g015420.4 Solanum lycopersicum
Sopen05g010760 Solanum pennellii
Sp5g22290 Schrenkiella parvula
Sp6g12630 Schrenkiella parvula
TAR371G0192 Trochodendron aralioides
TAR629G3412 Trochodendron aralioides
THA.LOC104807898 Tarenaya hassleriana
THA.LOC104811589 Tarenaya hassleriana
THA.LOC104825507 Tarenaya hassleriana
Thecc.02G208700 Theobroma cacao
Thecc.03G129100 Theobroma cacao
Thhalv10013738m.g Eutrema salsugineum
Thhalv10018922m.g Eutrema salsugineum
TPR.G14224 Trifolium pratense
TPR.G17097 Trifolium pratense
TPR.G17788 Trifolium pratense
TPR.G33495 Trifolium pratense
TWI14G1359 Tripterygium wilfordii
TWI18G0288 Tripterygium wilfordii
TWI23G0191 Tripterygium wilfordii
TWI36G0603 Tripterygium wilfordii
TWI75G1443 Tripterygium wilfordii
unitig_21.g20390 Utricularia gibba
unitig_21.g20391 Utricularia gibba
unitig_22.g6947 Utricularia gibba
unitig_26.g10398 Utricularia gibba
unitig_699.g19953 Utricularia gibba
unitig_699.g19954 Utricularia gibba
unitig_744.g24423 Utricularia gibba
vmacro01060 Vaccinium macrocarpon
vmacro16106 Vaccinium macrocarpon
vmacro16678 Vaccinium macrocarpon
VMungo0251G2022 Vigna mungo
VMungo1309G3113 Vigna mungo
VMungo1383G1076 Vigna mungo
Zm00001eb085610 Zea mays
Zm00001eb143150 Zea mays
Zm00001eb169560 Zea mays
Zm00001eb241170 Zea mays
Zm00001eb364370 Zea mays

User provided reference genes

Program Settings