Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p06790 Brassica napus
A08p34170 Brassica napus
A09p18270 Brassica napus
A09p65180 Brassica napus
Aa31LG1G4750 Aethionema arabicum
Aa31LG2G10650 Aethionema arabicum
Actinidia10212 Actinidia chinensis
Actinidia11970 Actinidia chinensis
Actinidia32848 Actinidia chinensis
Actinidia36426 Actinidia chinensis
Ah.15g097370 Amaranthus hybridus
AL1G20830 Arabidopsis lyrata
AL2G17800 Arabidopsis lyrata
Aqoxy4G03183 Aquilegia oxysepala
Aqoxy6G02538 Aquilegia oxysepala
Aqoxy6G02539 Aquilegia oxysepala
Aqoxy6G02540 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.U15FS5 Arachis hypogaea
AT1G10140 Arabidopsis thaliana
AT1G58420 Arabidopsis thaliana
ATR0739G076 Amborella trichopoda
Atru.chr13.855 Acer truncatum
Atru.chr3.1040 Acer truncatum
Atru.chr5.2308 Acer truncatum
Atru.chr5.2309 Acer truncatum
AUR62034996 Chenopodium quinoa
AUR62037407 Chenopodium quinoa
BcaB08g37333 Brassica carinata
BcaB08g37335 Brassica carinata
BcaC04g22153 Brassica carinata
BcaC04g22156 Brassica carinata
BcaC05g24808 Brassica carinata
BcaC07g38557 Brassica carinata
BcaC07g41840 Brassica carinata
BcaC08g44979 Brassica carinata
BolC5t29578H Brassica oleracea
BolC8t48972H Brassica oleracea
BolC8t52445H Brassica oleracea
BolC9t55192H Brassica oleracea
BolC9t55194H Brassica oleracea
BraA06t23894Z Brassica rapa
BraA08t35329Z Brassica rapa
BraA09t37458Z Brassica rapa
BraA09t41861Z Brassica rapa
C05p08280 Brassica napus
C08p13420 Brassica napus
C08p49120 Brassica napus
C09p22750 Brassica napus
C09p22770 Brassica napus
CAN.G1075.50 Capsicum annuum
CAN.G1075.51 Capsicum annuum
CAN.G1239.2 Capsicum annuum
CAN.G975.10 Capsicum annuum
CANSAT01G1870 Cannabis sativa
CANSAT25G3829 Cannabis sativa
CARHR010240 Cardamine hirsuta
CARHR283980 Cardamine hirsuta
CARHR284110 Cardamine hirsuta
Carub.0001s0955 Capsella rubella
Carub.0002s0609 Capsella rubella
Ca_13199_v3 Cicer arietinum L.
Ca_15896_v3 Cicer arietinum L.
Ca_29874_v3 Cicer arietinum L.
Cc07_g07270 Coffea canephora
Cc10_g05130 Coffea canephora
CDE01G0401 Ceratophyllum demersum
CDE02G3522 Ceratophyllum demersum
CDE04G3712 Ceratophyllum demersum
CDE07G0224 Ceratophyllum demersum
Cfa004148 Carpinus fangiana
Cfa004707 Carpinus fangiana
Cfa013755 Carpinus fangiana
Ciclev10002716m.g Citrus clementina
Ciclev10026650m.g Citrus clementina
Ciclev10029578m.g Citrus clementina
Ciclev10029656m.g Citrus clementina
Ciclev10029661m.g Citrus clementina
Ciclev10029735m.g Citrus clementina
Ciclev10029877m.g Citrus clementina
Ciclev10029922m.g Citrus clementina
Ciclev10030063m.g Citrus clementina
Ciclev10030194m.g Citrus clementina
Ciclev10030311m.g Citrus clementina
CiPaw.01G002900 Carya illinoinensis
CiPaw.02G001600 Carya illinoinensis
CiPaw.05G020300 Carya illinoinensis
CiPaw.07G173200 Carya illinoinensis
CiPaw.08G051100 Carya illinoinensis
ClCG01G017710 Citrullus lanatus
ClCG08G016610 Citrullus lanatus
COL.COLO4_11600 Corchorus olitorius
COL.COLO4_32491 Corchorus olitorius
COL.COLO4_32492 Corchorus olitorius
Cpa.g.c26343.5 Carica papaya
Cpa.g.sc106.35 Carica papaya
Cpa.g.sc142.51 Carica papaya
CsaV3_2G026000 Cucumis sativus L.
CsaV3_6G044240 Cucumis sativus L.
CSS0026617 Camellia sinensis var. sinensis
DCAR_003516 Daucus carota
DCAR_007834 Daucus carota
DCAR_008863 Daucus carota
DCAR_009869 Daucus carota
DCAR_009870 Daucus carota
DCAR_010808 Daucus carota
DCAR_010809 Daucus carota
DCAR_012821 Daucus carota
DCAR_020054 Daucus carota
DCAR_020055 Daucus carota
DCAR_021946 Daucus carota
Dinv16071 Davidia involucrata
Dinv23033 Davidia involucrata
Dinv26948 Davidia involucrata
Dinv42246 Davidia involucrata
Dinv44941 Davidia involucrata
Duzib041G0206 Durio zibethinus
Duzib052G0328 Durio zibethinus
Duzib052G0412 Durio zibethinus
Duzib093G0976 Durio zibethinus
Duzib116G0259 Durio zibethinus
Duzib147G1417 Durio zibethinus
Duzib248G0396 Durio zibethinus
Duzib264G0605 Durio zibethinus
ECA232G0483 Erigeron canadensis
ECA232G1936 Erigeron canadensis
ECA232G2372 Erigeron canadensis
ECA232G4825 Erigeron canadensis
ECA247G3779 Erigeron canadensis
ECA248G0528 Erigeron canadensis
EL10Ac1g02360 Beta vulgaris
Eucgr.F00091 Eucalyptus grandis
Eucgr.F02232 Eucalyptus grandis
Eucgr.H02316 Eucalyptus grandis
Eucgr.I00688 Eucalyptus grandis
Eucgr.I00689 Eucalyptus grandis
Eucgr.I01030 Eucalyptus grandis
Eucgr.I01031 Eucalyptus grandis
Eucgr.L02595 Eucalyptus grandis
FAN19G1457 Fragaria x ananassa
FAN20G2517 Fragaria x ananassa
FAN23G2360 Fragaria x ananassa
FAN24G1511 Fragaria x ananassa
FAN26G2644 Fragaria x ananassa
FvH4_1g17980 Fragaria vesca
FvH4_2g03511 Fragaria vesca
FvH4_2g03520 Fragaria vesca
FvH4_2g32830 Fragaria vesca
Glyma.04G046800 Glycine max
Glyma.05G107000 Glycine max
Glyma.06G047600 Glycine max
Glyma.14G089054 Glycine max
Glyma.17G159800 Glycine max
Glyma.17G233700 Glycine max
Gohir.A01G123300 Gossypium hirsutum
Gohir.A02G150400 Gossypium hirsutum
Gohir.A03G181250 Gossypium hirsutum
Gohir.A05G211200 Gossypium hirsutum
Gohir.A05G263200 Gossypium hirsutum
Gohir.A11G213300 Gossypium hirsutum
Gohir.A12G018801 Gossypium hirsutum
Gohir.D01G110900 Gossypium hirsutum
Gohir.D02G203218 Gossypium hirsutum
Gohir.D03G029900 Gossypium hirsutum
Gohir.D05G214500 Gossypium hirsutum
Gohir.D05G265500 Gossypium hirsutum
Gohir.D11G209900 Gossypium hirsutum
Gohir.D12G019300 Gossypium hirsutum
Gorai.002G135700 Gossypium raimondii
Gorai.003G031600 Gossypium raimondii
Gorai.005G230100 Gossypium raimondii
Gorai.007G225100 Gossypium raimondii
Gorai.008G019600 Gossypium raimondii
Gorai.009G221200 Gossypium raimondii
Gorai.009G277300 Gossypium raimondii
GSVIVG01009317001 Vitis vinifera
HanXRQChr10g0292131 Helianthus annuus
Haze_10311 Corylus avellana
Haze_15187 Corylus avellana
Hma1.2p1_1170F.1_g263360 Hydrangea macrophylla
HPP92_000897 Vanilla planifolia
HPP92_007706 Vanilla planifolia
HPP92_018768 Vanilla planifolia
HPP92_019629 Vanilla planifolia
HPP92_023763 Vanilla planifolia
Lalb_Chr08g0245301 Lupinus albus
Lalb_Chr14g0368111 Lupinus albus
Lalb_Chr22g0355731 Lupinus albus
Lalb_Chr23g0267571 Lupinus albus
Lj1g0008502 Lotus japonicus
Lj4C73T24 Lonicera japonica
Lj4g0024702 Lotus japonicus
Lj4P164T35 Lonicera japonica
Lj5g0001375 Lotus japonicus
Lj7P110T16 Lonicera japonica
Lsat_1_v5_gn_1_1181 Lactuca sativa
Lsat_1_v5_gn_4_161761 Lactuca sativa
Lsat_1_v5_gn_5_157781 Lactuca sativa
Lsat_1_v5_gn_5_157821 Lactuca sativa
Lsat_1_v5_gn_9_79900 Lactuca sativa
Manes.05G182700 Manihot esculenta
Manes.07G053000 Manihot esculenta
Manes.07G053422 Manihot esculenta
Manes.10G086000 Manihot esculenta
Manes.10G086100 Manihot esculenta
Manes.12G116200 Manihot esculenta
Manes.13G110000 Manihot esculenta
Manes.18G048000 Manihot esculenta
MD02G1188200 Malus domestica
MD08G1080000 Malus domestica
MD15G1067000 Malus domestica
MD15G1299400 Malus domestica
Medtr1g017830 Medicago truncatula
Medtr3g103290 Medicago truncatula
Medtr4g097250 Medicago truncatula
Medtr4g097260 Medicago truncatula
MELO3C007649.2 Cucumis melo
MELO3C010793.2 Cucumis melo
Migut.C00402 Erythranthe guttata
Migut.C00403 Erythranthe guttata
Migut.H00334 Erythranthe guttata
Migut.H01320 Erythranthe guttata
Migut.L00422 Erythranthe guttata
Migut.N02794 Erythranthe guttata
Nitab4.5_0000142g0290 Nicotiana tabacum
Nitab4.5_0000142g0300 Nicotiana tabacum
Nitab4.5_0002379g0010 Nicotiana tabacum
Nitab4.5_0002796g0030 Nicotiana tabacum
Nitab4.5_0003129g0070 Nicotiana tabacum
Nitab4.5_0003129g0080 Nicotiana tabacum
Nitab4.5_0004633g0010 Nicotiana tabacum
Nitab4.5_0010576g0010 Nicotiana tabacum
Nn1g09572 Nelumbo nucifera
Nn5g30636 Nelumbo nucifera
Nn6g34510 Nelumbo nucifera
Oeu013335.1 Olea europaea
Oeu015171.1 Olea europaea
Oeu021445.1 Olea europaea
Oeu039850.1 Olea europaea
Oeu048568.1 Olea europaea
Oeu053629.1 Olea europaea
Oeu053665.1 Olea europaea
Oeu054204.1 Olea europaea
Os03g0730200 Oryza sativa ssp. japonica
Os03g0769700 Oryza sativa ssp. japonica
Os07g0123800 Oryza sativa ssp. japonica
Peaxi162Scf00160g00068 Petunia axillaris
Peaxi162Scf00340g00021 Petunia axillaris
Peaxi162Scf00449g00045 Petunia axillaris
Peaxi162Scf00548g00022 Petunia axillaris
Peaxi162Scf00548g00211 Petunia axillaris
PGR004G2665 Punica granatum
PGR031G2497 Punica granatum
PGR083G2885 Punica granatum
PGR102G1077 Punica granatum
PGR142G1913 Punica granatum
PGSC0003DMG400004940 Solanum tuberosum
PGSC0003DMG400021410 Solanum tuberosum
PGSC0003DMG400021411 Solanum tuberosum
PGSC0003DMG400044830 Solanum tuberosum
Phvul.001G029100 Phaseolus vulgaris
Phvul.003G233900 Phaseolus vulgaris
Phvul.009G073000 Phaseolus vulgaris
Phvul.011G154400 Phaseolus vulgaris
Potri.001G290300 Populus trichocarpa
Potri.001G290400 Populus trichocarpa
Potri.002G117100 Populus trichocarpa
Potri.007G006100 Populus trichocarpa
Potri.009G085900 Populus trichocarpa
Potri.009G086000 Populus trichocarpa
Potri.014G006300 Populus trichocarpa
Potri.014G014500 Populus trichocarpa
Potri.014G014600 Populus trichocarpa
Prupe.1G420800 Prunus persica
Prupe.6G218500 Prunus persica
Prupe.8G148600 Prunus persica
Prupe.8G148800 Prunus persica
Psat0s4503g0040 Pisum sativum
Psat4g081240 Pisum sativum
Psat4g081880 Pisum sativum
Psat5g038600 Pisum sativum
PSO017G0117 Papaver somniferum
PSO170G5938 Papaver somniferum
QL06p039341 Quercus lobata
QL11p029532 Quercus lobata
QL12p038359 Quercus lobata
RcHm_v2.0_Chr2g0108431 Rosa chinensis
RcHm_v2.0_Chr6g0248901 Rosa chinensis
RcHm_v2.0_Chr6g0248931 Rosa chinensis
RcHm_v2.0_Chr6g0309871 Rosa chinensis
Rhsim06G0063700 Rhododendron simsii
Rhsim08G0092500 Rhododendron simsii
Rhsim10G0095600 Rhododendron simsii
Rhsim10G0095700 Rhododendron simsii
Sabra07G0004400 Salix brachista
Sabra09G0066000 Salix brachista
Sabra10G0004300 Salix brachista
Sabra14G0006000 Salix brachista
Sabra14G0008700 Salix brachista
SalBow2G0839 Salvia bowleyana
SalBow2G3314 Salvia bowleyana
SalBow5G1212 Salvia bowleyana
SalBow7G1468 Salvia bowleyana
SalBow8G0760 Salvia bowleyana
Sc02g0008050 Simmondsia chinensis
Sc15g0005450 Simmondsia chinensis
Sc15g0005480 Simmondsia chinensis
Sed0003560 Sechium edule
SEGI_13215 Sequoiadendron giganteum
SEGI_21994 Sequoiadendron giganteum
SEGI_24530 Sequoiadendron giganteum
SEGI_27703 Sequoiadendron giganteum
SGA_v2.0_scaffold13G06404 Striga asiatica
SGA_v2.0_scaffold152G36823 Striga asiatica
SGA_v2.0_scaffold15G07476 Striga asiatica
SGA_v2.0_scaffold174G39241 Striga asiatica
Solyc02g092180.1 Solanum lycopersicum
Solyc02g092190.1 Solanum lycopersicum
Solyc04g077620.1 Solanum lycopersicum
Sopen02g036750 Solanum pennellii
Sopen02g036760 Solanum pennellii
Sopen04g031260 Solanum pennellii
Sp1g08770 Schrenkiella parvula
Sp2g05170 Schrenkiella parvula
TAR381G1204 Trochodendron aralioides
TAR625G0391 Trochodendron aralioides
TAR628G1651 Trochodendron aralioides
THA.LOC104816764 Tarenaya hassleriana
Thecc.01G074600 Theobroma cacao
Thecc.02G119200 Theobroma cacao
Thecc.02G119300 Theobroma cacao
Thecc.08G086000 Theobroma cacao
Thhalv10023719m.g Eutrema salsugineum
TPR.G13037 Trifolium pratense
TPR.G24254 Trifolium pratense
TPR.G24259 Trifolium pratense
TPR.G33724 Trifolium pratense
TWI12G1251 Tripterygium wilfordii
TWI56G0236 Tripterygium wilfordii
TWI74G0977 Tripterygium wilfordii
unitig_21.g20306 Utricularia gibba
VMungo0251G2220 Vigna mungo
VMungo0647G0247 Vigna mungo
VMungo1309G2110 Vigna mungo
Zm00001eb056110 Zea mays
Zm00001eb058800 Zea mays
Zm00001eb117890 Zea mays
Zm00001eb213910 Zea mays

User provided reference genes

Program Settings