Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p30820 Brassica napus
A04p23410 Brassica napus
A09p16610 Brassica napus
Aa31LG2G8930 Aethionema arabicum
Actinidia05520 Actinidia chinensis
Actinidia11289 Actinidia chinensis
Actinidia26496 Actinidia chinensis
Actinidia26919 Actinidia chinensis
Actinidia30520 Actinidia chinensis
Ah.07g202470 Amaranthus hybridus
AL2G14150 Arabidopsis lyrata
AL4G25600 Arabidopsis lyrata
Aqoxy5G00007 Aquilegia oxysepala
Aqoxy7G02443 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.9I2FR5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E1NLAK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G6ALAZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JF5U6Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KD19HR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L156KV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MYJ1G5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZRB62E Arachis hypogaea
AT1G61900 Arabidopsis thaliana
AT2G30700 Arabidopsis thaliana
ATR0743G178 Amborella trichopoda
ATR0752G214 Amborella trichopoda
Atru.chr10.2212 Acer truncatum
Atru.chr4.1341 Acer truncatum
Atru.chr6.3178 Acer truncatum
AUR62002364 Chenopodium quinoa
AUR62012699 Chenopodium quinoa
AUR62021959 Chenopodium quinoa
AUR62023821 Chenopodium quinoa
BcaB01g04084 Brassica carinata
BcaB04g20382 Brassica carinata
BcaB07g31294 Brassica carinata
BcaC04g22361 Brassica carinata
BolC1t03866H Brassica oleracea
BolC3t14401H Brassica oleracea
BolC4t27479H Brassica oleracea
BolC9t54923H Brassica oleracea
BraA01t03210Z Brassica rapa
BraA03t10991Z Brassica rapa
BraA09t37297Z Brassica rapa
C01p39150 Brassica napus
C03p20260 Brassica napus
C04p59710 Brassica napus
C09p20180 Brassica napus
CAN.G13.16 Capsicum annuum
CAN.G1426.2 Capsicum annuum
CAN.G404.52 Capsicum annuum
CAN.G404.55 Capsicum annuum
CAN.G569.12 Capsicum annuum
CAN.G720.9 Capsicum annuum
CANSAT54G1501 Cannabis sativa
CANSAT56G0962 Cannabis sativa
CANSAT64G1055 Cannabis sativa
CARHR050410 Cardamine hirsuta
CARHR124200 Cardamine hirsuta
CARHR246560 Cardamine hirsuta
Carub.0002s0314 Capsella rubella
Carub.0004s1188 Capsella rubella
Ca_00618_v3 Cicer arietinum L.
Ca_20459_v3 Cicer arietinum L.
Cc03_g12630 Coffea canephora
Cc05_g02190 Coffea canephora
Cc05_g02450 Coffea canephora
Cc09_g01760 Coffea canephora
CDE02G2947 Ceratophyllum demersum
CDE05G1911 Ceratophyllum demersum
CDE07G1023 Ceratophyllum demersum
CDE07G1029 Ceratophyllum demersum
CDE07G1207 Ceratophyllum demersum
Cfa001898 Carpinus fangiana
Cfa014403 Carpinus fangiana
Cfa014404 Carpinus fangiana
Cfa014405 Carpinus fangiana
Ciclev10015200m.g Citrus clementina
Ciclev10015544m.g Citrus clementina
Ciclev10020018m.g Citrus clementina
CiPaw.01G173500 Carya illinoinensis
CiPaw.02G103300 Carya illinoinensis
CiPaw.03G160300 Carya illinoinensis
CiPaw.04G116400 Carya illinoinensis
CiPaw.09G090900 Carya illinoinensis
CiPaw.10G070400 Carya illinoinensis
ClCG03G004780 Citrullus lanatus
ClCG07G011640 Citrullus lanatus
COL.COLO4_04541 Corchorus olitorius
COL.COLO4_06330 Corchorus olitorius
COL.COLO4_31763 Corchorus olitorius
Cpa.g.sc152.5 Carica papaya
Cpa.g.sc54.4 Carica papaya
Cpa.g.sc9.330 Carica papaya
CsaV3_1G010820 Cucumis sativus L.
CsaV3_4G002570 Cucumis sativus L.
CSS0000716 Camellia sinensis var. sinensis
CSS0004494 Camellia sinensis var. sinensis
CSS0005663 Camellia sinensis var. sinensis
CSS0007752 Camellia sinensis var. sinensis
CSS0008417 Camellia sinensis var. sinensis
CSS0030013 Camellia sinensis var. sinensis
CSS0031894 Camellia sinensis var. sinensis
DCAR_004214 Daucus carota
DCAR_019276 Daucus carota
DCAR_029912 Daucus carota
Dinv05433 Davidia involucrata
Dinv13886 Davidia involucrata
Dinv20046 Davidia involucrata
Dinv44165 Davidia involucrata
Duzib151G0432 Durio zibethinus
Duzib192G0723 Durio zibethinus
Duzib212G0638 Durio zibethinus
Duzib235G1244 Durio zibethinus
Duzib268G0056 Durio zibethinus
ECA234G4482 Erigeron canadensis
ECA236G1749 Erigeron canadensis
ECA238G4032 Erigeron canadensis
EL10Ac3g06028 Beta vulgaris
EL10Ac8g20045 Beta vulgaris
Eucgr.A00037 Eucalyptus grandis
Eucgr.A01709 Eucalyptus grandis
Eucgr.D01317 Eucalyptus grandis
FAN02G0746 Fragaria x ananassa
FAN07G0323 Fragaria x ananassa
FAN09G4809 Fragaria x ananassa
FAN10G3223 Fragaria x ananassa
FAN12G0586 Fragaria x ananassa
FAN12G1872 Fragaria x ananassa
FAN12G3406 Fragaria x ananassa
FAN14G5274 Fragaria x ananassa
FAN17G1654 Fragaria x ananassa
FAN21G2551 Fragaria x ananassa
FAN21G2930 Fragaria x ananassa
FAN22G1910 Fragaria x ananassa
FvH4_3g02240 Fragaria vesca
FvH4_4g10670 Fragaria vesca
FvH4_6g43210 Fragaria vesca
Glyma.06G305300 Glycine max
Glyma.09G227300 Glycine max
Glyma.12G009500 Glycine max
Glyma.12G099200 Glycine max
Glyma.13G205300 Glycine max
Glyma.15G107200 Glycine max
Gohir.A06G148100 Gossypium hirsutum
Gohir.A09G212600 Gossypium hirsutum
Gohir.A10G013100 Gossypium hirsutum
Gohir.D06G154000 Gossypium hirsutum
Gohir.D09G206100 Gossypium hirsutum
Gohir.D10G013000 Gossypium hirsutum
Gorai.006G230000 Gossypium raimondii
Gorai.010G180100 Gossypium raimondii
Gorai.011G014700 Gossypium raimondii
GSVIVG01012736001 Vitis vinifera
GSVIVG01038092001 Vitis vinifera
HanXRQChr03g0090851 Helianthus annuus
HanXRQChr04g0127601 Helianthus annuus
HanXRQChr06g0180881 Helianthus annuus
HanXRQChr06g0180891 Helianthus annuus
HanXRQChr09g0257931 Helianthus annuus
HanXRQChr12g0384551 Helianthus annuus
HanXRQChr16g0516161 Helianthus annuus
HanXRQChr17g0557431 Helianthus annuus
Haze_01418 Corylus avellana
Haze_01420 Corylus avellana
Haze_06792 Corylus avellana
Haze_12868 Corylus avellana
Hma1.2p1_0091F.1_g046390 Hydrangea macrophylla
Hma1.2p1_0328F.1_g126910 Hydrangea macrophylla
HPP92_000851 Vanilla planifolia
HPP92_023717 Vanilla planifolia
Hund03186 Selenicereus undatus
Hund23472 Selenicereus undatus
Lalb_Chr01g0000461 Lupinus albus
Lalb_Chr01g0000471 Lupinus albus
Lalb_Chr03g0024091 Lupinus albus
Lalb_Chr18g0056311 Lupinus albus
Lalb_Chr19g0135821 Lupinus albus
Lalb_Chr19g0135831 Lupinus albus
Lalb_Chr19g0135841 Lupinus albus
Lj1A764T62 Lonicera japonica
Lj1C764T13 Lonicera japonica
Lj2A269T54 Lonicera japonica
Lj3A150T35 Lonicera japonica
Lj3g0002796 Lotus japonicus
Lj3g0006704 Lotus japonicus
Lj6g0017819 Lotus japonicus
Lsat_1_v5_gn_2_35481 Lactuca sativa
Lsat_1_v5_gn_4_60640 Lactuca sativa
Lsat_1_v5_gn_7_92161 Lactuca sativa
Manes.11G127200 Manihot esculenta
Manes.16G007800 Manihot esculenta
Manes.17G038605 Manihot esculenta
Mapoly0002s0205 Marchantia polymorpha
MBI02_g07155_MAGBIO Magnolia biondii
MBI11_g23944_MAGBIO Magnolia biondii
MBI18_g14749_MAGBIO Magnolia biondii
MD03G1229900 Malus domestica
MD05G1344700 Malus domestica
MD05G1345000 Malus domestica
MD05G1345100 Malus domestica
MD09G1108600 Malus domestica
MD10G1320400 Malus domestica
MD11G1250400 Malus domestica
MD17G1096500 Malus domestica
Medtr0221s0020 Medicago truncatula
Medtr2g022990 Medicago truncatula
Medtr4g048040 Medicago truncatula
MELO3C002461.2 Cucumis melo
MELO3C017786.2 Cucumis melo
Migut.G01289 Erythranthe guttata
Migut.M01313 Erythranthe guttata
MSTRG.15984 Avicennia marina
MSTRG.22017 Avicennia marina
MSTRG.24570 Avicennia marina
Nitab4.5_0000225g0070 Nicotiana tabacum
Nitab4.5_0000225g0090 Nicotiana tabacum
Nitab4.5_0002137g0110 Nicotiana tabacum
Nitab4.5_0002921g0020 Nicotiana tabacum
Nitab4.5_0004417g0040 Nicotiana tabacum
Nitab4.5_0005382g0050 Nicotiana tabacum
Nitab4.5_0007583g0030 Nicotiana tabacum
Nitab4.5_0008201g0030 Nicotiana tabacum
Nitab4.5_0008596g0030 Nicotiana tabacum
Nn1g03546 Nelumbo nucifera
Nn1g09726 Nelumbo nucifera
Nn5g29369 Nelumbo nucifera
Oeu011090.1 Olea europaea
Oeu013640.1 Olea europaea
Oeu020488.2 Olea europaea
Oeu022689.1 Olea europaea
Oeu035190.1 Olea europaea
Oeu037362.1 Olea europaea
Oeu051212.1 Olea europaea
Oeu056125.1 Olea europaea
Os07g0102300 Oryza sativa ssp. japonica
Os10g0534100 Oryza sativa ssp. japonica
Peaxi162Scf00007g00923 Petunia axillaris
Peaxi162Scf00126g00811 Petunia axillaris
Peaxi162Scf00262g00127 Petunia axillaris
PGR004G2000 Punica granatum
PGR042G1645 Punica granatum
PGR083G1614 Punica granatum
PGSC0003DMG400028952 Solanum tuberosum
PGSC0003DMG401005053 Solanum tuberosum
PGSC0003DMG401016456 Solanum tuberosum
PGSC0003DMG402005053 Solanum tuberosum
Phvul.006G150200 Phaseolus vulgaris
Phvul.011G011600 Phaseolus vulgaris
Phvul.011G104100 Phaseolus vulgaris
Potri.004G016000 Populus trichocarpa
Potri.007G133733 Populus trichocarpa
Potri.007G133800 Populus trichocarpa
Potri.011G003000 Populus trichocarpa
Potri.017G018000 Populus trichocarpa
Pp3c13_1140 Physcomitrium patens
Pp3c13_16530 Physcomitrium patens
Pp3c19_7530 Physcomitrium patens
Pp3c5_15330 Physcomitrium patens
Prupe.1G201300 Prunus persica
Prupe.3G217500 Prunus persica
Prupe.4G021700 Prunus persica
Prupe.4G179400 Prunus persica
Psat1g181200 Pisum sativum
Psat7g157040 Pisum sativum
Psat7g199440 Pisum sativum
PSO210G2059 Papaver somniferum
PSO210G7317 Papaver somniferum
PSO832G2491 Papaver somniferum
PSO832G3148 Papaver somniferum
QL05p073396 Quercus lobata
QL06p012145 Quercus lobata
QL06p012152 Quercus lobata
QL08p033134 Quercus lobata
QL10p052128 Quercus lobata
RcHm_v2.0_Chr2g0159431 Rosa chinensis
RcHm_v2.0_Chr4g0406321 Rosa chinensis
RcHm_v2.0_Chr5g0003311 Rosa chinensis
RcHm_v2.0_Chr5g0060961 Rosa chinensis
Rhsim02G0082900 Rhododendron simsii
Rhsim04G0053500 Rhododendron simsii
Rhsim04G0055000 Rhododendron simsii
Rhsim04G0055100 Rhododendron simsii
Rhsim13G0154500 Rhododendron simsii
Sabra04G0008300 Salix brachista
Sabra07G0108600 Salix brachista
Sabra07G0120900 Salix brachista
Sabra11G0001100 Salix brachista
Sabra17G0002400 Salix brachista
Sabra17G0002500 Salix brachista
Sabra17G0002800 Salix brachista
Sabra17G0003400 Salix brachista
Sabra17G0004000 Salix brachista
Sabra17G0004500 Salix brachista
Sabra17G0014200 Salix brachista
SalBow2G3287 Salvia bowleyana
SalBow8G4589 Salvia bowleyana
Sc06g0009550 Simmondsia chinensis
Sc06g0009560 Simmondsia chinensis
Sc17g0007330 Simmondsia chinensis
Sc25g0002640 Simmondsia chinensis
Sed0003334 Sechium edule
Sed0013668 Sechium edule
Sed0021507 Sechium edule
Sed0021959 Sechium edule
SEGI_08422 Sequoiadendron giganteum
SEGI_24144 Sequoiadendron giganteum
SGA_v2.0_scaffold12G06177 Striga asiatica
SGA_v2.0_scaffold283G46993 Striga asiatica
SGA_v2.0_scaffold7G03850 Striga asiatica
SHI02184 Sapria himalayana
SHI32811 Sapria himalayana
SMO115G0338 Selaginella moellendorffii
Solyc02g080500.3 Solanum lycopersicum
Solyc03g031680.3 Solanum lycopersicum
Solyc07g052360.2 Solanum lycopersicum
Solyc08g013880.4 Solanum lycopersicum
Solyc11g045330.2 Solanum lycopersicum
Sopen02g025190 Solanum pennellii
Sopen03g005550 Solanum pennellii
Sopen07g025990 Solanum pennellii
Sopen08g004750 Solanum pennellii
Sopen11g020790 Solanum pennellii
Sp2g02640 Schrenkiella parvula
Sp4g13220 Schrenkiella parvula
TAR362G0218 Trochodendron aralioides
TAR624G0751 Trochodendron aralioides
TAR626G1789 Trochodendron aralioides
TAR633G1416 Trochodendron aralioides
THA.LOC104800809 Tarenaya hassleriana
THA.LOC104815835 Tarenaya hassleriana
THA.LOC104818814 Tarenaya hassleriana
Thecc.04G171600 Theobroma cacao
Thecc.06G219500 Theobroma cacao
Thhalv10016766m.g Eutrema salsugineum
Thhalv10023466m.g Eutrema salsugineum
TPR.G30184 Trifolium pratense
TPR.G4632 Trifolium pratense
TPR.G9949 Trifolium pratense
TWI31G1468 Tripterygium wilfordii
TWI36G0494 Tripterygium wilfordii
TWI38G2310 Tripterygium wilfordii
TWI63G1240 Tripterygium wilfordii
TWI75G1513 Tripterygium wilfordii
unitig_21.g20574 Utricularia gibba
unitig_37.g12151 Utricularia gibba
vmacro03688 Vaccinium macrocarpon
vmacro22902 Vaccinium macrocarpon
VMungo0540G0083 Vigna mungo
VMungo1127G0183 Vigna mungo
VMungo1127G0778 Vigna mungo
Zm00001eb021900 Zea mays
Zm00001eb298090 Zea mays

User provided reference genes

Program Settings