Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p16890 Brassica napus
A04p23020 Brassica napus
A05p15220 Brassica napus
A07p10900 Brassica napus
A08p25260 Brassica napus
A08p35820 Brassica napus
A09p66640 Brassica napus
A10p05490 Brassica napus
Aa31LG1G8010 Aethionema arabicum
Aa31LG5G6480 Aethionema arabicum
Aa31LG6G6340 Aethionema arabicum
Actinidia32606 Actinidia chinensis
Ah.09g233280 Amaranthus hybridus
AL1G17020 Arabidopsis lyrata
AL1G42910 Arabidopsis lyrata
AL4G25060 Arabidopsis lyrata
Aqoxy1G01274 Aquilegia oxysepala
Aqoxy1G02057 Aquilegia oxysepala
Aqoxy2G00765 Aquilegia oxysepala
Aqoxy4G00332 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1HKZ2P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2VSR2R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2ZX1NK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5ZM0GR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ADC2ZV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BE15RV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EHX2CQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GZFQ7P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J3GQLC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K9E1NX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MY28PR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NPKG4I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P94LHC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q9N224 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RLF8R8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S46BTS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SXX5S1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V1PJFK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YNV65N Arachis hypogaea
AT1G06980 Arabidopsis thaliana
AT1G29195 Arabidopsis thaliana
AT2G30230 Arabidopsis thaliana
ATR0564G119 Amborella trichopoda
ATR0594G202 Amborella trichopoda
ATR0602G268 Amborella trichopoda
Atru.chr1.2583 Acer truncatum
Atru.chr10.1660 Acer truncatum
Atru.chr10.1661 Acer truncatum
AUR62001865 Chenopodium quinoa
AUR62027684 Chenopodium quinoa
AUR62031213 Chenopodium quinoa
BcaB01g04121 Brassica carinata
BcaB02g06770 Brassica carinata
BcaB02g10309 Brassica carinata
BcaB03g12144 Brassica carinata
BcaB03g13412 Brassica carinata
BcaB03g13898 Brassica carinata
BcaB06g28352 Brassica carinata
BcaB07g32505 Brassica carinata
BcaB07g32506 Brassica carinata
BcaC01g00081 Brassica carinata
BcaC01g06022 Brassica carinata
BcaC02g08037 Brassica carinata
BcaC02g11109 Brassica carinata
BcaC05g24662 Brassica carinata
BcaC06g35409 Brassica carinata
BcaC07g42033 Brassica carinata
BcaC07g42552 Brassica carinata
BolC3t14365H Brassica oleracea
BolC3t19815H Brassica oleracea
BolC4t23566H Brassica oleracea
BolC4t27425H Brassica oleracea
BolC5t29278H Brassica oleracea
BolC7t42149H Brassica oleracea
BolC8t47072H Brassica oleracea
BolC8t52615H Brassica oleracea
BraA03t10977Z Brassica rapa
BraA04t17835Z Brassica rapa
BraA05t20440Z Brassica rapa
BraA07t28879Z Brassica rapa
BraA08t34478Z Brassica rapa
BraA08t35489Z Brassica rapa
BraA09t42004Z Brassica rapa
BraA10t42812Z Brassica rapa
C03p19870 Brassica napus
C03p75580 Brassica napus
C04p20270 Brassica napus
C04p59140 Brassica napus
C05p05070 Brassica napus
C07p16500 Brassica napus
C08p02770 Brassica napus
C08p50870 Brassica napus
CANSAT54G2108 Cannabis sativa
CARHR006650 Cardamine hirsuta
CARHR028500 Cardamine hirsuta
CARHR123530 Cardamine hirsuta
Carub.0001s0626 Capsella rubella
Carub.0001s2738 Capsella rubella
Carub.0004s1139 Capsella rubella
Ca_00438_v3 Cicer arietinum L.
Ca_05675_v3 Cicer arietinum L.
Ca_15012_v3 Cicer arietinum L.
Cc02_g15030 Coffea canephora
CDE02G2609 Ceratophyllum demersum
CDE05G0608 Ceratophyllum demersum
CDE09G0070 Ceratophyllum demersum
CDE10G0843 Ceratophyllum demersum
CDE10G1318 Ceratophyllum demersum
Cfa000611 Carpinus fangiana
Ciclev10003692m.g Citrus clementina
Ciclev10016924m.g Citrus clementina
CiPaw.09G070100 Carya illinoinensis
CiPaw.10G059300 Carya illinoinensis
CiPaw.13G068600 Carya illinoinensis
CiPaw.14G053800 Carya illinoinensis
CiPaw.14G054000 Carya illinoinensis
ClCG01G023750 Citrullus lanatus
ClCG02G019220 Citrullus lanatus
ClCG03G000440 Citrullus lanatus
ClCG03G007660 Citrullus lanatus
COL.COLO4_11161 Corchorus olitorius
COL.COLO4_31289 Corchorus olitorius
Cpa.g.sc2.349 Carica papaya
Cpa.g.sc7.73 Carica papaya
CsaV3_1G033300 Cucumis sativus L.
CsaV3_1G036480 Cucumis sativus L.
CsaV3_6G018940 Cucumis sativus L.
CsaV3_6G050920 Cucumis sativus L.
CSS0012076 Camellia sinensis var. sinensis
CSS0019780 Camellia sinensis var. sinensis
DCAR_004004 Daucus carota
DCAR_005215 Daucus carota
DCAR_007944 Daucus carota
DCAR_012266 Daucus carota
Dinv16774 Davidia involucrata
Dinv40680 Davidia involucrata
Duzib160G0244 Durio zibethinus
Duzib168G0893 Durio zibethinus
Duzib170G0353 Durio zibethinus
Duzib192G0143 Durio zibethinus
Duzib235G0814 Durio zibethinus
ECA234G1876 Erigeron canadensis
ECA248G1839 Erigeron canadensis
EL10Ac7g15926 Beta vulgaris
EL10Ac8g20594 Beta vulgaris
Eucgr.B04008 Eucalyptus grandis
Eucgr.D00486 Eucalyptus grandis
FAN11G1865 Fragaria x ananassa
FAN11G3179 Fragaria x ananassa
FAN16G1800 Fragaria x ananassa
FAN16G1848 Fragaria x ananassa
FAN21G0775 Fragaria x ananassa
FAN21G2420 Fragaria x ananassa
FAN25G0410 Fragaria x ananassa
FAN25G1376 Fragaria x ananassa
FvH4_3g07740 Fragaria vesca
FvH4_3g39820 Fragaria vesca
Glyma.02G232500 Glycine max
Glyma.05G158500 Glycine max
Glyma.08G116200 Glycine max
Glyma.11G163800 Glycine max
Glyma.13G229500 Glycine max
Glyma.14G199900 Glycine max
Glyma.15G083000 Glycine max
Glyma.18G057000 Glycine max
Gohir.A03G025200 Gossypium hirsutum
Gohir.A05G154600 Gossypium hirsutum
Gohir.A06G131100 Gossypium hirsutum
Gohir.A08G203400 Gossypium hirsutum
Gohir.A10G036900 Gossypium hirsutum
Gohir.D03G143300 Gossypium hirsutum
Gohir.D05G109401 Gossypium hirsutum
Gohir.D05G157600 Gossypium hirsutum
Gohir.D06G137200 Gossypium hirsutum
Gohir.D08G220500 Gossypium hirsutum
Gohir.D10G037500 Gossypium hirsutum
Gorai.003G150600 Gossypium raimondii
Gorai.004G234400 Gossypium raimondii
Gorai.009G113600 Gossypium raimondii
Gorai.009G162100 Gossypium raimondii
Gorai.010G159400 Gossypium raimondii
Gorai.011G039500 Gossypium raimondii
GSVIVG01021218001 Vitis vinifera
GSVIVG01024628001 Vitis vinifera
HanXRQChr01g0012221 Helianthus annuus
HanXRQChr08g0228601 Helianthus annuus
HanXRQChr09g0252031 Helianthus annuus
HanXRQChr15g0479961 Helianthus annuus
HanXRQChr16g0518651 Helianthus annuus
HanXRQChr17g0565091 Helianthus annuus
Haze_06227 Corylus avellana
Haze_24418 Corylus avellana
Hma1.2p1_0333F.1_g128060 Hydrangea macrophylla
HPP92_003688 Vanilla planifolia
HPP92_009668 Vanilla planifolia
HPP92_019704 Vanilla planifolia
HPP92_019735 Vanilla planifolia
Lalb_Chr04g0251911 Lupinus albus
Lalb_Chr10g0103631 Lupinus albus
Lalb_Chr12g0205111 Lupinus albus
Lalb_Chr15g0086111 Lupinus albus
Lalb_Chr18g0051411 Lupinus albus
Lalb_Chr18g0054561 Lupinus albus
Lalb_Chr20g0117471 Lupinus albus
Lj1P1192T21 Lonicera japonica
Lj2P301T47 Lonicera japonica
Lj4g0014967 Lotus japonicus
Lj6g0015284 Lotus japonicus
Lj6g0023027 Lotus japonicus
LjContig00141g0023494 Lotus japonicus
Lsat_1_v5_gn_4_49061 Lactuca sativa
Lsat_1_v5_gn_5_174081 Lactuca sativa
Lsat_1_v5_gn_9_14641 Lactuca sativa
Manes.02G217100 Manihot esculenta
Manes.16G040300 Manihot esculenta
Manes.17G056100 Manihot esculenta
Manes.18G145405 Manihot esculenta
MBI06_g08592_MAGBIO Magnolia biondii
MBI15_g28867_MAGBIO Magnolia biondii
MD03G1057000 Malus domestica
MD05G1300400 Malus domestica
MD10G1279500 Malus domestica
MD11G1058700 Malus domestica
Medtr2g016150 Medicago truncatula
Medtr3g031140 Medicago truncatula
Medtr5g074290 Medicago truncatula
MELO3C000026.2 Cucumis melo
MELO3C002655.2 Cucumis melo
MELO3C020520.2 Cucumis melo
MELO3C025688.2 Cucumis melo
Migut.D00844 Erythranthe guttata
Migut.H01435 Erythranthe guttata
Migut.M01036 Erythranthe guttata
Migut.N00756 Erythranthe guttata
MSTRG.13223 Avicennia marina
MSTRG.14735 Avicennia marina
MSTRG.21243 Avicennia marina
MSTRG.7411 Avicennia marina
Nitab4.5_0000821g0030 Nicotiana tabacum
Nitab4.5_0001060g0010 Nicotiana tabacum
Nitab4.5_0002076g0030 Nicotiana tabacum
Nitab4.5_0003711g0050 Nicotiana tabacum
Nitab4.5_0009660g0010 Nicotiana tabacum
Nitab4.5_0012052g0010 Nicotiana tabacum
Nn1g04422 Nelumbo nucifera
Nn1g09120 Nelumbo nucifera
Nn2g11025 Nelumbo nucifera
Nn2g13272 Nelumbo nucifera
Oeu007789.1 Olea europaea
Oeu034631.1 Olea europaea
Oeu039918.1 Olea europaea
Oeu041767.1 Olea europaea
Oeu043109.1 Olea europaea
Oeu043110.1 Olea europaea
Oeu050020.1 Olea europaea
Os01g0165600 Oryza sativa ssp. japonica
Os01g0758500 Oryza sativa ssp. japonica
Os01g0826800 Oryza sativa ssp. japonica
Os03g0298100 Oryza sativa ssp. japonica
Os05g0165200 Oryza sativa ssp. japonica
Os05g0474700 Oryza sativa ssp. japonica
Peaxi162Scf00053g00082 Petunia axillaris
Peaxi162Scf00055g00161 Petunia axillaris
Peaxi162Scf01979g00003 Petunia axillaris
PGR031G1155 Punica granatum
PGR042G0320 Punica granatum
PGR102G1598 Punica granatum
PGR119G0485 Punica granatum
PGSC0003DMG400004388 Solanum tuberosum
PGSC0003DMG400020549 Solanum tuberosum
Phvul.002G238700 Phaseolus vulgaris
Phvul.006G074200 Phaseolus vulgaris
Phvul.006G175900 Phaseolus vulgaris
Phvul.008G251500 Phaseolus vulgaris
Potri.004G057500 Populus trichocarpa
Potri.011G066500 Populus trichocarpa
Potri.013G153100 Populus trichocarpa
Potri.019G123900 Populus trichocarpa
Prupe.4G061900 Prunus persica
Prupe.6G047800 Prunus persica
Psat0s3744g0040 Pisum sativum
Psat1g197920 Pisum sativum
Psat5g154320 Pisum sativum
PSO017G6325 Papaver somniferum
PSO063G0818 Papaver somniferum
PSO229G0155 Papaver somniferum
PSO339G0033 Papaver somniferum
PSO349G0226 Papaver somniferum
PSO384G2891 Papaver somniferum
PSO675G6814 Papaver somniferum
PSO782G3006 Papaver somniferum
QL01p026098 Quercus lobata
QL05p047295 Quercus lobata
RcHm_v2.0_Chr5g0010861 Rosa chinensis
RcHm_v2.0_Chr5g0071711 Rosa chinensis
Rhsim10G0135600 Rhododendron simsii
Rhsim10G0159400 Rhododendron simsii
Rhsim13G0063600 Rhododendron simsii
Rhsim13G0189800 Rhododendron simsii
Sabra04G0037200 Salix brachista
Sabra11G0048100 Salix brachista
Sabra13G0123100 Salix brachista
Sabra19G0122400 Salix brachista
Sabra19G0132000 Salix brachista
SalBow2G3096 Salvia bowleyana
SalBow7G0592 Salvia bowleyana
SalBow7G3903 Salvia bowleyana
SalBow8G3465 Salvia bowleyana
Sc12g0001940 Simmondsia chinensis
Sc17g0005730 Simmondsia chinensis
Sed0005326 Sechium edule
Sed0010690 Sechium edule
Sed0012491 Sechium edule
Sed0020267 Sechium edule
Sed0022533 Sechium edule
SEGI_35510 Sequoiadendron giganteum
SEGI_39353 Sequoiadendron giganteum
SGA_v2.0_scaffold120G32958 Striga asiatica
SGA_v2.0_scaffold16G07685 Striga asiatica
SGA_v2.0_scaffold1G00049 Striga asiatica
Solyc02g076800.1 Solanum lycopersicum
Solyc03g006160.1 Solanum lycopersicum
Solyc06g007370.1 Solanum lycopersicum
Sopen02g021700 Solanum pennellii
Sopen03g002170 Solanum pennellii
Sopen06g002300 Solanum pennellii
Sp1g05680 Schrenkiella parvula
Sp1g25110 Schrenkiella parvula
Sp4g12810 Schrenkiella parvula
TAR452G0002 Trochodendron aralioides
TAR623G0326 Trochodendron aralioides
TAR624G0193 Trochodendron aralioides
TAR626G0913 Trochodendron aralioides
TAR633G0198 Trochodendron aralioides
THA.LOC104800766 Tarenaya hassleriana
THA.LOC104814258 Tarenaya hassleriana
THA.LOC104815818 Tarenaya hassleriana
THA.LOC104826272 Tarenaya hassleriana
Thecc.06G170200 Theobroma cacao
Thecc.09G358400 Theobroma cacao
Thhalv10008836m.g Eutrema salsugineum
Thhalv10009700m.g Eutrema salsugineum
Thhalv10017978m.g Eutrema salsugineum
TPR.G11647 Trifolium pratense
TPR.G25323 Trifolium pratense
TPR.G25720 Trifolium pratense
TWI31G1008 Tripterygium wilfordii
TWI38G1823 Tripterygium wilfordii
TWI63G1557 Tripterygium wilfordii
TWI79G1459 Tripterygium wilfordii
unitig_0.g199 Utricularia gibba
unitig_26.g9349 Utricularia gibba
unitig_578.g16452 Utricularia gibba
unitig_699.g19365 Utricularia gibba
unitig_749.g13664 Utricularia gibba
VMungo0251G0081 Vigna mungo
VMungo0540G2071 Vigna mungo
VMungo0540G2315 Vigna mungo
VMungo0647G1881 Vigna mungo
Zm00001eb013820 Zea mays
Zm00001eb123380 Zea mays
Zm00001eb149280 Zea mays
Zm00001eb152570 Zea mays
Zm00001eb290340 Zea mays
Zm00001eb345980 Zea mays
Zm00001eb368620 Zea mays
Zm00001eb370570 Zea mays
Zm00001eb441690 Zea mays

User provided reference genes

Program Settings