Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p28180 Brassica napus
A08p07390 Brassica napus
A09p18550 Brassica napus
A10p31370 Brassica napus
Aa31LG11G5870 Aethionema arabicum
Aa31LG2G10980 Aethionema arabicum
Aa31LG6G8770 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3217 Anthoceros agrestis
Actinidia06466 Actinidia chinensis
Actinidia16113 Actinidia chinensis
Actinidia26159 Actinidia chinensis
Actinidia34061 Actinidia chinensis
Actinidia39018 Actinidia chinensis
Ah.01g021660 Amaranthus hybridus
Ah.04g162550 Amaranthus hybridus
Ah.05g178380 Amaranthus hybridus
AL1G50350 Arabidopsis lyrata
AL2G18070 Arabidopsis lyrata
AL6G14500 Arabidopsis lyrata
AL6G41210 Arabidopsis lyrata
Aqoxy2G03360 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.8YM8YZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.900H0A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AY0SR4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BCF1Q0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ICMC1Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z0L96X Arachis hypogaea
AT1G35490 Arabidopsis thaliana
AT1G58110 Arabidopsis thaliana
AT4G06598 Arabidopsis thaliana
AT5G04840 Arabidopsis thaliana
ATR0661G486 Amborella trichopoda
ATR0772G184 Amborella trichopoda
ATR1136G107 Amborella trichopoda
Atru.chr12.1073 Acer truncatum
Atru.chr6.697 Acer truncatum
AUR62004622 Chenopodium quinoa
AUR62011669 Chenopodium quinoa
AUR62016492 Chenopodium quinoa
AUR62023517 Chenopodium quinoa
AUR62034166 Chenopodium quinoa
AUR62034488 Chenopodium quinoa
AUR62040515 Chenopodium quinoa
BcaB04g17747 Brassica carinata
BcaB04g20186 Brassica carinata
BcaC04g22117 Brassica carinata
BcaC06g32191 Brassica carinata
BcaC07g37434 Brassica carinata
BcaC09g49511 Brassica carinata
BolC1t03533H Brassica oleracea
BolC8t47756H Brassica oleracea
BolC9t55235H Brassica oleracea
BolC9t59949H Brassica oleracea
BraA01t02948Z Brassica rapa
BraA08t32757Z Brassica rapa
BraA09t37481Z Brassica rapa
BraA10t45183Z Brassica rapa
C01p35740 Brassica napus
C08p09100 Brassica napus
C09p23160 Brassica napus
C09p72040 Brassica napus
CAN.G143.42 Capsicum annuum
CAN.G544.4 Capsicum annuum
CAN.G798.33 Capsicum annuum
CANSAT11G0170 Cannabis sativa
CANSAT56G3891 Cannabis sativa
CARHR034250 Cardamine hirsuta
CARHR053940 Cardamine hirsuta
CARHR208440 Cardamine hirsuta
CARHR287320 Cardamine hirsuta
Carub.0001s3309 Capsella rubella
Carub.0002s0651 Capsella rubella
Carub.0006s0372 Capsella rubella
Carub.0006s2629 Capsella rubella
Ca_13956_v3 Cicer arietinum L.
Ca_17835_v3 Cicer arietinum L.
Cc02_g09360 Coffea canephora
Cc02_g22880 Coffea canephora
Cc10_g10280 Coffea canephora
CDE02G2962 Ceratophyllum demersum
CDE06G0681 Ceratophyllum demersum
CDE08G1081 Ceratophyllum demersum
CDE08G1625 Ceratophyllum demersum
Cfa005489 Carpinus fangiana
Cfa010522 Carpinus fangiana
Ciclev10001528m.g Citrus clementina
Ciclev10016047m.g Citrus clementina
CiPaw.03G020100 Carya illinoinensis
CiPaw.05G050800 Carya illinoinensis
CiPaw.06G144000 Carya illinoinensis
CiPaw.13G043900 Carya illinoinensis
ClCG05G009440 Citrullus lanatus
ClCG05G021960 Citrullus lanatus
ClCG11G013420 Citrullus lanatus
COL.COLO4_11754 Corchorus olitorius
Cpa.g.c30412.2 Carica papaya
Cpa.g.sc33.133 Carica papaya
Cpa.g.sc38.33 Carica papaya
Cpa.g.sc38.34 Carica papaya
CsaV3_3G019270 Cucumis sativus L.
CsaV3_5G029950 Cucumis sativus L.
CsaV3_5G035190 Cucumis sativus L.
CSS0002594 Camellia sinensis var. sinensis
CSS0005276 Camellia sinensis var. sinensis
CSS0007772 Camellia sinensis var. sinensis
CSS0018654 Camellia sinensis var. sinensis
CSS0018911 Camellia sinensis var. sinensis
CSS0029941 Camellia sinensis var. sinensis
CSS0044781 Camellia sinensis var. sinensis
CSS0047358 Camellia sinensis var. sinensis
DCAR_001450 Daucus carota
DCAR_001831 Daucus carota
DCAR_006686 Daucus carota
DCAR_012539 Daucus carota
DCAR_029264 Daucus carota
Dinv08577 Davidia involucrata
Dinv08583 Davidia involucrata
Dinv19392 Davidia involucrata
Dinv41740 Davidia involucrata
Duzib052G0052 Durio zibethinus
Duzib132G0781 Durio zibethinus
Duzib248G0928 Durio zibethinus
ECA236G0104 Erigeron canadensis
ECA238G0804 Erigeron canadensis
ECA240G0453 Erigeron canadensis
EL10Ac1g00111 Beta vulgaris
EL10Ac4g07902 Beta vulgaris
EL10Ac9g22036 Beta vulgaris
Eucgr.G00399 Eucalyptus grandis
Eucgr.I02749 Eucalyptus grandis
Eucgr.J00290 Eucalyptus grandis
FAN13G3267 Fragaria x ananassa
FAN18G1669 Fragaria x ananassa
FvH4_5g28730 Fragaria vesca
Glyma.05G168100 Glycine max
Glyma.08G126500 Glycine max
Gohir.A03G192700 Gossypium hirsutum
Gohir.A04G121926 Gossypium hirsutum
Gohir.A12G027400 Gossypium hirsutum
Gohir.A13G036500 Gossypium hirsutum
Gohir.D02G213700 Gossypium hirsutum
Gohir.D04G163200 Gossypium hirsutum
Gohir.D04G163400 Gossypium hirsutum
Gohir.D12G026800 Gossypium hirsutum
Gohir.D13G034800 Gossypium hirsutum
Gorai.005G241600 Gossypium raimondii
Gorai.008G027200 Gossypium raimondii
Gorai.012G151300 Gossypium raimondii
Gorai.013G039300 Gossypium raimondii
GSVIVG01001783001 Vitis vinifera
GSVIVG01023292001 Vitis vinifera
GSVIVG01034617001 Vitis vinifera
HanXRQChr02g0053591 Helianthus annuus
HanXRQChr03g0065261 Helianthus annuus
HanXRQChr06g0181281 Helianthus annuus
HanXRQChr17g0551161 Helianthus annuus
Haze_01816 Corylus avellana
Haze_03462 Corylus avellana
Haze_13897 Corylus avellana
Hma1.2p1_0926F.1_g237550 Hydrangea macrophylla
Hma1.2p1_1108F.1_g257810 Hydrangea macrophylla
Hma1.2p1_1928F.1_g307820 Hydrangea macrophylla
HPP92_004469 Vanilla planifolia
HPP92_004486 Vanilla planifolia
HPP92_013376 Vanilla planifolia
HPP92_024409 Vanilla planifolia
Hund06808 Selenicereus undatus
Hund12943 Selenicereus undatus
Hund22265 Selenicereus undatus
Lalb_Chr07g0185821 Lupinus albus
Lalb_Chr12g0204531 Lupinus albus
Lalb_Chr13g0295621 Lupinus albus
Lalb_Chr13g0295631 Lupinus albus
Lalb_Chr15g0090721 Lupinus albus
Lj2A35T44 Lonicera japonica
Lj3g0007989 Lotus japonicus
Lj4g0019684 Lotus japonicus
Lj5A255T86 Lonicera japonica
Lj9C301T8 Lonicera japonica
Lsat_1_v5_gn_2_105921 Lactuca sativa
Lsat_1_v5_gn_5_105880 Lactuca sativa
Lsat_1_v5_gn_6_24641 Lactuca sativa
Lsat_1_v5_gn_7_79240 Lactuca sativa
Lsat_1_v5_gn_9_120880 Lactuca sativa
Manes.02G083200 Manihot esculenta
Manes.07G020400 Manihot esculenta
Manes.07G020850 Manihot esculenta
Manes.10G123800 Manihot esculenta
Mapoly0019s0040 Marchantia polymorpha
MBI03_g13496_MAGBIO Magnolia biondii
MBI04_g14398_MAGBIO Magnolia biondii
MBI06_g32170_MAGBIO Magnolia biondii
MBI11_g13556_MAGBIO Magnolia biondii
MBI11_g44962_MAGBIO Magnolia biondii
MD08G1238800 Malus domestica
MD15G1430600 Malus domestica
Medtr3g005230 Medicago truncatula
Medtr8g088650 Medicago truncatula
MELO3C011839.2 Cucumis melo
MELO3C012332.2 Cucumis melo
MELO3C017866.2 Cucumis melo
MELO3C019429.2 Cucumis melo
MELO3C027203.2 Cucumis melo
Migut.B00807 Erythranthe guttata
Migut.C01294 Erythranthe guttata
Migut.F00844 Erythranthe guttata
Migut.N00836 Erythranthe guttata
MSTRG.1554 Avicennia marina
MSTRG.16506 Avicennia marina
MSTRG.5118 Avicennia marina
MSTRG.9031 Avicennia marina
Nitab4.5_0000365g0040 Nicotiana tabacum
Nitab4.5_0000548g0190 Nicotiana tabacum
Nitab4.5_0000667g0140 Nicotiana tabacum
Nitab4.5_0000667g0150 Nicotiana tabacum
Nitab4.5_0000948g0280 Nicotiana tabacum
Nitab4.5_0001781g0130 Nicotiana tabacum
Nitab4.5_0002698g0070 Nicotiana tabacum
Nitab4.5_0004437g0030 Nicotiana tabacum
Nitab4.5_0008098g0040 Nicotiana tabacum
Nitab4.5_0008098g0050 Nicotiana tabacum
Nitab4.5_0009812g0050 Nicotiana tabacum
Nitab4.5_0009933g0010 Nicotiana tabacum
Nitab4.5_0029272g0010 Nicotiana tabacum
Nn3g18937 Nelumbo nucifera
Nn6g34689 Nelumbo nucifera
Nn6g34691 Nelumbo nucifera
Oeu009250.1 Olea europaea
Oeu023417.1 Olea europaea
Oeu029412.1 Olea europaea
Oeu032112.1 Olea europaea
Oeu033274.1 Olea europaea
Oeu049833.1 Olea europaea
Oeu049834.1 Olea europaea
Oeu059183.1 Olea europaea
Os02g0538900 Oryza sativa ssp. japonica
Os11g0218000 Oryza sativa ssp. japonica
Os12g0194600 Oryza sativa ssp. japonica
Peaxi162Scf00003g03938 Petunia axillaris
Peaxi162Scf00011g00747 Petunia axillaris
Peaxi162Scf00120g01525 Petunia axillaris
Peaxi162Scf00152g01525 Petunia axillaris
Peaxi162Scf00391g00618 Petunia axillaris
Peaxi162Scf03393g00015 Petunia axillaris
PGR042G1770 Punica granatum
PGR044G0163 Punica granatum
PGR142G3237 Punica granatum
PGSC0003DMG400001999 Solanum tuberosum
PGSC0003DMG400009283 Solanum tuberosum
PGSC0003DMG401024930 Solanum tuberosum
Phvul.002G248500 Phaseolus vulgaris
Potri.003G014800 Populus trichocarpa
Potri.004G219100 Populus trichocarpa
Potri.008G018400 Populus trichocarpa
Potri.010G242800 Populus trichocarpa
Potri.015G147800 Populus trichocarpa
Prupe.1G575800 Prunus persica
Prupe.2G072200 Prunus persica
Psat1g003160 Pisum sativum
PSO017G7022 Papaver somniferum
PSO170G1283 Papaver somniferum
PSO170G4920 Papaver somniferum
PSO782G0466 Papaver somniferum
QL02p099840 Quercus lobata
QL04p047945 Quercus lobata
QL09p005240 Quercus lobata
RcHm_v2.0_Chr7g0220891 Rosa chinensis
Rhsim03G0095000 Rhododendron simsii
Rhsim03G0096000 Rhododendron simsii
Rhsim06G0113800 Rhododendron simsii
Rhsim07G0186900 Rhododendron simsii
Sabra01G0166200 Salix brachista
Sabra03G0007900 Salix brachista
Sabra08G0012000 Salix brachista
Sabra10G0189800 Salix brachista
SalBow3G3254 Salvia bowleyana
SalBow3G3660 Salvia bowleyana
SalBow7G2813 Salvia bowleyana
Sc07g0005000 Simmondsia chinensis
Sc09g0005080 Simmondsia chinensis
Sed0000104 Sechium edule
Sed0005533 Sechium edule
Sed0013466 Sechium edule
Sed0027900 Sechium edule
Sed0027953 Sechium edule
SEGI_34147 Sequoiadendron giganteum
SGA_v2.0_scaffold24G10578 Striga asiatica
SGA_v2.0_scaffold338G49225 Striga asiatica
SGA_v2.0_scaffold3574G54364 Striga asiatica
SGA_v2.0_scaffold92G28306 Striga asiatica
SMO203G0264 Selaginella moellendorffii
Solyc01g103873.1 Solanum lycopersicum
Solyc01g103875.1 Solanum lycopersicum
Solyc10g044830.1 Solanum lycopersicum
Solyc11g006490.2 Solanum lycopersicum
Solyc11g020950.3 Solanum lycopersicum
Sopen01g046250 Solanum pennellii
Sopen01g046280 Solanum pennellii
Sopen10g013590 Solanum pennellii
Sopen10g013600 Solanum pennellii
Sopen11g002380 Solanum pennellii
Sopen11g011090 Solanum pennellii
Sp1g30240 Schrenkiella parvula
Sp2g05460 Schrenkiella parvula
Sp2g05470 Schrenkiella parvula
Sp6g37990 Schrenkiella parvula
TAR381G1439 Trochodendron aralioides
TAR628G0141 Trochodendron aralioides
TAR636G1510 Trochodendron aralioides
THA.LOC104801421 Tarenaya hassleriana
THA.LOC104807120 Tarenaya hassleriana
THA.LOC104816456 Tarenaya hassleriana
THA.LOC104816474 Tarenaya hassleriana
THA.LOC104820215 Tarenaya hassleriana
THA.LOC104823694 Tarenaya hassleriana
Thecc.02G090500 Theobroma cacao
Thecc.10G117300 Theobroma cacao
Thhalv10001827m.g Eutrema salsugineum
Thhalv10014187m.g Eutrema salsugineum
Thhalv10023533m.g Eutrema salsugineum
Thhalv10023536m.g Eutrema salsugineum
TPR.G25523 Trifolium pratense
TPR.G38594 Trifolium pratense
TPR.G6809 Trifolium pratense
TWI14G0546 Tripterygium wilfordii
TWI23G0075 Tripterygium wilfordii
TWI59G0573 Tripterygium wilfordii
unitig_52.g17437 Utricularia gibba
unitig_578.g16345 Utricularia gibba
unitig_62.g23619 Utricularia gibba
unitig_747.g21555 Utricularia gibba
unitig_747.g21556 Utricularia gibba
unitig_8.g4531 Utricularia gibba
vmacro01735 Vaccinium macrocarpon
vmacro07272 Vaccinium macrocarpon
vmacro19874 Vaccinium macrocarpon
vmacro19875 Vaccinium macrocarpon
VMungo0251G2048 Vigna mungo
Zm00001eb138730 Zea mays
Zm00001eb169130 Zea mays
Zm00001eb181550 Zea mays
Zm00001eb243050 Zea mays
Zm00001eb264190 Zea mays

User provided reference genes

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