Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p00140 Brassica napus
A05p26000 Brassica napus
A06p42390 Brassica napus
A09p55050 Brassica napus
Aa31LG10G17100 Aethionema arabicum
Aa31LG2G6450 Aethionema arabicum
Aa31LG8G9230 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2838 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.4938 Anthoceros agrestis
Actinidia08478 Actinidia chinensis
Actinidia13659 Actinidia chinensis
Actinidia21135 Actinidia chinensis
Actinidia24916 Actinidia chinensis
Actinidia25400 Actinidia chinensis
Ah.03g137660 Amaranthus hybridus
Ah.11g050360 Amaranthus hybridus
AL3G37050 Arabidopsis lyrata
AL5G14550 Arabidopsis lyrata
AL5G46100 Arabidopsis lyrata
Aqoxy2G03438 Aquilegia oxysepala
Aqoxy3G03953 Aquilegia oxysepala
Aqoxy5G00424 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0W74TV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.1T0HVA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2XQ2YI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.45HR9F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.59HI6Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8L0DUY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AY33HF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B8HL1K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EXF4LS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M8DMLH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RX7YKY Arachis hypogaea
AT3G22740 Arabidopsis thaliana
AT3G25900 Arabidopsis thaliana
AT3G63250 Arabidopsis thaliana
ATR0171G038 Amborella trichopoda
ATR0665G350 Amborella trichopoda
Atru.chr11.1252 Acer truncatum
Atru.chr4.2389 Acer truncatum
Atru.chr4.2412 Acer truncatum
Atru.chr5.1490 Acer truncatum
Atru.chr5.1491 Acer truncatum
AUR62002869 Chenopodium quinoa
AUR62011991 Chenopodium quinoa
AUR62032310 Chenopodium quinoa
AUR62035223 Chenopodium quinoa
AUR62044501 Chenopodium quinoa
BcaB02g08074 Brassica carinata
BcaB06g26382 Brassica carinata
BcaC05g28026 Brassica carinata
BcaC06g31106 Brassica carinata
BcaC06g33941 Brassica carinata
BcaC07g40804 Brassica carinata
BcaC07g42698 Brassica carinata
BolC4t24529H Brassica oleracea
BolC5t32780H Brassica oleracea
BolC7t44026H Brassica oleracea
BolC8t51372H Brassica oleracea
BraA04t15736Z Brassica rapa
BraA05t21485Z Brassica rapa
BraA06t27154Z Brassica rapa
BraA09t40913Z Brassica rapa
C04p29960 Brassica napus
C05p40390 Brassica napus
C07p34940 Brassica napus
C08p37950 Brassica napus
CAN.G1105.3 Capsicum annuum
CAN.G1105.4 Capsicum annuum
CAN.G1402.5 Capsicum annuum
CANSAT01G0755 Cannabis sativa
CANSAT25G1683 Cannabis sativa
CANSAT78G0673 Cannabis sativa
CARHR098590 Cardamine hirsuta
CARHR146880 Cardamine hirsuta
CARHR291700 Cardamine hirsuta
Carub.0003s2287 Capsella rubella
Carub.0005s0373 Capsella rubella
Carub.0005s2993 Capsella rubella
Ca_08618_v3 Cicer arietinum L.
Ca_08626_v3 Cicer arietinum L.
Ca_10863_v3 Cicer arietinum L.
Ca_27383_v3 Cicer arietinum L.
CBR_g57878 Chara braunii
Cc00_g28770 Coffea canephora
Cc01_g19150 Coffea canephora
Cc03_g04100 Coffea canephora
Cc10_g06620 Coffea canephora
Cc11_g10170 Coffea canephora
CDE06G0195 Ceratophyllum demersum
CDE06G2482 Ceratophyllum demersum
CDE07G0935 Ceratophyllum demersum
CDE09G1215 Ceratophyllum demersum
Cfa006178 Carpinus fangiana
Cfa008461 Carpinus fangiana
Cfa018598 Carpinus fangiana
Cfa024620 Carpinus fangiana
Ciclev10005328m.g Citrus clementina
Ciclev10020605m.g Citrus clementina
Ciclev10032092m.g Citrus clementina
CiPaw.01G197500 Carya illinoinensis
CiPaw.02G122600 Carya illinoinensis
CiPaw.15G084800 Carya illinoinensis
ClCG06G006370 Citrullus lanatus
ClCG09G007300 Citrullus lanatus
COL.COLO4_09057 Corchorus olitorius
COL.COLO4_10979 Corchorus olitorius
COL.COLO4_21528 Corchorus olitorius
Cpa.g.sc19.28 Carica papaya
Cpa.g.sc34.94 Carica papaya
Cpa.g.sc58.63 Carica papaya
Cre10.g455650 Chlamydomonas reinhardtii
CsaV3_2G013530 Cucumis sativus L.
CsaV3_5G034310 Cucumis sativus L.
CsaV3_7G027790 Cucumis sativus L.
CSS0004386 Camellia sinensis var. sinensis
CSS0010339 Camellia sinensis var. sinensis
CSS0045268 Camellia sinensis var. sinensis
CSS0049904 Camellia sinensis var. sinensis
CSS0050363 Camellia sinensis var. sinensis
DCAR_002712 Daucus carota
DCAR_023660 Daucus carota
DCAR_030677 Daucus carota
Dinv21088 Davidia involucrata
Dinv32899 Davidia involucrata
Dinv34784 Davidia involucrata
Dinv44565 Davidia involucrata
Duzib052G0762 Durio zibethinus
Duzib211G0436 Durio zibethinus
Duzib251G0409 Durio zibethinus
ECA234G0870 Erigeron canadensis
ECA247G3416 Erigeron canadensis
ECA248G1983 Erigeron canadensis
EL10Ac5g10523 Beta vulgaris
EL10Ac6g14413 Beta vulgaris
EL10Ac7g16402 Beta vulgaris
Eucgr.G02323 Eucalyptus grandis
Eucgr.H03427 Eucalyptus grandis
FAN07G2827 Fragaria x ananassa
FAN12G0700 Fragaria x ananassa
FAN12G1028 Fragaria x ananassa
FAN12G1465 Fragaria x ananassa
FAN15G0114 Fragaria x ananassa
FAN22G0975 Fragaria x ananassa
FAN22G1911 Fragaria x ananassa
FAN24G0229 Fragaria x ananassa
FvH4_2g23130 Fragaria vesca
FvH4_4g00800 Fragaria vesca
FvH4_4g27410 Fragaria vesca
Glyma.03G156500 Glycine max
Glyma.08G261200 Glycine max
Glyma.19G158800 Glycine max
Glyma.20G148900 Glycine max
Gohir.A02G033600 Gossypium hirsutum
Gohir.A03G146600 Gossypium hirsutum
Gohir.A08G065100 Gossypium hirsutum
Gohir.D02G040200 Gossypium hirsutum
Gohir.D02G169700 Gossypium hirsutum
Gohir.D04G081400 Gossypium hirsutum
Gohir.D08G073600 Gossypium hirsutum
Gohir.D13G037100 Gossypium hirsutum
Gorai.004G078000 Gossypium raimondii
Gorai.005G044600 Gossypium raimondii
Gorai.005G190200 Gossypium raimondii
Gorai.006G067900 Gossypium raimondii
Gorai.013G041600 Gossypium raimondii
GSVIVG01001192001 Vitis vinifera
GSVIVG01011899001 Vitis vinifera
GSVIVG01018019001 Vitis vinifera
HanXRQChr08g0213361 Helianthus annuus
HanXRQChr10g0282261 Helianthus annuus
HanXRQChr16g0529241 Helianthus annuus
Haze_04669 Corylus avellana
Haze_11212 Corylus avellana
Haze_17479 Corylus avellana
Hma1.2p1_0061F.1_g033950 Hydrangea macrophylla
Hma1.2p1_0561F.1_g178930 Hydrangea macrophylla
Hma1.2p1_1572F.1_g291510 Hydrangea macrophylla
Hma1.2p1_2163F.1_g315690 Hydrangea macrophylla
HPP92_020353 Vanilla planifolia
Hund09519 Selenicereus undatus
Hund12094 Selenicereus undatus
Hund20809 Selenicereus undatus
Lalb_Chr04g0254721 Lupinus albus
Lalb_Chr06g0160701 Lupinus albus
Lalb_Chr10g0100031 Lupinus albus
Lalb_Chr25g0290191 Lupinus albus
Lj1C49G14 Lonicera japonica
Lj1g0000088 Lotus japonicus
Lj2g0002693 Lotus japonicus
Lj3C1015T9 Lonicera japonica
Lj3C730T4 Lonicera japonica
Lj3g0004964 Lotus japonicus
Lj5g0013491 Lotus japonicus
Lsat_1_v5_gn_4_17621 Lactuca sativa
Lsat_1_v5_gn_5_186100 Lactuca sativa
Lsat_1_v5_gn_9_6080 Lactuca sativa
Manes.01G205100 Manihot esculenta
Manes.05G078500 Manihot esculenta
Manes.06G068700 Manihot esculenta
Manes.14G102300 Manihot esculenta
Manes.15G031300 Manihot esculenta
Mapoly0003s0301 Marchantia polymorpha
Mapoly0020s0162 Marchantia polymorpha
MBI11_g33000_MAGBIO Magnolia biondii
MCO09G108 Micromonas commoda
MD00G1181400 Malus domestica
MD03G1260400 Malus domestica
MD11G1280700 Malus domestica
MD12G1084900 Malus domestica
MD16G1043200 Malus domestica
Medtr1g103290 Medicago truncatula
Medtr5g056640 Medicago truncatula
Medtr7g095280 Medicago truncatula
MELO3C012247.2 Cucumis melo
MELO3C014294.2 Cucumis melo
MELO3C015794.2 Cucumis melo
MELO3C027514.2 Cucumis melo
MELO3C028620.2 Cucumis melo
MELO3C028894.2 Cucumis melo
MELO3C029383.2 Cucumis melo
Migut.D00332 Erythranthe guttata
Migut.E00338 Erythranthe guttata
Migut.G00367 Erythranthe guttata
Migut.I00082 Erythranthe guttata
MSTRG.21544 Avicennia marina
MSTRG.837 Avicennia marina
MSTRG.9965 Avicennia marina
Nitab4.5_0000085g0320 Nicotiana tabacum
Nitab4.5_0000145g0180 Nicotiana tabacum
Nitab4.5_0000252g0130 Nicotiana tabacum
Nitab4.5_0002406g0040 Nicotiana tabacum
Nitab4.5_0003407g0030 Nicotiana tabacum
Nitab4.5_0009452g0020 Nicotiana tabacum
Nn1g02391 Nelumbo nucifera
Nn1g02397 Nelumbo nucifera
Nn1g08709 Nelumbo nucifera
Nn3g17832 Nelumbo nucifera
Nn4g23827 Nelumbo nucifera
Nn6g34130 Nelumbo nucifera
Oeu023619.1 Olea europaea
Oeu039278.1 Olea europaea
Oeu053314.1 Olea europaea
Os01g0772900 Oryza sativa ssp. japonica
Os03g0221200 Oryza sativa ssp. japonica
Os10g0422200 Oryza sativa ssp. japonica
Os12g0607000 Oryza sativa ssp. japonica
Peaxi162Scf00004g02110 Petunia axillaris
Peaxi162Scf00092g00025 Petunia axillaris
Peaxi162Scf00230g01011 Petunia axillaris
PGR004G1463 Punica granatum
PGR075G0001 Punica granatum
PGR119G1773 Punica granatum
PGR119G2068 Punica granatum
PGSC0003DMG400019316 Solanum tuberosum
PGSC0003DMG400032243 Solanum tuberosum
Phvul.001G153900 Phaseolus vulgaris
Phvul.003G036100 Phaseolus vulgaris
Phvul.007G060300 Phaseolus vulgaris
Potri.002G049800 Populus trichocarpa
Potri.005G213100 Populus trichocarpa
Potri.008G155900 Populus trichocarpa
Potri.010G083600 Populus trichocarpa
Potri.010G125200 Populus trichocarpa
Pp3c23_9570 Physcomitrium patens
Pp3c24_8340 Physcomitrium patens
Pp3c8_6230 Physcomitrium patens
PRCOL_00001053 Prasinoderma coloniale
Prupe.1G018900 Prunus persica
Prupe.1G310700 Prunus persica
Prupe.8G236600 Prunus persica
Psat0s5069g0040 Pisum sativum
Psat2g083320 Pisum sativum
Psat3g062800 Pisum sativum
PSO170G6123 Papaver somniferum
PSO210G3555 Papaver somniferum
PSO210G4364 Papaver somniferum
PSO210G6804 Papaver somniferum
PSO210G7192 Papaver somniferum
QL01p042771 Quercus lobata
QL01p042778 Quercus lobata
QL06p001553 Quercus lobata
QL12p020734 Quercus lobata
RcHm_v2.0_Chr1g0350231 Rosa chinensis
RcHm_v2.0_Chr4g0386691 Rosa chinensis
RcHm_v2.0_Chr4g0386711 Rosa chinensis
RcHm_v2.0_Chr4g0386841 Rosa chinensis
RcHm_v2.0_Chr4g0386961 Rosa chinensis
RcHm_v2.0_Chr4g0386981 Rosa chinensis
RcHm_v2.0_Chr4g0387271 Rosa chinensis
RcHm_v2.0_Chr4g0387331 Rosa chinensis
RcHm_v2.0_Chr4g0387351 Rosa chinensis
RcHm_v2.0_Chr4g0387451 Rosa chinensis
RcHm_v2.0_Chr4g0435231 Rosa chinensis
RcHm_v2.0_Chr6g0290381 Rosa chinensis
RcHm_v2.0_Chr7g0204331 Rosa chinensis
Rhsim01G0272800 Rhododendron simsii
Rhsim02G0027800 Rhododendron simsii
Rhsim12G0084400 Rhododendron simsii
Sabra02G0040700 Salix brachista
Sabra05G0162800 Salix brachista
Sabra08G0118700 Salix brachista
Sabra10G0059400 Salix brachista
Sabra10G0095100 Salix brachista
SalBow2G2364 Salvia bowleyana
SalBow4G0978 Salvia bowleyana
SalBow8G1926 Salvia bowleyana
Sc04g0006410 Simmondsia chinensis
Sc06g0007430 Simmondsia chinensis
Sc24g0004240 Simmondsia chinensis
Sed0003582 Sechium edule
Sed0013266 Sechium edule
Sed0018164 Sechium edule
Sed0020839 Sechium edule
Sed0027428 Sechium edule
SEGI_01962 Sequoiadendron giganteum
SEGI_31062 Sequoiadendron giganteum
SGA_v2.0_scaffold12G06138 Striga asiatica
SGA_v2.0_scaffold138G35315 Striga asiatica
SGA_v2.0_scaffold14G06861 Striga asiatica
SGA_v2.0_scaffold191G40482 Striga asiatica
SGA_v2.0_scaffold1G00515 Striga asiatica
SMO340G0029 Selaginella moellendorffii
SMO347G0239 Selaginella moellendorffii
Solyc09g065520.4 Solanum lycopersicum
Solyc09g082460.3 Solanum lycopersicum
Sopen09g027280 Solanum pennellii
Sopen09g031320 Solanum pennellii
Sp2g15140 Schrenkiella parvula
Sp3g20460 Schrenkiella parvula
Sp5g00280 Schrenkiella parvula
TAR362G0067 Trochodendron aralioides
TAR362G0185 Trochodendron aralioides
TAR365G0541 Trochodendron aralioides
TAR371G0616 Trochodendron aralioides
TAR374G1391 Trochodendron aralioides
TAR625G1114 Trochodendron aralioides
TAR628G0038 Trochodendron aralioides
TAR633G0813 Trochodendron aralioides
TAR636G1329 Trochodendron aralioides
THA.LOC104808566 Tarenaya hassleriana
THA.LOC104823038 Tarenaya hassleriana
THA.LOC104824031 Tarenaya hassleriana
THA.LOC104825700 Tarenaya hassleriana
Thecc.01G273600 Theobroma cacao
Thecc.02G231200 Theobroma cacao
Thecc.04G236100 Theobroma cacao
Thhalv10004584m.g Eutrema salsugineum
Thhalv10006074m.g Eutrema salsugineum
Thhalv10021051m.g Eutrema salsugineum
TPR.G24319 Trifolium pratense
TPR.G26124 Trifolium pratense
TPR.G27961 Trifolium pratense
TWI12G1235 Tripterygium wilfordii
TWI75G1394 Tripterygium wilfordii
TWI79G0565 Tripterygium wilfordii
unitig_22.g5268 Utricularia gibba
unitig_8.g3258 Utricularia gibba
unitig_899.g14871 Utricularia gibba
vmacro01381 Vaccinium macrocarpon
vmacro14905 Vaccinium macrocarpon
vmacro15361 Vaccinium macrocarpon
VMungo0720G1536 Vigna mungo
VMungo1383G2322 Vigna mungo
Zm00001eb031360 Zea mays
Zm00001eb135800 Zea mays
Zm00001eb151780 Zea mays
Zm00001eb399940 Zea mays

User provided reference genes

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