Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p26960 Brassica napus
A07p05070 Brassica napus
A09p10840 Brassica napus
A09p10870 Brassica napus
Aa31LG8G13350 Aethionema arabicum
Actinidia00458 Actinidia chinensis
Actinidia12979 Actinidia chinensis
Actinidia15261 Actinidia chinensis
Actinidia17853 Actinidia chinensis
Ah.01g006730 Amaranthus hybridus
Ah.01g020150 Amaranthus hybridus
Ah.11g043400 Amaranthus hybridus
AL3G47510 Arabidopsis lyrata
AL4G19390 Arabidopsis lyrata
Aqoxy5G01297 Aquilegia oxysepala
Aqoxy6G01410 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.632UCW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D4PHB2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V9CJ7F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WQDV70 Arachis hypogaea
AT2G15760 Arabidopsis thaliana
AT2G26530 Arabidopsis thaliana
ATR0097G009 Amborella trichopoda
Atru.chr13.625 Acer truncatum
Atru.chr5.2772 Acer truncatum
AUR62011434 Chenopodium quinoa
AUR62016627 Chenopodium quinoa
AUR62022462 Chenopodium quinoa
AUR62040062 Chenopodium quinoa
BcaB03g16318 Brassica carinata
BcaB06g27216 Brassica carinata
BcaB07g31782 Brassica carinata
BcaC04g23039 Brassica carinata
BcaC06g36083 Brassica carinata
BolC3t15576H Brassica oleracea
BolC7t41221H Brassica oleracea
BolC9t54171H Brassica oleracea
BraA03t11907Z Brassica rapa
BraA07t28298Z Brassica rapa
BraA09t36727Z Brassica rapa
C03p32340 Brassica napus
C07p08040 Brassica napus
C09p12820 Brassica napus
CAN.G1166.17 Capsicum annuum
CAN.G213.2 Capsicum annuum
CAN.G213.3 Capsicum annuum
CAN.G213.4 Capsicum annuum
CAN.G322.15 Capsicum annuum
CAN.G371.51 Capsicum annuum
CANSAT25G1334 Cannabis sativa
CANSAT25G3674 Cannabis sativa
CARHR106090 Cardamine hirsuta
CARHR120050 Cardamine hirsuta
Carub.0003s2959 Capsella rubella
Carub.0004s0670 Capsella rubella
Ca_12459_v3 Cicer arietinum L.
Ca_12461_v3 Cicer arietinum L.
Ca_13311_v3 Cicer arietinum L.
Ca_15968_v3 Cicer arietinum L.
Ca_18656_v3 Cicer arietinum L.
Ca_30259_v3 Cicer arietinum L.
Cc02_g18570 Coffea canephora
Cc10_g03940 Coffea canephora
CDE10G1358 Ceratophyllum demersum
CDE10G1361 Ceratophyllum demersum
Cfa002645 Carpinus fangiana
Cfa005454 Carpinus fangiana
Cfa006567 Carpinus fangiana
Cfa018506 Carpinus fangiana
Ciclev10001332m.g Citrus clementina
Ciclev10028742m.g Citrus clementina
CiPaw.05G053900 Carya illinoinensis
CiPaw.06G142300 Carya illinoinensis
CiPaw.15G063600 Carya illinoinensis
CiPaw.16G048100 Carya illinoinensis
ClCG02G005790 Citrullus lanatus
ClCG05G019600 Citrullus lanatus
ClCG09G017450 Citrullus lanatus
COL.COLO4_26453 Corchorus olitorius
COL.COLO4_32685 Corchorus olitorius
Cpa.g.sc376.7 Carica papaya
Cpa.g.sc62.35 Carica papaya
CsaV3_2G014120 Cucumis sativus L.
CsaV3_4G034090 Cucumis sativus L.
CsaV3_7G008710 Cucumis sativus L.
CSS0048284 Camellia sinensis var. sinensis
DCAR_019469 Daucus carota
DCAR_020935 Daucus carota
DCAR_022052 Daucus carota
DCAR_022053 Daucus carota
DCAR_022056 Daucus carota
DCAR_022057 Daucus carota
DCAR_029019 Daucus carota
DCAR_029020 Daucus carota
DCAR_029023 Daucus carota
DCAR_029024 Daucus carota
Dinv23581 Davidia involucrata
Dinv42133 Davidia involucrata
Dinv42626 Davidia involucrata
Duzib052G0781 Durio zibethinus
Duzib093G1523 Durio zibethinus
Duzib116G0233 Durio zibethinus
Duzib132G0939 Durio zibethinus
Duzib248G1481 Durio zibethinus
ECA232G5028 Erigeron canadensis
ECA247G0952 Erigeron canadensis
ECA247G1210 Erigeron canadensis
ECA247G3768 Erigeron canadensis
EL10Ac1g01807 Beta vulgaris
EL10Ac9g21828 Beta vulgaris
Eucgr.F00024 Eucalyptus grandis
Eucgr.G01494 Eucalyptus grandis
Eucgr.I01168 Eucalyptus grandis
FAN03G2329 Fragaria x ananassa
FAN05G1074 Fragaria x ananassa
FAN05G4268 Fragaria x ananassa
FAN06G1731 Fragaria x ananassa
FAN12G0524 Fragaria x ananassa
FAN13G0577 Fragaria x ananassa
FAN15G0715 Fragaria x ananassa
FAN15G3466 Fragaria x ananassa
FAN17G2325 Fragaria x ananassa
FAN18G3839 Fragaria x ananassa
FAN20G1156 Fragaria x ananassa
FAN20G1917 Fragaria x ananassa
FAN21G2199 Fragaria x ananassa
FAN23G1430 Fragaria x ananassa
FAN24G0298 Fragaria x ananassa
FAN24G1402 Fragaria x ananassa
FAN24G3043 Fragaria x ananassa
FAN24G3445 Fragaria x ananassa
FAN26G1594 Fragaria x ananassa
FAN27G1419 Fragaria x ananassa
FAN27G1965 Fragaria x ananassa
FvH4_2g06670 Fragaria vesca
FvH4_2g34940 Fragaria vesca
Glyma.02G134500 Glycine max
Glyma.06G037000 Glycine max
Glyma.07G177600 Glycine max
Glyma.07G210700 Glycine max
Glyma.14G080200 Glycine max
Glyma.17G245100 Glycine max
Glyma.20G010200 Glycine max
Gohir.A01G006300 Gossypium hirsutum
Gohir.A01G118400 Gossypium hirsutum
Gohir.A03G087800 Gossypium hirsutum
Gohir.A03G191800 Gossypium hirsutum
Gohir.A05G199948 Gossypium hirsutum
Gohir.A12G025600 Gossypium hirsutum
Gohir.A13G039000 Gossypium hirsutum
Gohir.D01G006300 Gossypium hirsutum
Gohir.D01G106700 Gossypium hirsutum
Gohir.D02G092900 Gossypium hirsutum
Gohir.D02G212700 Gossypium hirsutum
Gohir.D05G203200 Gossypium hirsutum
Gohir.D12G025300 Gossypium hirsutum
Gohir.D13G037500 Gossypium hirsutum
Gorai.002G007300 Gossypium raimondii
Gorai.002G130900 Gossypium raimondii
Gorai.005G104600 Gossypium raimondii
Gorai.005G240700 Gossypium raimondii
Gorai.008G025600 Gossypium raimondii
Gorai.009G209200 Gossypium raimondii
Gorai.013G042200 Gossypium raimondii
GSVIVG01009563001 Vitis vinifera
GSVIVG01031783001 Vitis vinifera
HanXRQChr02g0038421 Helianthus annuus
HanXRQChr02g0038431 Helianthus annuus
HanXRQChr02g0038441 Helianthus annuus
HanXRQChr02g0038461 Helianthus annuus
HanXRQChr02g0038471 Helianthus annuus
HanXRQChr02g0045101 Helianthus annuus
HanXRQChr02g0056151 Helianthus annuus
HanXRQChr03g0072211 Helianthus annuus
HanXRQChr04g0104251 Helianthus annuus
HanXRQChr04g0128301 Helianthus annuus
HanXRQChr09g0268031 Helianthus annuus
HanXRQChr11g0324211 Helianthus annuus
HanXRQChr16g0507771 Helianthus annuus
HanXRQChr16g0508701 Helianthus annuus
Haze_01864 Corylus avellana
Haze_17570 Corylus avellana
Hma1.2p1_0260F.1_g104720 Hydrangea macrophylla
Hma1.2p1_0370F.1_g138000 Hydrangea macrophylla
HPP92_002304 Vanilla planifolia
HPP92_004234 Vanilla planifolia
HPP92_004256 Vanilla planifolia
HPP92_005811 Vanilla planifolia
HPP92_009515 Vanilla planifolia
HPP92_010953 Vanilla planifolia
HPP92_016376 Vanilla planifolia
HPP92_016748 Vanilla planifolia
HPP92_027225 Vanilla planifolia
HPP92_027947 Vanilla planifolia
HPP92_027948 Vanilla planifolia
Lalb_Chr05g0219031 Lupinus albus
Lalb_Chr08g0245661 Lupinus albus
Lalb_Chr10g0095491 Lupinus albus
Lalb_Chr11g0062521 Lupinus albus
Lalb_Chr14g0368901 Lupinus albus
Lalb_Chr16g0384591 Lupinus albus
Lalb_Chr23g0266941 Lupinus albus
Lj1g0012384 Lotus japonicus
Lj4C50T9 Lonicera japonica
Lj4g0016353 Lotus japonicus
Lj4P776T21 Lonicera japonica
Lj5g0000758 Lotus japonicus
Lj5P207T63 Lonicera japonica
Lj9C359T11 Lonicera japonica
Lsat_1_v5_gn_1_19921 Lactuca sativa
Lsat_1_v5_gn_4_124961 Lactuca sativa
Lsat_1_v5_gn_5_113300 Lactuca sativa
Lsat_1_v5_gn_7_87380 Lactuca sativa
Lsat_1_v5_gn_9_110401 Lactuca sativa
Manes.05G170500 Manihot esculenta
Manes.15G142400 Manihot esculenta
Manes.17G093500 Manihot esculenta
Manes.18G034400 Manihot esculenta
MBI02_g21198_MAGBIO Magnolia biondii
MBI06_g08193_MAGBIO Magnolia biondii
MD08G1106900 Malus domestica
MD10G1090600 Malus domestica
MD15G1087600 Malus domestica
Medtr1g021070 Medicago truncatula
Medtr1g033900 Medicago truncatula
Medtr3g101320 Medicago truncatula
Medtr4g086620 Medicago truncatula
MELO3C016732.2 Cucumis melo
MELO3C018439.2 Cucumis melo
MELO3C021907.2 Cucumis melo
Migut.B00315 Erythranthe guttata
Migut.C00606 Erythranthe guttata
Migut.N02690 Erythranthe guttata
Migut.O00510 Erythranthe guttata
MSTRG.1330 Avicennia marina
MSTRG.16762 Avicennia marina
MSTRG.20139 Avicennia marina
MSTRG.22276 Avicennia marina
Nitab4.5_0000068g0430 Nicotiana tabacum
Nitab4.5_0000557g0050 Nicotiana tabacum
Nitab4.5_0000736g0050 Nicotiana tabacum
Nitab4.5_0001413g0010 Nicotiana tabacum
Nitab4.5_0001413g0040 Nicotiana tabacum
Nitab4.5_0001899g0010 Nicotiana tabacum
Nitab4.5_0004334g0030 Nicotiana tabacum
Nitab4.5_0005549g0020 Nicotiana tabacum
Nn1g05459 Nelumbo nucifera
Nn1g05855 Nelumbo nucifera
Nn2g12706 Nelumbo nucifera
Nn2g15727 Nelumbo nucifera
Nn4g23093 Nelumbo nucifera
Nn4g25773 Nelumbo nucifera
Nn5g30193 Nelumbo nucifera
Oeu003301.1 Olea europaea
Oeu006155.1 Olea europaea
Oeu007260.1 Olea europaea
Oeu009759.1 Olea europaea
Oeu011565.1 Olea europaea
Oeu013688.1 Olea europaea
Oeu032237.1 Olea europaea
Os07g0619500 Oryza sativa ssp. japonica
Peaxi162Scf00016g01610 Petunia axillaris
Peaxi162Scf00566g00042 Petunia axillaris
Peaxi162Scf00684g00566 Petunia axillaris
Peaxi162Scf00684g00582 Petunia axillaris
PGR042G3421 Punica granatum
PGR083G2104 Punica granatum
PGR142G1787 Punica granatum
PGSC0003DMG400007993 Solanum tuberosum
PGSC0003DMG400015310 Solanum tuberosum
PGSC0003DMG400018102 Solanum tuberosum
PGSC0003DMG400018346 Solanum tuberosum
PGSC0003DMG400025897 Solanum tuberosum
PGSC0003DMG400031281 Solanum tuberosum
PGSC0003DMG400045678 Solanum tuberosum
Phvul.001G019300 Phaseolus vulgaris
Phvul.003G012800 Phaseolus vulgaris
Phvul.003G294400 Phaseolus vulgaris
Phvul.009G063000 Phaseolus vulgaris
Potri.002G128500 Populus trichocarpa
Potri.004G143500 Populus trichocarpa
Potri.009G105400 Populus trichocarpa
Potri.014G034900 Populus trichocarpa
Prupe.1G441300 Prunus persica
Prupe.8G119300 Prunus persica
Psat5g044240 Pisum sativum
Psat6g011080 Pisum sativum
Psat6g095760 Pisum sativum
Psat7g121880 Pisum sativum
PSO017G5918 Papaver somniferum
PSO170G0875 Papaver somniferum
PSO541G1997 Papaver somniferum
PSO675G9020 Papaver somniferum
QL02p006055 Quercus lobata
QL11p037275 Quercus lobata
RcHm_v2.0_Chr6g0258711 Rosa chinensis
RcHm_v2.0_Chr6g0307061 Rosa chinensis
Rhsim05G0081500 Rhododendron simsii
Rhsim06G0046400 Rhododendron simsii
Rhsim07G0231600 Rhododendron simsii
Rhsim11G0168400 Rhododendron simsii
Sabra02G0100700 Salix brachista
Sabra04G0095000 Salix brachista
Sabra09G0080500 Salix brachista
Sabra14G0024800 Salix brachista
SalBow6G4282 Salvia bowleyana
SalBow8G4159 Salvia bowleyana
Sc03g0001410 Simmondsia chinensis
Sc08g0000020 Simmondsia chinensis
Sc15g0006420 Simmondsia chinensis
Sed0008283 Sechium edule
Sed0014466 Sechium edule
Sed0014858 Sechium edule
Sed0015863 Sechium edule
SEGI_26394 Sequoiadendron giganteum
SGA_v2.0_scaffold32G13089 Striga asiatica
Solyc01g108440.2 Solanum lycopersicum
Solyc03g112700.1 Solanum lycopersicum
Solyc04g079350.1 Solanum lycopersicum
Solyc10g045480.1 Solanum lycopersicum
Solyc12g013610.2 Solanum lycopersicum
Sopen01g050670 Solanum pennellii
Sopen03g031780 Solanum pennellii
Sopen04g032960 Solanum pennellii
Sopen12g006960 Solanum pennellii
Sp3g29010 Schrenkiella parvula
Sp4g07730 Schrenkiella parvula
TAR376G0142 Trochodendron aralioides
TAR381G0762 Trochodendron aralioides
TAR383G0936 Trochodendron aralioides
TAR625G0113 Trochodendron aralioides
THA.LOC104803686 Tarenaya hassleriana
THA.LOC104803791 Tarenaya hassleriana
THA.LOC104807355 Tarenaya hassleriana
THA.LOC104819587 Tarenaya hassleriana
Thecc.02G097700 Theobroma cacao
Thecc.08G013800 Theobroma cacao
Thhalv10022784m.g Eutrema salsugineum
TPR.G10522 Trifolium pratense
TPR.G11144 Trifolium pratense
TPR.G13695 Trifolium pratense
TWI31G1305 Tripterygium wilfordii
TWI36G0039 Tripterygium wilfordii
TWI56G0311 Tripterygium wilfordii
TWI75G0920 Tripterygium wilfordii
TWI79G0295 Tripterygium wilfordii
unitig_37.g12810 Utricularia gibba
vmacro04468 Vaccinium macrocarpon
vmacro19487 Vaccinium macrocarpon
VMungo0251G0262 Vigna mungo
VMungo0647G0868 Vigna mungo
VMungo1215G0333 Vigna mungo
VMungo1309G0135 Vigna mungo
Zm00001eb109480 Zea mays
Zm00001eb327670 Zea mays

User provided reference genes

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