Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p41450 Brassica napus
A02p29560 Brassica napus
A05p11670 Brassica napus
A05p43670 Brassica napus
A10p21640 Brassica napus
Aa31LG5G14170 Aethionema arabicum
Aa31LG9G13800 Aethionema arabicum
Aa31LG9G6920 Aethionema arabicum
Actinidia05666 Actinidia chinensis
Actinidia06209 Actinidia chinensis
Actinidia07965 Actinidia chinensis
Actinidia23666 Actinidia chinensis
Ah.05g168750 Amaranthus hybridus
AL3G13450 Arabidopsis lyrata
AL4G29710 Arabidopsis lyrata
AL6G28900 Arabidopsis lyrata
AL8G12540 Arabidopsis lyrata
Aqoxy1G02239 Aquilegia oxysepala
Aqoxy2G00010 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6Y8JYR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BECN34 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KEU6X6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N5SFMF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PM2MNG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WG7TRG Arachis hypogaea
AT2G33880 Arabidopsis thaliana
AT3G03660 Arabidopsis thaliana
AT5G17810 Arabidopsis thaliana
AT5G45980 Arabidopsis thaliana
AT5G46010 Arabidopsis thaliana
ATR0068G096 Amborella trichopoda
ATR0602G176 Amborella trichopoda
Atru.chr10.1753 Acer truncatum
Atru.chr2.1548 Acer truncatum
AUR62014909 Chenopodium quinoa
AUR62031114 Chenopodium quinoa
AUR62042276 Chenopodium quinoa
AUR62043402 Chenopodium quinoa
BcaB01g03911 Brassica carinata
BcaB01g03912 Brassica carinata
BcaB02g10604 Brassica carinata
BcaB05g23278 Brassica carinata
BcaB08g36741 Brassica carinata
BcaC01g05817 Brassica carinata
BcaC02g11466 Brassica carinata
BcaC03g13544 Brassica carinata
BcaC03g15033 Brassica carinata
BcaC03g16817 Brassica carinata
BcaC05g30260 Brassica carinata
BcaC09g47725 Brassica carinata
BcaNung07309 Brassica carinata
BNapus_Darmor_BZH_scaffold_78p00260 Brassica napus
BolC1t05818H Brassica oleracea
BolC2t06843H Brassica oleracea
BolC2t07868H Brassica oleracea
BolC2t08655H Brassica oleracea
BolC2t10738H Brassica oleracea
BolC3t14594H Brassica oleracea
BolC4t23089H Brassica oleracea
BolC5t34988H Brassica oleracea
BolC9t58772H Brassica oleracea
BraA01t04569Z Brassica rapa
BraA02t05410Z Brassica rapa
BraA02t07981Z Brassica rapa
BraA03t11154Z Brassica rapa
BraA05t20114Z Brassica rapa
BraA05t23106Z Brassica rapa
BraA10t44226Z Brassica rapa
C02p09360 Brassica napus
C02p25820 Brassica napus
C02p46900 Brassica napus
C03p22100 Brassica napus
C04p15130 Brassica napus
C05p63250 Brassica napus
C09p59310 Brassica napus
CAN.G1429.1 Capsicum annuum
CAN.G79.74 Capsicum annuum
CANSAT35G1097 Cannabis sativa
CANSAT78G1524 Cannabis sativa
CARHR077710 Cardamine hirsuta
CARHR128040 Cardamine hirsuta
CARHR175930 Cardamine hirsuta
CARHR175940 Cardamine hirsuta
CARHR195360 Cardamine hirsuta
Carub.0003s0282 Capsella rubella
Carub.0004s1559 Capsella rubella
Carub.0006s1604 Capsella rubella
Carub.0008s0194 Capsella rubella
Ca_00405_v3 Cicer arietinum L.
Ca_03450_v3 Cicer arietinum L.
Ca_04460_v3 Cicer arietinum L.
Ca_18616_v3 Cicer arietinum L.
Cc00_g05100 Coffea canephora
Cc02_g14220 Coffea canephora
CDE08G0715 Ceratophyllum demersum
CDE09G0339 Ceratophyllum demersum
CDE10G0232 Ceratophyllum demersum
CDE10G0542 Ceratophyllum demersum
Ciclev10015562m.g Citrus clementina
Ciclev10021682m.g Citrus clementina
CiPaw.09G065800 Carya illinoinensis
CiPaw.09G165900 Carya illinoinensis
CiPaw.10G054300 Carya illinoinensis
ClCG01G023420 Citrullus lanatus
ClCG10G017070 Citrullus lanatus
COL.COLO4_20076 Corchorus olitorius
COL.COLO4_31392 Corchorus olitorius
Cpa.g.sc7.12 Carica papaya
Cpa.g.sc73.3 Carica papaya
CsaV3_3G039320 Cucumis sativus L.
CsaV3_6G050540 Cucumis sativus L.
CSS0010094 Camellia sinensis var. sinensis
CSS0013714 Camellia sinensis var. sinensis
DCAR_004032 Daucus carota
DCAR_006582 Daucus carota
DCAR_007980 Daucus carota
DCAR_016960 Daucus carota
DCAR_020646 Daucus carota
DCAR_028033 Daucus carota
Dinv14569 Davidia involucrata
Dinv37024 Davidia involucrata
Dinv40624 Davidia involucrata
Duzib128G0772 Durio zibethinus
Duzib160G0055 Durio zibethinus
Duzib177G0231 Durio zibethinus
Duzib192G1052 Durio zibethinus
Duzib235G1081 Durio zibethinus
ECA234G2613 Erigeron canadensis
ECA248G1614 Erigeron canadensis
EL10Ac5g11720 Beta vulgaris
EL10Ac8g20466 Beta vulgaris
Eucgr.A02149 Eucalyptus grandis
Eucgr.D00577 Eucalyptus grandis
FAN11G0091 Fragaria x ananassa
FAN11G3677 Fragaria x ananassa
FAN16G0959 Fragaria x ananassa
FAN16G3742 Fragaria x ananassa
FAN19G0191 Fragaria x ananassa
FAN21G0880 Fragaria x ananassa
FAN21G3850 Fragaria x ananassa
FAN23G2625 Fragaria x ananassa
FAN25G0323 Fragaria x ananassa
FAN25G1426 Fragaria x ananassa
FAN28G2385 Fragaria x ananassa
FvH4_1g29830 Fragaria vesca
FvH4_3g08310 Fragaria vesca
FvH4_3g10130 Fragaria vesca
Glyma.03G007600 Glycine max
Glyma.07G203000 Glycine max
Glyma.10G069700 Glycine max
Glyma.13G152644 Glycine max
Glyma.13G172700 Glycine max
Glyma.19G118400 Glycine max
Gohir.A05G157800 Gossypium hirsutum
Gohir.A10G029000 Gossypium hirsutum
Gohir.A11G300200 Gossypium hirsutum
Gohir.A13G160800 Gossypium hirsutum
Gohir.D05G160500 Gossypium hirsutum
Gohir.D10G029500 Gossypium hirsutum
Gohir.D11G315100 Gossypium hirsutum
Gohir.D13G166100 Gossypium hirsutum
Gorai.007G346300 Gossypium raimondii
Gorai.009G165700 Gossypium raimondii
Gorai.011G031300 Gossypium raimondii
Gorai.013G196400 Gossypium raimondii
GSVIVG01021144001 Vitis vinifera
GSVIVG01029942001 Vitis vinifera
HanXRQChr00c0167g0572241 Helianthus annuus
HanXRQChr11g0330491 Helianthus annuus
HanXRQChr16g0518541 Helianthus annuus
HanXRQChr17g0561751 Helianthus annuus
Haze_06328 Corylus avellana
Haze_20396 Corylus avellana
Hma1.2p1_0155F.1_g068620 Hydrangea macrophylla
HPP92_014366 Vanilla planifolia
HPP92_023294 Vanilla planifolia
Lalb_Chr02g0157471 Lupinus albus
Lalb_Chr02g0157481 Lupinus albus
Lalb_Chr09g0327911 Lupinus albus
Lalb_Chr09g0327921 Lupinus albus
Lalb_Chr14g0364921 Lupinus albus
Lalb_Chr16g0384151 Lupinus albus
Lalb_Chr16g0384161 Lupinus albus
Lalb_Chr18g0059291 Lupinus albus
Lalb_Chr22g0358571 Lupinus albus
Lj1A1070T35 Lonicera japonica
Lj1g0027637 Lotus japonicus
Lj2g0009529 Lotus japonicus
Lj4g0025099 Lotus japonicus
Lj6g0021226 Lotus japonicus
Lsat_1_v5_gn_4_51320 Lactuca sativa
Lsat_1_v5_gn_8_109341 Lactuca sativa
Manes.08G151900 Manihot esculenta
Manes.09G136200 Manihot esculenta
Manes.16G034000 Manihot esculenta
Manes.17G051300 Manihot esculenta
MBI13_g14160_MAGBIO Magnolia biondii
MD05G1307400 Malus domestica
MD10G1286500 Malus domestica
MD12G1012600 Malus domestica
MD14G1010400 Malus domestica
Medtr2g015000 Medicago truncatula
Medtr3g462480 Medicago truncatula
Medtr4g088070 Medicago truncatula
Medtr4g088080 Medicago truncatula
Medtr6g027390 Medicago truncatula
Medtr7g086940 Medicago truncatula
MELO3C007244.2 Cucumis melo
MELO3C009677.2 Cucumis melo
Migut.J01603 Erythranthe guttata
Migut.K00205 Erythranthe guttata
Migut.M01086 Erythranthe guttata
MSTRG.6255 Avicennia marina
MSTRG.7376 Avicennia marina
Nitab4.5_0000035g0300 Nicotiana tabacum
Nitab4.5_0000376g0020 Nicotiana tabacum
Nitab4.5_0001733g0010 Nicotiana tabacum
Nn1g04282 Nelumbo nucifera
Nn1g06358 Nelumbo nucifera
Nn2g14576 Nelumbo nucifera
Oeu001093.1 Olea europaea
Oeu029350.1 Olea europaea
Oeu032943.1 Olea europaea
Oeu043086.1 Olea europaea
Oeu044211.1 Olea europaea
Oeu052770.1 Olea europaea
Oeu056527.1 Olea europaea
Os01g0667400 Oryza sativa ssp. japonica
Os03g0325600 Oryza sativa ssp. japonica
Os05g0564500 Oryza sativa ssp. japonica
Os06g0550442 Oryza sativa ssp. japonica
Os07g0533201 Oryza sativa ssp. japonica
Os07g0684900 Oryza sativa ssp. japonica
Os08g0242400 Oryza sativa ssp. japonica
Peaxi162Scf00042g00077 Petunia axillaris
Peaxi162Scf00126g00418 Petunia axillaris
Peaxi162Scf00966g00411 Petunia axillaris
PGR042G0754 Punica granatum
PGR042G2341 Punica granatum
PGSC0003DMG400010725 Solanum tuberosum
PGSC0003DMG400027030 Solanum tuberosum
Phvul.001G106700 Phaseolus vulgaris
Phvul.003G073400 Phaseolus vulgaris
Phvul.004G053700 Phaseolus vulgaris
Phvul.006G179900 Phaseolus vulgaris
Potri.004G051600 Populus trichocarpa
Potri.011G061400 Populus trichocarpa
Potri.013G066900 Populus trichocarpa
Potri.019G040800 Populus trichocarpa
Prupe.4G055300 Prunus persica
Prupe.7G016600 Prunus persica
Psat1g086680 Pisum sativum
Psat1g201160 Pisum sativum
Psat3g085840 Pisum sativum
Psat7g117160 Pisum sativum
PSO339G0320 Papaver somniferum
PSO384G4195 Papaver somniferum
PSO541G2659 Papaver somniferum
PSO675G4366 Papaver somniferum
QL05p043708 Quercus lobata
QL07p016887 Quercus lobata
RcHm_v2.0_Chr3g0495921 Rosa chinensis
RcHm_v2.0_Chr5g0009691 Rosa chinensis
Rhsim04G0151500 Rhododendron simsii
Rhsim13G0181900 Rhododendron simsii
Sabra04G0032400 Salix brachista
Sabra11G0041800 Salix brachista
Sabra11G0043400 Salix brachista
Sabra13G0058400 Salix brachista
Sabra19G0051000 Salix brachista
SalBow1G4507 Salvia bowleyana
SalBow2G1949 Salvia bowleyana
SalBow6G3430 Salvia bowleyana
SalBow6G3595 Salvia bowleyana
SalBow7G0584 Salvia bowleyana
SalBow7G1268 Salvia bowleyana
SalBow7G3338 Salvia bowleyana
SalBow8G2504 Salvia bowleyana
Sc05g0007320 Simmondsia chinensis
Sc07g0007590 Simmondsia chinensis
Sed0001692 Sechium edule
Sed0005013 Sechium edule
Sed0015574 Sechium edule
SEGI_15513 Sequoiadendron giganteum
SEGI_17071 Sequoiadendron giganteum
SEGI_21669 Sequoiadendron giganteum
SEGI_32698 Sequoiadendron giganteum
SEGI_33146 Sequoiadendron giganteum
SGA_v2.0_scaffold12G06093 Striga asiatica
SGA_v2.0_scaffold309G48154 Striga asiatica
SGA_v2.0_scaffold66G22368 Striga asiatica
SHI28462 Sapria himalayana
Solyc02g077390.2 Solanum lycopersicum
Solyc06g072890.3 Solanum lycopersicum
Sopen02g022290 Solanum pennellii
Sopen06g029270 Solanum pennellii
Sp2g10860 Schrenkiella parvula
Sp3g02640 Schrenkiella parvula
Sp4g16310 Schrenkiella parvula
Sp6g26440 Schrenkiella parvula
TAR369G0650 Trochodendron aralioides
TAR623G1266 Trochodendron aralioides
TAR626G1914 Trochodendron aralioides
TAR627G0682 Trochodendron aralioides
TAR629G3060 Trochodendron aralioides
THA.LOC104798411 Tarenaya hassleriana
THA.LOC104803115 Tarenaya hassleriana
THA.LOC104812625 Tarenaya hassleriana
THA.LOC104814236 Tarenaya hassleriana
THA.LOC104821150 Tarenaya hassleriana
Thecc.05G240500 Theobroma cacao
Thecc.06G178000 Theobroma cacao
Thhalv10001099m.g Eutrema salsugineum
Thhalv10015651m.g Eutrema salsugineum
Thhalv10016784m.g Eutrema salsugineum
Thhalv10022222m.g Eutrema salsugineum
TPR.G10651 Trifolium pratense
TPR.G10666 Trifolium pratense
TPR.G11704 Trifolium pratense
TPR.G15874 Trifolium pratense
TPR.G27874 Trifolium pratense
TPR.G3901 Trifolium pratense
TWI34G1130 Tripterygium wilfordii
TWI38G2016 Tripterygium wilfordii
unitig_52.g17612 Utricularia gibba
unitig_899.g15240 Utricularia gibba
vmacro03893 Vaccinium macrocarpon
vmacro08697 Vaccinium macrocarpon
VMungo0251G1112 Vigna mungo
VMungo0251G3490 Vigna mungo
VMungo0464G0450 Vigna mungo
VMungo0540G0605 Vigna mungo
VMungo1309G3153 Vigna mungo
VMungo1383G2093 Vigna mungo
Zm00001eb015500 Zea mays
Zm00001eb157360 Zea mays
Zm00001eb180280 Zea mays
Zm00001eb295920 Zea mays
Zm00001eb330990 Zea mays
Zm00001eb359810 Zea mays
Zm00001eb395430 Zea mays
Zm00001eb414580 Zea mays
Zm00001eb429640 Zea mays

User provided reference genes

Program Settings