Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p17860 Brassica napus
A02p35550 Brassica napus
A04p13560 Brassica napus
A06p41060 Brassica napus
A10p13090 Brassica napus
Aa31LG5G11980 Aethionema arabicum
Aa31LG8G15520 Aethionema arabicum
Aa31LG9G1100 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2424 Anthoceros agrestis
Actinidia33681 Actinidia chinensis
Ah.03g137020 Amaranthus hybridus
Ah.06g180980 Amaranthus hybridus
AL5G17000 Arabidopsis lyrata
AL7G26270 Arabidopsis lyrata
AL7G49310 Arabidopsis lyrata
AL8G31460 Arabidopsis lyrata
Aqoxy1G04279 Aquilegia oxysepala
Aqoxy5G03766 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.476X2T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.51KSCF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5Z2HMN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6NTG45 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7SL7L9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EG2WXH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L3XFCU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QNP3C2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QRIG84 Arachis hypogaea
AT3G27570 Arabidopsis thaliana
AT4G26620 Arabidopsis thaliana
AT5G40510 Arabidopsis thaliana
AT5G55900 Arabidopsis thaliana
ATR0751G131 Amborella trichopoda
ATR0824G158 Amborella trichopoda
Atru.chr2.3711_Atru.chr2.3712 Acer truncatum
Atru.chr4.1460 Acer truncatum
Atru.chr4.1461 Acer truncatum
Atru.chr6.2404 Acer truncatum
AUR62017146 Chenopodium quinoa
AUR62028469 Chenopodium quinoa
AUR62035661 Chenopodium quinoa
BcaB04g17144 Brassica carinata
BcaB05g23414 Brassica carinata
BcaB06g27525 Brassica carinata
BcaB07g30152 Brassica carinata
BcaB08g35956 Brassica carinata
BcaC03g17473 Brassica carinata
BcaC03g17543 Brassica carinata
BcaC04g20190 Brassica carinata
BcaC06g30976 Brassica carinata
BcaC06g33802 Brassica carinata
BcaC09g50634 Brassica carinata
BcaNung02398 Brassica carinata
BolC1t02196H Brassica oleracea
BolC2t11500H Brassica oleracea
BolC4t26335H Brassica oleracea
BolC7t44185H Brassica oleracea
BolC9t57535H Brassica oleracea
BraA01t01742Z Brassica rapa
BraA02t08557Z Brassica rapa
BraA04t17015Z Brassica rapa
BraA06t27029Z Brassica rapa
BraA10t43405Z Brassica rapa
C01p22660 Brassica napus
C02p54320 Brassica napus
C04p47340 Brassica napus
C07p36680 Brassica napus
C09p46850 Brassica napus
CAN.G1057.5 Capsicum annuum
CAN.G473.14 Capsicum annuum
CAN.G623.25 Capsicum annuum
CANSAT11G0060 Cannabis sativa
CANSAT64G2159 Cannabis sativa
CARHR148950 Cardamine hirsuta
CARHR234200 Cardamine hirsuta
CARHR261470 Cardamine hirsuta
CARHR269270 Cardamine hirsuta
Carub.0005s0600 Capsella rubella
Carub.0007s1425 Capsella rubella
Carub.0007s3501 Capsella rubella
Ca_04164_v3 Cicer arietinum L.
Ca_06403_v3 Cicer arietinum L.
Ca_14200_v3 Cicer arietinum L.
CBR_g30476 Chara braunii
Cc05_g15110 Coffea canephora
Cc07_g01620 Coffea canephora
CDE02G0249 Ceratophyllum demersum
CDE06G2733 Ceratophyllum demersum
CDE08G0880 Ceratophyllum demersum
CDE09G0209 Ceratophyllum demersum
CDE10G0553 Ceratophyllum demersum
CDE10G1281 Ceratophyllum demersum
Cfa007364 Carpinus fangiana
Cfa023374 Carpinus fangiana
Ciclev10008145m.g Citrus clementina
Ciclev10015497m.g Citrus clementina
CiPaw.03G044200 Carya illinoinensis
CiPaw.04G029000 Carya illinoinensis
CiPaw.11G205200 Carya illinoinensis
CiPaw.12G139300 Carya illinoinensis
ClCG09G019290 Citrullus lanatus
ClCG09G021440 Citrullus lanatus
ClCG10G013830 Citrullus lanatus
COL.COLO4_07720 Corchorus olitorius
COL.COLO4_29128 Corchorus olitorius
Cpa.g.sc108.71 Carica papaya
Cpa.g.sc12.123 Carica papaya
CsaV3_3G042850 Cucumis sativus L.
CsaV3_5G027100 Cucumis sativus L.
CsaV3_7G011510 Cucumis sativus L.
CSS0009181 Camellia sinensis var. sinensis
CSS0009424 Camellia sinensis var. sinensis
CSS0010611 Camellia sinensis var. sinensis
CSS0010806 Camellia sinensis var. sinensis
CSS0020999 Camellia sinensis var. sinensis
CSS0022403 Camellia sinensis var. sinensis
CSS0025887 Camellia sinensis var. sinensis
CSS0037148 Camellia sinensis var. sinensis
CSS0041025 Camellia sinensis var. sinensis
DCAR_021724 Daucus carota
DCAR_022609 Daucus carota
Dinv10349 Davidia involucrata
Dinv33438 Davidia involucrata
Dinv40872 Davidia involucrata
Dinv40873 Davidia involucrata
Dinv40874 Davidia involucrata
Duzib147G0179 Durio zibethinus
Duzib213G0767 Durio zibethinus
ECA232G2761 Erigeron canadensis
ECA240G1712 Erigeron canadensis
ECA240G2579 Erigeron canadensis
ECA246G0626 Erigeron canadensis
ECA246G1367 Erigeron canadensis
ECA246G3908 Erigeron canadensis
EL10Ac4g07525 Beta vulgaris
EL10Ac6g14088 Beta vulgaris
Eucgr.F02038 Eucalyptus grandis
Eucgr.I01738 Eucalyptus grandis
FAN01G0315 Fragaria x ananassa
FAN01G0879 Fragaria x ananassa
FAN02G0252 Fragaria x ananassa
FAN02G3695 Fragaria x ananassa
FAN05G0557 Fragaria x ananassa
FAN06G3351 Fragaria x ananassa
FAN08G3584 Fragaria x ananassa
FAN09G3298 Fragaria x ananassa
FAN10G1521 Fragaria x ananassa
FAN11G0011 Fragaria x ananassa
FAN14G2085 Fragaria x ananassa
FAN14G4942 Fragaria x ananassa
FAN14G5033 Fragaria x ananassa
FAN16G0254 Fragaria x ananassa
FAN21G0625 Fragaria x ananassa
FAN22G0208 Fragaria x ananassa
FAN24G2698 Fragaria x ananassa
FvH4_2g11400 Fragaria vesca
FvH4_3g42740 Fragaria vesca
FvH4_6g21150 Fragaria vesca
FvH4_6g51500 Fragaria vesca
Glyma.02G301500 Glycine max
Glyma.08G331002 Glycine max
Glyma.08G331100 Glycine max
Glyma.08G331532 Glycine max
Glyma.14G012700 Glycine max
Glyma.16G070400 Glycine max
Glyma.18G075500 Glycine max
Glyma.19G003700 Glycine max
Glyma.19G060200 Glycine max
Gohir.A01G092800 Gossypium hirsutum
Gohir.A05G355400 Gossypium hirsutum
Gohir.A09G029666 Gossypium hirsutum
Gohir.D01G077300 Gossypium hirsutum
Gohir.D04G057800 Gossypium hirsutum
Gohir.D09G029400 Gossypium hirsutum
Gorai.002G101800 Gossypium raimondii
Gorai.006G034300 Gossypium raimondii
Gorai.012G064500 Gossypium raimondii
GSVIVG01014708001 Vitis vinifera
GSVIVG01032398001 Vitis vinifera
HanXRQChr03g0070451 Helianthus annuus
HanXRQChr03g0080341 Helianthus annuus
HanXRQChr09g0250851 Helianthus annuus
HanXRQChr09g0255221 Helianthus annuus
HanXRQChr09g0266941 Helianthus annuus
HanXRQChr13g0400301 Helianthus annuus
HanXRQChr17g0548441 Helianthus annuus
Haze_09843 Corylus avellana
Haze_14745 Corylus avellana
Haze_16774 Corylus avellana
Hma1.2p1_0999F.1_g246120 Hydrangea macrophylla
Hma1.2p1_1516F.1_g288380 Hydrangea macrophylla
HPP92_018822 Vanilla planifolia
Hund15526 Selenicereus undatus
Hund23031 Selenicereus undatus
Lalb_Chr10g0107451 Lupinus albus
Lalb_Chr14g0362831 Lupinus albus
Lalb_Chr15g0082211 Lupinus albus
Lalb_Chr15g0082221 Lupinus albus
Lalb_Chr17g0348981 Lupinus albus
Lalb_Chr22g0360751 Lupinus albus
Lj1g0005994 Lotus japonicus
Lj2g0019160 Lotus japonicus
LjContig00081g0020581 Lotus japonicus
LjContig00272g0004277 Lotus japonicus
LjContig00272g0005348 Lotus japonicus
LjContig00272g0014572 Lotus japonicus
Lju41C42T9 Lonicera japonica
Lsat_1_v5_gn_0_11741 Lactuca sativa
Lsat_1_v5_gn_4_184060 Lactuca sativa
Lsat_1_v5_gn_9_88880 Lactuca sativa
Manes.15G058500 Manihot esculenta
Manes.15G069800 Manihot esculenta
Manes.15G151200 Manihot esculenta
Manes.17G111900 Manihot esculenta
Mapoly0014s0020 Marchantia polymorpha
MBI14_g08890_MAGBIO Magnolia biondii
MBI14_g08896_MAGBIO Magnolia biondii
MBI14_g13532_MAGBIO Magnolia biondii
MCO07G111 Micromonas commoda
MD00G1190200 Malus domestica
MD03G1029300 Malus domestica
MD09G1024100 Malus domestica
MD09G1024300 Malus domestica
MD09G1024400 Malus domestica
MD09G1024500 Malus domestica
MD09G1024800 Malus domestica
MD09G1025100 Malus domestica
MD09G1025500 Malus domestica
MD09G1025700 Malus domestica
MD09G1025900 Malus domestica
MD09G1026400 Malus domestica
MD09G1026600 Malus domestica
MD09G1044600 Malus domestica
MD09G1045300 Malus domestica
MD11G1032600 Malus domestica
MD17G1026300 Malus domestica
Medtr3g007930 Medicago truncatula
Medtr5g096090 Medicago truncatula
Medtr6g004730 Medicago truncatula
Medtr6g004740 Medicago truncatula
Medtr6g004750 Medicago truncatula
Medtr6g004780 Medicago truncatula
Medtr7g033625 Medicago truncatula
MELO3C021584.2 Cucumis melo
MELO3C024953.2 Cucumis melo
MELO3C026586.2 Cucumis melo
Migut.K01398 Erythranthe guttata
Migut.L00806 Erythranthe guttata
Migut.L00807 Erythranthe guttata
Migut.L00900 Erythranthe guttata
Migut.L00901 Erythranthe guttata
Migut.M01640 Erythranthe guttata
MSTRG.15531 Avicennia marina
MSTRG.7005 Avicennia marina
Nitab4.5_0001860g0140 Nicotiana tabacum
Nitab4.5_0002529g0020 Nicotiana tabacum
Nitab4.5_0003318g0070 Nicotiana tabacum
Nitab4.5_0004583g0120 Nicotiana tabacum
Nitab4.5_0012657g0020 Nicotiana tabacum
Nitab4.5_0026002g0010 Nicotiana tabacum
Nn1g07548 Nelumbo nucifera
Nn3g16712 Nelumbo nucifera
Oeu013558.1 Olea europaea
Oeu017986.1 Olea europaea
Oeu032096.3 Olea europaea
Oeu041353.1 Olea europaea
Oeu048614.1 Olea europaea
Oeu050274.1 Olea europaea
Oeu054440.1 Olea europaea
Os02g0725100 Oryza sativa ssp. japonica
Peaxi162Scf00080g01212 Petunia axillaris
Peaxi162Scf00129g01663 Petunia axillaris
Peaxi162Scf00139g01125 Petunia axillaris
PGR031G2924 Punica granatum
PGR083G1439 Punica granatum
PGSC0003DMG400006917 Solanum tuberosum
PGSC0003DMG400012604 Solanum tuberosum
PGSC0003DMG400022270 Solanum tuberosum
PGSC0003DMG400030043 Solanum tuberosum
Phvul.004G006500 Phaseolus vulgaris
Phvul.006G058900 Phaseolus vulgaris
Phvul.008G280000 Phaseolus vulgaris
Potri.001G344400 Populus trichocarpa
Potri.001G369300 Populus trichocarpa
Pp3c18_13900 Physcomitrium patens
Pp3c21_9690 Physcomitrium patens
Prupe.3G292400 Prunus persica
Prupe.6G025400 Prunus persica
Psat0s1567g0160 Pisum sativum
Psat1g054240 Pisum sativum
Psat2g006840 Pisum sativum
PSO017G5244 Papaver somniferum
PSO111G0089 Papaver somniferum
PSO210G2565 Papaver somniferum
PSO210G7102 Papaver somniferum
PSO384G3457 Papaver somniferum
PSO478G0600 Papaver somniferum
PSO754G0114 Papaver somniferum
QL02p074407 Quercus lobata
QL08p003558 Quercus lobata
QL08p003581 Quercus lobata
QL08p003626 Quercus lobata
QL08p003645 Quercus lobata
RcHm_v2.0_Chr2g0151191 Rosa chinensis
RcHm_v2.0_Chr2g0173141 Rosa chinensis
RcHm_v2.0_Chr5g0076471 Rosa chinensis
Rhsim04G0066400 Rhododendron simsii
Rhsim10G0015600 Rhododendron simsii
Rhsim10G0016700 Rhododendron simsii
Sabra16G0223600 Salix brachista
Sabra16G0242200 Salix brachista
SalBow8G1247 Salvia bowleyana
SalBow8G1672 Salvia bowleyana
Sc03g0007340 Simmondsia chinensis
Sc07g0002270 Simmondsia chinensis
Sc07g0002280 Simmondsia chinensis
Sed0005436 Sechium edule
Sed0005604 Sechium edule
Sed0011456 Sechium edule
SEGI_04030 Sequoiadendron giganteum
SGA_v2.0_scaffold168G38569 Striga asiatica
SGA_v2.0_scaffold30G12413 Striga asiatica
SGA_v2.0_scaffold47G17504 Striga asiatica
SHI16367 Sapria himalayana
SHI26480 Sapria himalayana
SMO347G0001 Selaginella moellendorffii
Solyc02g067840.3 Solanum lycopersicum
Solyc02g093370.2 Solanum lycopersicum
Solyc07g065690.3 Solanum lycopersicum
Sopen02g016950 Solanum pennellii
Sopen02g037940 Solanum pennellii
Sopen07g033900 Solanum pennellii
Sp2g16740 Schrenkiella parvula
Sp6g17750 Schrenkiella parvula
Sp7g01370 Schrenkiella parvula
Sp7g24580 Schrenkiella parvula
TAR517G0010 Trochodendron aralioides
TAR629G2585 Trochodendron aralioides
TAR629G2670 Trochodendron aralioides
THA.LOC104805366 Tarenaya hassleriana
THA.LOC104811674 Tarenaya hassleriana
THA.LOC104823951 Tarenaya hassleriana
Thecc.04G018000 Theobroma cacao
Thecc.07G010200 Theobroma cacao
Thhalv10004412m.g Eutrema salsugineum
Thhalv10015242m.g Eutrema salsugineum
Thhalv10025213m.g Eutrema salsugineum
Thhalv10027837m.g Eutrema salsugineum
TPR.G33260 Trifolium pratense
TPR.G33267 Trifolium pratense
TPR.G470 Trifolium pratense
TPR.G8581 Trifolium pratense
TWI12G1050 Tripterygium wilfordii
TWI36G0203 Tripterygium wilfordii
TWI38G0291 Tripterygium wilfordii
vmacro05868 Vaccinium macrocarpon
vmacro09635 Vaccinium macrocarpon
VMungo0464G1668 Vigna mungo
VMungo0540G0218 Vigna mungo
VMungo0647G1240 Vigna mungo
Zm00001eb189050 Zea mays
Zm00001eb253200 Zea mays

User provided reference genes

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