Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p00720 Brassica napus
A06p40060 Brassica napus
A07p31640 Brassica napus
A07p35670 Brassica napus
A09p04000 Brassica napus
Aa31LG3G16240 Aethionema arabicum
Aa31LG4G11490 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3171 Anthoceros agrestis
Actinidia01960 Actinidia chinensis
Actinidia14128 Actinidia chinensis
Actinidia17570 Actinidia chinensis
Actinidia26240 Actinidia chinensis
Actinidia31954 Actinidia chinensis
Ah.10g031870 Amaranthus hybridus
Ah.12g062510 Amaranthus hybridus
AL2G28480 Arabidopsis lyrata
AL5G19120 Arabidopsis lyrata
AL6G21440 Arabidopsis lyrata
Aqoxy3G03536 Aquilegia oxysepala
Aqoxy4G00361 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6AEW1J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.96UBDB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C0Q7J8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HR29B7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ICZJ7L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L2Z1RL Arachis hypogaea
AT1G69370 Arabidopsis thaliana
AT3G29200 Arabidopsis thaliana
AT5G10870 Arabidopsis thaliana
ATR0730G173 Amborella trichopoda
ATR0739G044 Amborella trichopoda
Atru.chr7.2545 Acer truncatum
Atru.chr8.362 Acer truncatum
AUR62009366 Chenopodium quinoa
AUR62018127 Chenopodium quinoa
AUR62023047 Chenopodium quinoa
AUR62034460 Chenopodium quinoa
BcaB03g15466 Brassica carinata
BcaB03g15900 Brassica carinata
BcaB04g19507 Brassica carinata
BcaB05g23190 Brassica carinata
BcaB07g30092 Brassica carinata
BcaC03g13338 Brassica carinata
BcaC04g23844 Brassica carinata
BcaC06g30888 Brassica carinata
BcaC06g33678 Brassica carinata
BcaC08g45897 Brassica carinata
BolC2t06431H Brassica oleracea
BolC6t38812H Brassica oleracea
BolC6t39376H Brassica oleracea
BolC7t44332H Brassica oleracea
BolC9t53353H Brassica oleracea
BraA02t05057Z Brassica rapa
BraA06t26921Z Brassica rapa
BraA07t30791Z Brassica rapa
BraA07t31155Z Brassica rapa
BraA09t36037Z Brassica rapa
C02p04720 Brassica napus
C06p37020 Brassica napus
C06p40550 Brassica napus
C07p38100 Brassica napus
C09p04220 Brassica napus
CAN.G206.189 Capsicum annuum
CAN.G61.33 Capsicum annuum
CANSAT11G1441 Cannabis sativa
CANSAT64G0817 Cannabis sativa
CANSAT64G2863 Cannabis sativa
CARHR062250 Cardamine hirsuta
CARHR153860 Cardamine hirsuta
CARHR202410 Cardamine hirsuta
Carub.0002s1597 Capsella rubella
Carub.0005s0793 Capsella rubella
Carub.0006s0937 Capsella rubella
Ca_04864_v3 Cicer arietinum L.
Ca_04898_v3 Cicer arietinum L.
Ca_13070_v3 Cicer arietinum L.
Ca_15776_v3 Cicer arietinum L.
CBR_g36495 Chara braunii
CBR_g36499 Chara braunii
CBR_g48729 Chara braunii
Cc07_g03760 Coffea canephora
Cc08_g07910 Coffea canephora
CDE05G2611 Ceratophyllum demersum
CDE07G0629 Ceratophyllum demersum
Cfa007613 Carpinus fangiana
Cfa008914 Carpinus fangiana
Cfa009499 Carpinus fangiana
Cfa013061 Carpinus fangiana
Ciclev10009191m.g Citrus clementina
Ciclev10012189m.g Citrus clementina
CiPaw.03G020900 Carya illinoinensis
CiPaw.04G013800 Carya illinoinensis
CiPaw.05G128400 Carya illinoinensis
CiPaw.06G089800 Carya illinoinensis
CiPaw.07G229900 Carya illinoinensis
CiPaw.08G006100 Carya illinoinensis
ClCG05G016310 Citrullus lanatus
ClCG10G015470 Citrullus lanatus
ClCG11G004600 Citrullus lanatus
COL.COLO4_12246 Corchorus olitorius
COL.COLO4_18946 Corchorus olitorius
Cpa.g.sc1264.2 Carica papaya
Cpa.g.sc127.32 Carica papaya
Cre03.g155200 Chlamydomonas reinhardtii
CsaV3_3G041000 Cucumis sativus L.
CsaV3_4G036570 Cucumis sativus L.
CsaV3_5G038370 Cucumis sativus L.
CSS0002996 Camellia sinensis var. sinensis
CSS0003620 Camellia sinensis var. sinensis
CSS0004574 Camellia sinensis var. sinensis
CSS0011502 Camellia sinensis var. sinensis
CSS0015222 Camellia sinensis var. sinensis
CSS0018194 Camellia sinensis var. sinensis
CSS0018372 Camellia sinensis var. sinensis
CSS0022797 Camellia sinensis var. sinensis
CSS0024860 Camellia sinensis var. sinensis
CSS0028036 Camellia sinensis var. sinensis
CSS0042106 Camellia sinensis var. sinensis
CSS0042474 Camellia sinensis var. sinensis
CSS0049681 Camellia sinensis var. sinensis
CSS0049703 Camellia sinensis var. sinensis
DCAR_005556 Daucus carota
DCAR_022859 Daucus carota
DCAR_025402 Daucus carota
Dinv11495 Davidia involucrata
Dinv11661 Davidia involucrata
Dinv33798 Davidia involucrata
Dinv34108 Davidia involucrata
Duzib147G1043 Durio zibethinus
Duzib168G0941 Durio zibethinus
Duzib251G0155 Durio zibethinus
Duzib268G0794 Durio zibethinus
ECA232G2112 Erigeron canadensis
ECA238G2223 Erigeron canadensis
EL10Ac2g03039 Beta vulgaris
EL10Ac2g04113 Beta vulgaris
Eucgr.I01994 Eucalyptus grandis
Eucgr.J00167 Eucalyptus grandis
FAN02G3959 Fragaria x ananassa
FAN05G1409 Fragaria x ananassa
FAN09G0643 Fragaria x ananassa
FAN09G2878 Fragaria x ananassa
FAN12G1455 Fragaria x ananassa
FAN14G0456 Fragaria x ananassa
FAN15G1991 Fragaria x ananassa
FAN17G0231 Fragaria x ananassa
FAN20G0102 Fragaria x ananassa
FAN22G2320 Fragaria x ananassa
FAN27G0554 Fragaria x ananassa
FvH4_2g41100 Fragaria vesca
FvH4_4g30560 Fragaria vesca
FvH4_6g47770 Fragaria vesca
Glyma.01G054500 Glycine max
Glyma.02G113000 Glycine max
Glyma.02G113100 Glycine max
Glyma.04G061100 Glycine max
Glyma.06G061700 Glycine max
Glyma.08G241000 Glycine max
Glyma.13G059400 Glycine max
Glyma.14G102700 Glycine max
Glyma.17G222700 Glycine max
Glyma.19G027100 Glycine max
Gohir.A06G101700 Gossypium hirsutum
Gohir.A11G070900 Gossypium hirsutum
Gohir.A11G071200 Gossypium hirsutum
Gohir.A13G079600 Gossypium hirsutum
Gohir.D05G061600 Gossypium hirsutum
Gohir.D06G103700 Gossypium hirsutum
Gohir.D11G074800 Gossypium hirsutum
Gohir.D11G075200 Gossypium hirsutum
Gohir.D13G079300 Gossypium hirsutum
Gorai.007G080400 Gossypium raimondii
Gorai.007G080800 Gossypium raimondii
Gorai.009G062700 Gossypium raimondii
Gorai.010G118700 Gossypium raimondii
Gorai.013G090700 Gossypium raimondii
GSVIVG01010091001 Vitis vinifera
GSVIVG01011478001 Vitis vinifera
GSVIVG01035962001 Vitis vinifera
HanXRQChr07g0199531 Helianthus annuus
HanXRQChr09g0264081 Helianthus annuus
HanXRQChr14g0448631 Helianthus annuus
HanXRQChr15g0488421 Helianthus annuus
Haze_11940 Corylus avellana
Haze_14480 Corylus avellana
Haze_21421 Corylus avellana
Hma1.2p1_1284F.1_g272910 Hydrangea macrophylla
Hma1.2p1_2018F.1_g311230 Hydrangea macrophylla
HPP92_004686 Vanilla planifolia
HPP92_004691 Vanilla planifolia
HPP92_017170 Vanilla planifolia
HPP92_018455 Vanilla planifolia
HPP92_018551 Vanilla planifolia
Hund03453 Selenicereus undatus
Hund13177 Selenicereus undatus
Hund19559 Selenicereus undatus
Hund19560 Selenicereus undatus
Lalb_Chr02g0159081 Lupinus albus
Lalb_Chr06g0175131 Lupinus albus
Lalb_Chr21g0318481 Lupinus albus
Lalb_Chr22g0361351 Lupinus albus
Lalb_Chr24g0402001 Lupinus albus
Lj2g0014655 Lotus japonicus
Lj4A114T83 Lonicera japonica
Lj5g0014769 Lotus japonicus
Lj5g0021754 Lotus japonicus
Lsat_1_v5_gn_2_88180 Lactuca sativa
Lsat_1_v5_gn_4_170081 Lactuca sativa
Manes.01G030900 Manihot esculenta
Manes.01G099900 Manihot esculenta
Manes.02G050200 Manihot esculenta
Manes.16G129300 Manihot esculenta
Mapoly0028s0048 Marchantia polymorpha
MBI14_g09681_MAGBIO Magnolia biondii
MBI15_g17826_MAGBIO Magnolia biondii
MBI15_g19323_MAGBIO Magnolia biondii
MBI19_g41017_MAGBIO Magnolia biondii
MCO14G135 Micromonas commoda
MD08G1057400 Malus domestica
MD09G1057700 Malus domestica
MD09G1058000 Malus domestica
MD13G1066600 Malus domestica
MD15G1040000 Malus domestica
MD16G1065700 Malus domestica
MD17G1054600 Malus domestica
Medtr1g013820 Medicago truncatula
Medtr1g013860 Medicago truncatula
Medtr1g013900 Medicago truncatula
Medtr1g013940 Medicago truncatula
Medtr1g013980 Medicago truncatula
Medtr3g106000 Medicago truncatula
Medtr5g043210 Medicago truncatula
Medtr6g013425 Medicago truncatula
Medtr8g442800 Medicago truncatula
MELO3C009834.2 Cucumis melo
MELO3C016962.2 Cucumis melo
MELO3C022018.2 Cucumis melo
Migut.A00337 Erythranthe guttata
Migut.H00667 Erythranthe guttata
Migut.K01296 Erythranthe guttata
MSTRG.15462 Avicennia marina
MSTRG.23909 Avicennia marina
MSTRG.25842 Avicennia marina
MSTRG.3343 Avicennia marina
Nitab4.5_0000159g0240 Nicotiana tabacum
Nitab4.5_0000568g0270 Nicotiana tabacum
Nitab4.5_0001591g0050 Nicotiana tabacum
Nitab4.5_0006099g0020 Nicotiana tabacum
Nn2g12357 Nelumbo nucifera
Nn3g17362 Nelumbo nucifera
Nn4g23312 Nelumbo nucifera
Nn4g24138 Nelumbo nucifera
Oeu000849.1 Olea europaea
Oeu023716.2 Olea europaea
Oeu030216.3 Olea europaea
Os01g0764400 Oryza sativa ssp. japonica
Os02g0180500 Oryza sativa ssp. japonica
Os08g0441600 Oryza sativa ssp. japonica
Os12g0578200 Oryza sativa ssp. japonica
Peaxi162Scf00166g00931 Petunia axillaris
Peaxi162Scf00495g00010 Petunia axillaris
PGR004G2619 Punica granatum
PGR044G2432 Punica granatum
PGR102G2726 Punica granatum
PGSC0003DMG400001438 Solanum tuberosum
PGSC0003DMG400009237 Solanum tuberosum
Phvul.001G041900 Phaseolus vulgaris
Phvul.002G090000 Phaseolus vulgaris
Phvul.004G032900 Phaseolus vulgaris
Phvul.009G087200 Phaseolus vulgaris
Potri.010G162300 Populus trichocarpa
Potri.017G088700 Populus trichocarpa
Potri.018G019250 Populus trichocarpa
Pp3c13_17100 Physcomitrium patens
Pp3c3_23850 Physcomitrium patens
PRCOL_00003331 Prasinoderma coloniale
Prupe.1G281400 Prunus persica
Prupe.1G393400 Prunus persica
Prupe.3G261500 Prunus persica
Psat1g069200 Pisum sativum
Psat1g071160 Pisum sativum
Psat2g127280 Pisum sativum
Psat5g032880 Pisum sativum
Psat6g026840 Pisum sativum
PSO063G3225 Papaver somniferum
PSO063G4447 Papaver somniferum
PSO339G4521 Papaver somniferum
PSO384G1543 Papaver somniferum
PSO478G0708 Papaver somniferum
QL02p018913 Quercus lobata
QL02p018931 Quercus lobata
QL02p018947 Quercus lobata
QL02p039270 Quercus lobata
QL03p070061 Quercus lobata
RcHm_v2.0_Chr2g0166931 Rosa chinensis
RcHm_v2.0_Chr4g0438951 Rosa chinensis
RcHm_v2.0_Chr6g0299441 Rosa chinensis
Rhsim07G0164900 Rhododendron simsii
Rhsim07G0165200 Rhododendron simsii
Rhsim10G0034700 Rhododendron simsii
Rhsim12G0077400 Rhododendron simsii
Sabra04G0066300 Salix brachista
Sabra10G0123400 Salix brachista
Sabra17G0078500 Salix brachista
Sabra18G0021800 Salix brachista
SalBow1G0861 Salvia bowleyana
SalBow1G2352 Salvia bowleyana
SalBow1G4967 Salvia bowleyana
SalBow4G0831 Salvia bowleyana
Sc11g0004860 Simmondsia chinensis
Sc23g0006380 Simmondsia chinensis
Sed0007723 Sechium edule
Sed0010913 Sechium edule
Sed0013447 Sechium edule
Sed0016147 Sechium edule
Sed0026064 Sechium edule
SEGI_28818 Sequoiadendron giganteum
SEGI_31972 Sequoiadendron giganteum
SGA_v2.0_scaffold147G36318 Striga asiatica
SGA_v2.0_scaffold22G09915 Striga asiatica
SGA_v2.0_scaffold236G43753 Striga asiatica
SGA_v2.0_scaffold4G02423 Striga asiatica
SMO364G0791 Selaginella moellendorffii
Solyc02g088460.4 Solanum lycopersicum
Solyc11g017240.3 Solanum lycopersicum
Sopen02g033170 Solanum pennellii
Sopen11g009140 Solanum pennellii
Sp2g17810 Schrenkiella parvula
Sp5g24420 Schrenkiella parvula
Sp6g32600 Schrenkiella parvula
TAR371G0508 Trochodendron aralioides
TAR374G0343 Trochodendron aralioides
TAR383G0970 Trochodendron aralioides
TAR623G0944 Trochodendron aralioides
THA.LOC104805492 Tarenaya hassleriana
THA.LOC104822026 Tarenaya hassleriana
THA.LOC104823898 Tarenaya hassleriana
THA.LOC104824958 Tarenaya hassleriana
Thecc.02G337100 Theobroma cacao
Thecc.04G089100 Theobroma cacao
Thecc.09G016100 Theobroma cacao
Thhalv10004549m.g Eutrema salsugineum
Thhalv10014419m.g Eutrema salsugineum
Thhalv10018909m.g Eutrema salsugineum
TPR.G1851 Trifolium pratense
TPR.G22410 Trifolium pratense
TPR.G26176 Trifolium pratense
TPR.G38891 Trifolium pratense
TWI32G1248 Tripterygium wilfordii
TWI34G0096 Tripterygium wilfordii
TWI34G0464 Tripterygium wilfordii
TWI34G0967 Tripterygium wilfordii
TWI34G1620 Tripterygium wilfordii
TWI79G1782 Tripterygium wilfordii
unitig_52.g17600 Utricularia gibba
unitig_62.g23438 Utricularia gibba
vmacro01337 Vaccinium macrocarpon
vmacro05127 Vaccinium macrocarpon
vmacro05674 Vaccinium macrocarpon
VMungo0464G0711 Vigna mungo
VMungo0647G0593 Vigna mungo
VMungo1215G0188 Vigna mungo
VMungo1215G3000 Vigna mungo
Zm00001eb152250 Zea mays
Zm00001eb179760 Zea mays
Zm00001eb234080 Zea mays
Zm00001eb311210 Zea mays
Zm00001eb370320 Zea mays

User provided reference genes

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