Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p00770 Brassica napus
A04p28720 Brassica napus
A05p08390 Brassica napus
A10p33150 Brassica napus
Aa31LG1G22320 Aethionema arabicum
Aa31LG5G23030 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2601 Anthoceros agrestis
Actinidia05307 Actinidia chinensis
Actinidia07044 Actinidia chinensis
Actinidia11256 Actinidia chinensis
Actinidia13139 Actinidia chinensis
Actinidia13872 Actinidia chinensis
Actinidia26454 Actinidia chinensis
Actinidia29222 Actinidia chinensis
Actinidia37214 Actinidia chinensis
Ah.08g219240 Amaranthus hybridus
Ah.16g107060 Amaranthus hybridus
AL3G24220 Arabidopsis lyrata
AL4G34060 Arabidopsis lyrata
AL4G34100 Arabidopsis lyrata
AL6G11720 Arabidopsis lyrata
Aqoxy4G02956 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3H2I46 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DQX1LE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JLT7JT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KXBJ87 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VB8B5D Arachis hypogaea
AT2G37570 Arabidopsis thaliana
AT3G12570 Arabidopsis thaliana
AT5G02480 Arabidopsis thaliana
ATR0559G010 Amborella trichopoda
Atru.chr12.470 Acer truncatum
Atru.chr12.491 Acer truncatum
Atru.chr3.3854 Acer truncatum
Atru.chr3.3855 Acer truncatum
Atru.chr8.1935 Acer truncatum
AUR62001809 Chenopodium quinoa
AUR62009597 Chenopodium quinoa
AUR62038355 Chenopodium quinoa
AUR62041871 Chenopodium quinoa
BcaB01g06166 Brassica carinata
BcaB01g06170 Brassica carinata
BcaB01g06188 Brassica carinata
BcaB02g09272 Brassica carinata
BcaB04g21055 Brassica carinata
BcaB04g21062 Brassica carinata
BcaB04g21065 Brassica carinata
BcaB04g21066 Brassica carinata
BcaB04g21069 Brassica carinata
BcaB06g29004 Brassica carinata
BcaC02g11870 Brassica carinata
BcaC02g11872 Brassica carinata
BcaC06g31992 Brassica carinata
BcaNung02133 Brassica carinata
BNapus_Darmor_BZH_scaffold_149p00090 Brassica napus
BolC1t05200H Brassica oleracea
BolC3t12663H Brassica oleracea
BolC4t22637H Brassica oleracea
BolC9t60142H Brassica oleracea
BraA01t04127Z Brassica rapa
BraA03t09461Z Brassica rapa
BraA04t18349Z Brassica rapa
BraA05t19804Z Brassica rapa
BraA10t45349Z Brassica rapa
C01p52610 Brassica napus
C03p01020 Brassica napus
C04p10380 Brassica napus
C09p74110 Brassica napus
CAN.G501.15 Capsicum annuum
CAN.G786.16 Capsicum annuum
CAN.G901.1 Capsicum annuum
CAN.G97.46 Capsicum annuum
CANSAT35G0052 Cannabis sativa
CANSAT35G1980 Cannabis sativa
CARHR087070 Cardamine hirsuta
CARHR132040 Cardamine hirsuta
CARHR210900 Cardamine hirsuta
Carub.0003s1191 Capsella rubella
Carub.0004s1949 Capsella rubella
Carub.0006s0128 Capsella rubella
Ca_09604_v3 Cicer arietinum L.
Ca_09618_v3 Cicer arietinum L.
Ca_09619_v3 Cicer arietinum L.
CBR_g34723 Chara braunii
CBR_g595 Chara braunii
CBR_g596 Chara braunii
Cc01_g12680 Coffea canephora
Cc02_g08030 Coffea canephora
Cc06_g02790 Coffea canephora
CDE02G1697 Ceratophyllum demersum
CDE04G3629 Ceratophyllum demersum
CDE08G0992 Ceratophyllum demersum
Cfa001496 Carpinus fangiana
Cfa011484 Carpinus fangiana
Cfa017404 Carpinus fangiana
Ciclev10011539m.g Citrus clementina
Ciclev10028249m.g Citrus clementina
Ciclev10031288m.g Citrus clementina
CiPaw.09G190700 Carya illinoinensis
CiPaw.10G144000 Carya illinoinensis
CiPaw.10G144600 Carya illinoinensis
ClCG02G020300 Citrullus lanatus
ClCG04G008290 Citrullus lanatus
ClCG10G021020 Citrullus lanatus
COL.COLO4_12075 Corchorus olitorius
COL.COLO4_14828 Corchorus olitorius
COL.COLO4_14990 Corchorus olitorius
COL.COLO4_18487 Corchorus olitorius
Cpa.g.sc1.391 Carica papaya
Cpa.g.sc190.2 Carica papaya
Cpa.g.sc260.2 Carica papaya
CsaV3_3G034990 Cucumis sativus L.
CsaV3_4G024850 Cucumis sativus L.
CsaV3_6G017000 Cucumis sativus L.
CSS0010694 Camellia sinensis var. sinensis
CSS0016889 Camellia sinensis var. sinensis
CSS0029125 Camellia sinensis var. sinensis
CSS0037104 Camellia sinensis var. sinensis
DCAR_009241 Daucus carota
DCAR_015616 Daucus carota
DCAR_027641 Daucus carota
Dinv01578 Davidia involucrata
Dinv06777 Davidia involucrata
Dinv26000 Davidia involucrata
Dinv31444 Davidia involucrata
Dinv35619 Davidia involucrata
Dinv37187 Davidia involucrata
Duzib093G0675 Durio zibethinus
Duzib106G0020 Durio zibethinus
Duzib106G1443 Durio zibethinus
Duzib114G0597 Durio zibethinus
Duzib128G1132 Durio zibethinus
Duzib150G0079 Durio zibethinus
Duzib168G2383 Durio zibethinus
ECA233G4016 Erigeron canadensis
ECA236G3035 Erigeron canadensis
ECA238G0682 Erigeron canadensis
EL10Ac2g03398 Beta vulgaris
EL10Ac7g15993 Beta vulgaris
Eucgr.A01252 Eucalyptus grandis
Eucgr.J00024 Eucalyptus grandis
Eucgr.J00026 Eucalyptus grandis
FAN01G0180 Fragaria x ananassa
FAN01G0790 Fragaria x ananassa
FAN02G2629 Fragaria x ananassa
FAN03G2384 Fragaria x ananassa
FAN05G2853 Fragaria x ananassa
FAN06G0567 Fragaria x ananassa
FAN06G4782 Fragaria x ananassa
FAN09G4296 Fragaria x ananassa
FAN10G0711 Fragaria x ananassa
FAN14G0164 Fragaria x ananassa
FvH4_6g14050 Fragaria vesca
FvH4_7g22090 Fragaria vesca
Glyma.03G171000 Glycine max
Glyma.10G043200 Glycine max
Glyma.10G043300 Glycine max
Glyma.13G130700 Glycine max
Glyma.13G130800 Glycine max
Glyma.19G172100 Glycine max
Gohir.A01G223100 Gossypium hirsutum
Gohir.A01G223200 Gossypium hirsutum
Gohir.A04G081900 Gossypium hirsutum
Gohir.A05G096600 Gossypium hirsutum
Gohir.A05G301300 Gossypium hirsutum
Gohir.D01G212400 Gossypium hirsutum
Gohir.D01G212500 Gossypium hirsutum
Gohir.D04G120400 Gossypium hirsutum
Gohir.D05G096800 Gossypium hirsutum
Gohir.D05G301000 Gossypium hirsutum
Gorai.002G258300 Gossypium raimondii
Gorai.002G258400 Gossypium raimondii
Gorai.009G100300 Gossypium raimondii
Gorai.009G319000 Gossypium raimondii
Gorai.012G103100 Gossypium raimondii
GSVIVG01016565001 Vitis vinifera
GSVIVG01034193001 Vitis vinifera
HanXRQChr06g0176931 Helianthus annuus
HanXRQChr07g0201151 Helianthus annuus
HanXRQChr08g0220381 Helianthus annuus
HanXRQChr14g0458201 Helianthus annuus
Haze_17046 Corylus avellana
Haze_20763 Corylus avellana
Haze_24074 Corylus avellana
Hma1.2p1_0035F.1_g022250 Hydrangea macrophylla
Hma1.2p1_0141F.1_g063950 Hydrangea macrophylla
Hma1.2p1_0683F.1_g202900 Hydrangea macrophylla
Hma1.2p1_1829F.1_g304510 Hydrangea macrophylla
Hma1.2p1_2718F.1_g327450 Hydrangea macrophylla
HPP92_000799 Vanilla planifolia
HPP92_006611 Vanilla planifolia
HPP92_018120 Vanilla planifolia
HPP92_021133 Vanilla planifolia
HPP92_021134 Vanilla planifolia
Lalb_Chr02g0152991 Lupinus albus
Lalb_Chr02g0153001 Lupinus albus
Lalb_Chr25g0289611 Lupinus albus
Lj1g0018905 Lotus japonicus
Lj1P156T15 Lonicera japonica
Lj1P935T39 Lonicera japonica
Lj2C96T14 Lonicera japonica
Lj3P970T18 Lonicera japonica
Lj4g0002692 Lotus japonicus
Lj5g0004429 Lotus japonicus
Lsat_1_v5_gn_2_116661 Lactuca sativa
Lsat_1_v5_gn_2_116681 Lactuca sativa
Lsat_1_v5_gn_8_38181 Lactuca sativa
Lsat_1_v5_gn_8_38201 Lactuca sativa
Lsat_1_v5_gn_8_82620 Lactuca sativa
Manes.07G114300 Manihot esculenta
Manes.07G114400 Manihot esculenta
Manes.08G144941 Manihot esculenta
Manes.10G031800 Manihot esculenta
MBI05_g06548_MAGBIO Magnolia biondii
MD01G1126100 Malus domestica
MD04G1125700 Malus domestica
MD07G1195600 Malus domestica
Medtr1g069055 Medicago truncatula
Medtr1g069065 Medicago truncatula
MELO3C003120.2 Cucumis melo
MELO3C009268.2 Cucumis melo
MELO3C013691.2 Cucumis melo
Migut.D02109 Erythranthe guttata
Migut.F00792 Erythranthe guttata
Migut.G01108 Erythranthe guttata
Migut.J00341 Erythranthe guttata
Migut.L01936 Erythranthe guttata
MSTRG.10265 Avicennia marina
MSTRG.18586 Avicennia marina
MSTRG.19091 Avicennia marina
MSTRG.21194 Avicennia marina
MSTRG.26767 Avicennia marina
MSTRG.5674 Avicennia marina
Nitab4.5_0000349g0150 Nicotiana tabacum
Nitab4.5_0000527g0170 Nicotiana tabacum
Nitab4.5_0000761g0120 Nicotiana tabacum
Nitab4.5_0001800g0040 Nicotiana tabacum
Nitab4.5_0003969g0010 Nicotiana tabacum
Nitab4.5_0005133g0010 Nicotiana tabacum
Nitab4.5_0013298g0010 Nicotiana tabacum
Nitab4.5_0015114g0010 Nicotiana tabacum
Nn2g10719 Nelumbo nucifera
Nn2g12794 Nelumbo nucifera
Oeu005888.1 Olea europaea
Oeu024356.1 Olea europaea
Oeu031386.1 Olea europaea
Oeu036159.1 Olea europaea
Oeu042601.1 Olea europaea
Oeu051439.1 Olea europaea
Oeu059726.1 Olea europaea
Oeu060036.1 Olea europaea
Os01g0151100 Oryza sativa ssp. japonica
Os01g0840200 Oryza sativa ssp. japonica
Os03g0277100 Oryza sativa ssp. japonica
Peaxi162Scf00165g00185 Petunia axillaris
Peaxi162Scf00406g00045 Petunia axillaris
Peaxi162Scf00407g00042 Petunia axillaris
Peaxi162Scf00760g00019 Petunia axillaris
PGR004G0644 Punica granatum
PGR044G0487 Punica granatum
PGR119G2476 Punica granatum
PGSC0003DMG400000399 Solanum tuberosum
PGSC0003DMG400008844 Solanum tuberosum
PGSC0003DMG400019157 Solanum tuberosum
PGSC0003DMG400027732 Solanum tuberosum
Phvul.007G156900 Phaseolus vulgaris
Phvul.007G157000 Phaseolus vulgaris
Phvul.007G157100 Phaseolus vulgaris
Potri.008G054100 Populus trichocarpa
Potri.010G206400 Populus trichocarpa
Pp3c20_6010 Physcomitrium patens
Pp3c23_14700 Physcomitrium patens
Pp3c24_13760 Physcomitrium patens
Prupe.2G233000 Prunus persica
Prupe.6G252600 Prunus persica
Psat0s1775g0200 Pisum sativum
Psat0s1775g0240 Pisum sativum
PSO339G3306 Papaver somniferum
PSO339G5222 Papaver somniferum
PSO384G4574 Papaver somniferum
PSO648G0130 Papaver somniferum
QL01p032523 Quercus lobata
QL07p031217 Quercus lobata
QL07p047960 Quercus lobata
QL08p059166 Quercus lobata
RcHm_v2.0_Chr1g0366481 Rosa chinensis
RcHm_v2.0_Chr3g0466931 Rosa chinensis
Rhsim04G0156400 Rhododendron simsii
Rhsim05G0190900 Rhododendron simsii
Rhsim13G0084300 Rhododendron simsii
Sabra08G0039100 Salix brachista
Sabra10G0159400 Salix brachista
SalBow3G0716 Salvia bowleyana
SalBow3G2830 Salvia bowleyana
SalBow3G2850 Salvia bowleyana
SalBow4G2647 Salvia bowleyana
Sc01g0004220 Simmondsia chinensis
Sc12g0001600 Simmondsia chinensis
Sc20g0002650 Simmondsia chinensis
Sed0000400 Sechium edule
Sed0001236 Sechium edule
Sed0016856 Sechium edule
Sed0022217 Sechium edule
SEGI_20552 Sequoiadendron giganteum
SGA_v2.0_scaffold126G33796 Striga asiatica
SGA_v2.0_scaffold230G43385 Striga asiatica
SGA_v2.0_scaffold35G14218 Striga asiatica
SGA_v2.0_scaffold94G28583 Striga asiatica
SHI30775 Sapria himalayana
SMO140G0088 Selaginella moellendorffii
Solyc04g011460.3 Solanum lycopersicum
Solyc09g010640.2 Solanum lycopersicum
Solyc10g086420.1 Solanum lycopersicum
Solyc11g066090.1 Solanum lycopersicum
Sopen04g005640 Solanum pennellii
Sopen09g005350 Solanum pennellii
Sopen10g035800 Solanum pennellii
Sopen11g025840 Solanum pennellii
Sp3g10710 Schrenkiella parvula
Sp4g19920 Schrenkiella parvula
Sp6g40030 Schrenkiella parvula
TAR622G0925 Trochodendron aralioides
TAR623G1151 Trochodendron aralioides
TAR633G1126 Trochodendron aralioides
TAR636G3030 Trochodendron aralioides
THA.LOC104799350 Tarenaya hassleriana
THA.LOC104806567 Tarenaya hassleriana
THA.LOC104816282 Tarenaya hassleriana
THA.LOC104827010 Tarenaya hassleriana
THA.LOC104827324 Tarenaya hassleriana
Thecc.05G041800 Theobroma cacao
Thecc.09G324200 Theobroma cacao
Thecc.10G044700 Theobroma cacao
Thhalv10016079m.g Eutrema salsugineum
Thhalv10017729m.g Eutrema salsugineum
Thhalv10020602m.g Eutrema salsugineum
TPR.G23199 Trifolium pratense
TPR.G23201 Trifolium pratense
TWI15G0441 Tripterygium wilfordii
TWI38G0476 Tripterygium wilfordii
TWI53G0764 Tripterygium wilfordii
TWI63G0424 Tripterygium wilfordii
TWI77G0123 Tripterygium wilfordii
unitig_0.g1554 Utricularia gibba
unitig_0.g698 Utricularia gibba
unitig_747.g22026 Utricularia gibba
vmacro03088 Vaccinium macrocarpon
VMungo0720G0012 Vigna mungo
VMungo0720G0187 Vigna mungo
VMungo0720G0902 Vigna mungo
Zm00001eb012540 Zea mays
Zm00001eb124320 Zea mays
Zm00001eb148400 Zea mays
Zm00001eb335930 Zea mays
Zm00001eb397610 Zea mays

User provided reference genes

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