Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p14000 Brassica napus
A06p03050 Brassica napus
A10p12720 Brassica napus
A10p25520 Brassica napus
Aa31LG10G3770 Aethionema arabicum
Aa31LG3G11470 Aethionema arabicum
Aa31LG3G14930 Aethionema arabicum
Actinidia04775 Actinidia chinensis
Actinidia05037 Actinidia chinensis
Actinidia06962 Actinidia chinensis
Actinidia16381 Actinidia chinensis
Actinidia21449 Actinidia chinensis
Actinidia35383 Actinidia chinensis
Actinidia39076 Actinidia chinensis
Ah.04g166410 Amaranthus hybridus
Ah.06g181140 Amaranthus hybridus
AL1G58190 Arabidopsis lyrata
AL1G58210 Arabidopsis lyrata
AL6G23100 Arabidopsis lyrata
AL8G31080 Arabidopsis lyrata
Aqoxy1G00363 Aquilegia oxysepala
Aqoxy1G04020 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1FAC7R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7V3AMW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DNDD6Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JK1SXN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JUM6FF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L8VQTA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RR5YUI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WE34J8 Arachis hypogaea
AT1G50530 Arabidopsis thaliana
AT1G50570 Arabidopsis thaliana
AT5G12300 Arabidopsis thaliana
AT5G55530 Arabidopsis thaliana
ATR0712G073 Amborella trichopoda
ATR0745G036 Amborella trichopoda
Atru.chr2.3625 Acer truncatum
Atru.chr3.2756 Acer truncatum
AUR62000188 Chenopodium quinoa
AUR62006538 Chenopodium quinoa
AUR62015939 Chenopodium quinoa
AUR62040670 Chenopodium quinoa
BcaB01g04362 Brassica carinata
BcaB07g33490 Brassica carinata
BcaB08g35908 Brassica carinata
BcaC01g06373 Brassica carinata
BcaC08g43225 Brassica carinata
BolC3t14064H Brassica oleracea
BolC6t35682H Brassica oleracea
BolC9t57485H Brassica oleracea
BolC9t59293H Brassica oleracea
BraA03t10699Z Brassica rapa
BraA06t23517Z Brassica rapa
BraA10t43364Z Brassica rapa
BraA10t44616Z Brassica rapa
C03p16440 Brassica napus
C06p05710 Brassica napus
C09p46200 Brassica napus
C09p64600 Brassica napus
CAN.G337.33 Capsicum annuum
CAN.G868.11 Capsicum annuum
CAN.G897.1 Capsicum annuum
CAN.G96.13 Capsicum annuum
CANSAT11G1937 Cannabis sativa
CANSAT54G1670 Cannabis sativa
CARHR040550 Cardamine hirsuta
CARHR200810 Cardamine hirsuta
CARHR268850 Cardamine hirsuta
Carub.0001s3960 Capsella rubella
Carub.0006s1081 Capsella rubella
Carub.0008s1588 Capsella rubella
Ca_03984_v3 Cicer arietinum L.
Ca_06364_v3 Cicer arietinum L.
Ca_16740_v3 Cicer arietinum L.
Cc00_g04160 Coffea canephora
Cc05_g14590 Coffea canephora
CDE10G0054 Ceratophyllum demersum
CDE10G0274 Ceratophyllum demersum
Cfa009850 Carpinus fangiana
Cfa020237 Carpinus fangiana
Ciclev10008378m.g Citrus clementina
Ciclev10015355m.g Citrus clementina
Ciclev10024442m.g Citrus clementina
CiPaw.11G200100 Carya illinoinensis
CiPaw.12G135400 Carya illinoinensis
CiPaw.13G151200 Carya illinoinensis
ClCG03G012600 Citrullus lanatus
ClCG09G021020 Citrullus lanatus
ClCG10G004640 Citrullus lanatus
COL.COLO4_09776 Corchorus olitorius
COL.COLO4_35672 Corchorus olitorius
Cpa.g.sc12.203 Carica papaya
CsaV3_1G043380 Cucumis sativus L.
CsaV3_3G004440 Cucumis sativus L.
CsaV3_7G018670 Cucumis sativus L.
CSS0003859 Camellia sinensis var. sinensis
CSS0017114 Camellia sinensis var. sinensis
CSS0025254 Camellia sinensis var. sinensis
CSS0025513 Camellia sinensis var. sinensis
CSS0038590 Camellia sinensis var. sinensis
CSS0047453 Camellia sinensis var. sinensis
CSS0050376 Camellia sinensis var. sinensis
DCAR_000878 Daucus carota
DCAR_002113 Daucus carota
DCAR_009182 Daucus carota
DCAR_011029 Daucus carota
DCAR_012903 Daucus carota
DCAR_013209 Daucus carota
DCAR_019052 Daucus carota
Dinv05844 Davidia involucrata
Dinv10303 Davidia involucrata
Dinv36170 Davidia involucrata
Dinv40829 Davidia involucrata
Duzib168G0074 Durio zibethinus
Duzib170G0184 Durio zibethinus
Duzib170G0265 Durio zibethinus
Duzib213G0948 Durio zibethinus
ECA238G2276 Erigeron canadensis
ECA240G2394 Erigeron canadensis
ECA246G3751 Erigeron canadensis
EL10Ac4g07625 Beta vulgaris
Eucgr.B03732 Eucalyptus grandis
Eucgr.F00626 Eucalyptus grandis
FAN11G0778 Fragaria x ananassa
FAN11G3277 Fragaria x ananassa
FAN16G1320 Fragaria x ananassa
FAN16G2012 Fragaria x ananassa
FAN21G1149 Fragaria x ananassa
FAN21G2839 Fragaria x ananassa
FAN25G1469 Fragaria x ananassa
FAN25G2451 Fragaria x ananassa
FAN25G2764 Fragaria x ananassa
FvH4_3g23940 Fragaria vesca
FvH4_3g27890 Fragaria vesca
Glyma.02G279900 Glycine max
Glyma.02G296900 Glycine max
Glyma.07G230700 Glycine max
Glyma.08G325300 Glycine max
Glyma.14G016700 Glycine max
Glyma.14G034900 Glycine max
Glyma.18G081900 Glycine max
Glyma.20G037600 Glycine max
Gohir.A01G086500 Gossypium hirsutum
Gohir.A04G009900 Gossypium hirsutum
Gohir.A05G071200 Gossypium hirsutum
Gohir.A13G135150 Gossypium hirsutum
Gohir.D01G072700 Gossypium hirsutum
Gohir.D05G074100 Gossypium hirsutum
Gohir.D05G378100 Gossypium hirsutum
Gohir.D13G139500 Gossypium hirsutum
Gorai.002G095700 Gossypium raimondii
Gorai.009G075200 Gossypium raimondii
Gorai.009G445900 Gossypium raimondii
Gorai.013G156200 Gossypium raimondii
GSVIVG01030038001 Vitis vinifera
GSVIVG01037270001 Vitis vinifera
HanXRQChr03g0075301 Helianthus annuus
HanXRQChr05g0153341 Helianthus annuus
HanXRQChr08g0230701 Helianthus annuus
HanXRQChr13g0408031 Helianthus annuus
HanXRQChr14g0432241 Helianthus annuus
Haze_09778 Corylus avellana
Haze_23227 Corylus avellana
Hma1.2p1_0036F.1_g022800 Hydrangea macrophylla
Hma1.2p1_0129F.1_g060180 Hydrangea macrophylla
Hma1.2p1_0133F.1_g061270 Hydrangea macrophylla
Hma1.2p1_1199F.1_g266430 Hydrangea macrophylla
HPP92_009574 Vanilla planifolia
Lalb_Chr00c48g0412781 Lupinus albus
Lalb_Chr04g0248041 Lupinus albus
Lalb_Chr10g0106281 Lupinus albus
Lalb_Chr10g0107281 Lupinus albus
Lalb_Chr15g0081901 Lupinus albus
Lalb_Chr17g0347941 Lupinus albus
Lj1C284G6 Lonicera japonica
Lj1P884T27 Lonicera japonica
Lj6g0006256 Lotus japonicus
Lj6g0026042 Lotus japonicus
Lj8P175T44 Lonicera japonica
LjContig00272g0008208 Lotus japonicus
Lsat_1_v5_gn_0_15241 Lactuca sativa
Lsat_1_v5_gn_2_32040 Lactuca sativa
Lsat_1_v5_gn_5_7741 Lactuca sativa
Lsat_1_v5_gn_9_104921 Lactuca sativa
Manes.01G179000 Manihot esculenta
Manes.02G139700 Manihot esculenta
Manes.03G137404 Manihot esculenta
Manes.15G064100 Manihot esculenta
MBI13_g27801_MAGBIO Magnolia biondii
MBI16_g11548_MAGBIO Magnolia biondii
MBI19_g06161_MAGBIO Magnolia biondii
MBI19_g42626_MAGBIO Magnolia biondii
MBI19_g42627_MAGBIO Magnolia biondii
MD03G1166500 Malus domestica
MD03G1189600 Malus domestica
MD11G1205900 Malus domestica
Medtr3g055960 Medicago truncatula
Medtr5g089720 Medicago truncatula
Medtr5g094340 Medicago truncatula
MELO3C014140.2 Cucumis melo
MELO3C015121.2 Cucumis melo
MELO3C024896.2 Cucumis melo
Migut.D00658 Erythranthe guttata
Migut.M00021 Erythranthe guttata
Migut.M01684 Erythranthe guttata
MSTRG.14929 Avicennia marina
MSTRG.18459 Avicennia marina
MSTRG.6977 Avicennia marina
Nitab4.5_0000441g0210 Nicotiana tabacum
Nitab4.5_0000461g0010 Nicotiana tabacum
Nitab4.5_0000461g0020 Nicotiana tabacum
Nitab4.5_0000730g0060 Nicotiana tabacum
Nitab4.5_0001167g0090 Nicotiana tabacum
Nitab4.5_0001500g0060 Nicotiana tabacum
Nitab4.5_0003869g0030 Nicotiana tabacum
Nitab4.5_0008166g0020 Nicotiana tabacum
Nitab4.5_0008232g0040 Nicotiana tabacum
Nitab4.5_0008886g0020 Nicotiana tabacum
Nn1g02993 Nelumbo nucifera
Nn1g03261 Nelumbo nucifera
Nn2g14820 Nelumbo nucifera
Nn3g19240 Nelumbo nucifera
Nn7g36699 Nelumbo nucifera
Nn7g36700 Nelumbo nucifera
Nn7g36701 Nelumbo nucifera
Oeu001495.1 Olea europaea
Oeu036907.1 Olea europaea
Oeu054323.1 Olea europaea
Os01g0953500 Oryza sativa ssp. japonica
Os03g0194100 Oryza sativa ssp. japonica
Os07g0585000 Oryza sativa ssp. japonica
Peaxi162Scf00004g00455 Petunia axillaris
Peaxi162Scf00285g00922 Petunia axillaris
Peaxi162Scf00955g00322 Petunia axillaris
Peaxi162Scf02035g00005 Petunia axillaris
PGR083G0695 Punica granatum
PGR102G3051 Punica granatum
PGSC0003DMG400006158 Solanum tuberosum
PGSC0003DMG400009452 Solanum tuberosum
PGSC0003DMG400022291 Solanum tuberosum
Phvul.006G030900 Phaseolus vulgaris
Phvul.006G052800 Phaseolus vulgaris
Phvul.008G200800 Phaseolus vulgaris
Phvul.008G274800 Phaseolus vulgaris
Potri.001G275800 Populus trichocarpa
Potri.001G361100 Populus trichocarpa
Potri.009G070400 Populus trichocarpa
Potri.011G088400 Populus trichocarpa
Prupe.4G231700 Prunus persica
Prupe.4G267000 Prunus persica
Psat0s133g0040 Pisum sativum
Psat3g028760 Pisum sativum
Psat5g171240 Pisum sativum
Psat5g181200 Pisum sativum
PSO339G5094 Papaver somniferum
PSO384G1345 Papaver somniferum
PSO541G3597 Papaver somniferum
PSO675G7107 Papaver somniferum
QL01p017218 Quercus lobata
QL08p005932 Quercus lobata
RcHm_v2.0_Chr5g0042441 Rosa chinensis
RcHm_v2.0_Chr5g0050621 Rosa chinensis
Rhsim04G0015400 Rhododendron simsii
Rhsim06G0173500 Rhododendron simsii
Rhsim06G0226100 Rhododendron simsii
Rhsim13G0210500 Rhododendron simsii
Sabra09G0053300 Salix brachista
Sabra11G0074400 Salix brachista
Sabra11G0080000 Salix brachista
Sabra16G0170100 Salix brachista
Sabra16G0238100 Salix brachista
SalBow8G4390 Salvia bowleyana
Sc03g0008040 Simmondsia chinensis
Sc16g0003530 Simmondsia chinensis
Sc16g0011080 Simmondsia chinensis
Sed0000620 Sechium edule
Sed0003704 Sechium edule
Sed0009418 Sechium edule
Sed0010425 Sechium edule
Sed0026855 Sechium edule
SEGI_15344 Sequoiadendron giganteum
SEGI_15819 Sequoiadendron giganteum
SEGI_36403 Sequoiadendron giganteum
SGA_v2.0_scaffold168G38526 Striga asiatica
SGA_v2.0_scaffold171G38894 Striga asiatica
SGA_v2.0_scaffold29G12251 Striga asiatica
SGA_v2.0_scaffold8G04547 Striga asiatica
SHI26497 Sapria himalayana
SMO351G0645 Selaginella moellendorffii
SMO367G0425 Selaginella moellendorffii
Solyc07g048040.1 Solanum lycopersicum
Solyc07g065220.3 Solanum lycopersicum
Solyc07g065230.1 Solanum lycopersicum
Solyc11g064840.1 Solanum lycopersicum
Sopen07g024460 Solanum pennellii
Sopen07g033440 Solanum pennellii
Sopen11g024480 Solanum pennellii
Sp1g37380 Schrenkiella parvula
Sp6g17420 Schrenkiella parvula
Sp6g31340 Schrenkiella parvula
TAR623G1209 Trochodendron aralioides
TAR623G1257 Trochodendron aralioides
TAR624G0272 Trochodendron aralioides
TAR626G0057 Trochodendron aralioides
TAR629G2398 Trochodendron aralioides
TAR631G0002 Trochodendron aralioides
TAR633G0245 Trochodendron aralioides
TAR636G3555 Trochodendron aralioides
THA.LOC104799124 Tarenaya hassleriana
THA.LOC104811649 Tarenaya hassleriana
THA.LOC104817835 Tarenaya hassleriana
Thecc.07G023500 Theobroma cacao
Thecc.09G249000 Theobroma cacao
Thhalv10011530m.g Eutrema salsugineum
Thhalv10013714m.g Eutrema salsugineum
Thhalv10013849m.g Eutrema salsugineum
TPR.G19345 Trifolium pratense
TPR.G1945 Trifolium pratense
TPR.G31720 Trifolium pratense
TPR.G8481 Trifolium pratense
TWI38G0119 Tripterygium wilfordii
TWI38G0977 Tripterygium wilfordii
TWI39G1252 Tripterygium wilfordii
unitig_747.g21646 Utricularia gibba
vmacro09675 Vaccinium macrocarpon
vmacro11565 Vaccinium macrocarpon
vmacro12111 Vaccinium macrocarpon
VMungo0540G0057 Vigna mungo
VMungo0540G2077 Vigna mungo
VMungo0647G0245 Vigna mungo
VMungo0647G1843 Vigna mungo
Zm00001eb008270 Zea mays
Zm00001eb008290 Zea mays
Zm00001eb107970 Zea mays
Zm00001eb276350 Zea mays
Zm00001eb283850 Zea mays
Zm00001eb285250 Zea mays
Zm00001eb325820 Zea mays
Zm00001eb362790 Zea mays
Zm00001eb393890 Zea mays
Zm00001eb401160 Zea mays

User provided reference genes

Program Settings