Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p38130 Brassica napus
A06p38370 Brassica napus
A07p39780 Brassica napus
Aa31LG11G7990 Aethionema arabicum
Aa31LG11G8000 Aethionema arabicum
Aa31LG4G4230 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1612 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.478 Anthoceros agrestis
Actinidia19217 Actinidia chinensis
Actinidia22239 Actinidia chinensis
Actinidia26093 Actinidia chinensis
Actinidia40362 Actinidia chinensis
Ah.00g000090 Amaranthus hybridus
Ah.01g023930 Amaranthus hybridus
Ah.01g023940 Amaranthus hybridus
Ah.04g162900 Amaranthus hybridus
AL2G33770 Arabidopsis lyrata
AL8G23110 Arabidopsis lyrata
AL8G23120 Arabidopsis lyrata
Aqoxy1G02157 Aquilegia oxysepala
Aqoxy5G01535 Aquilegia oxysepala
Aqoxy5G01550 Aquilegia oxysepala
Aqoxy5G02976 Aquilegia oxysepala
Aqoxy5G04386 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.86P1YE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CUK8Y6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EZ0MZE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IX6XHP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M20B87 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WC8DZD Arachis hypogaea
AT1G73940 Arabidopsis thaliana
AT5G49400 Arabidopsis thaliana
AT5G49410 Arabidopsis thaliana
ATR0579G141 Amborella trichopoda
ATR0706G059 Amborella trichopoda
ATR1125G025 Amborella trichopoda
ATR1159G054 Amborella trichopoda
ATR1159G066 Amborella trichopoda
ATR1159G071 Amborella trichopoda
Atru.chr3.680 Acer truncatum
Atru.chr3.726 Acer truncatum
Atru.chr4.3029 Acer truncatum
Atru.chr9.1818 Acer truncatum
AUR62004747 Chenopodium quinoa
AUR62012884 Chenopodium quinoa
AUR62027108 Chenopodium quinoa
AUR62037504 Chenopodium quinoa
BcaB03g15737 Brassica carinata
BcaB07g34154 Brassica carinata
BcaB07g34155 Brassica carinata
BcaC03g17719 Brassica carinata
BcaC06g30699 Brassica carinata
BcaNung02601 Brassica carinata
BolC2t11799H Brassica oleracea
BolC6t38486H Brassica oleracea
BolC6t39840H Brassica oleracea
BolC7t44518H Brassica oleracea
BraA02t08788Z Brassica rapa
BraA06t26751Z Brassica rapa
BraA07t30598Z Brassica rapa
BraA07t31525Z Brassica rapa
C02p57300 Brassica napus
C06p33710 Brassica napus
C06p48050 Brassica napus
C07p39890 Brassica napus
CAN.G197.3 Capsicum annuum
CAN.G201.7 Capsicum annuum
CAN.G874.72 Capsicum annuum
CANSAT01G1346 Cannabis sativa
CANSAT21G2548 Cannabis sativa
CANSAT78G1829 Cannabis sativa
CARHR067050 Cardamine hirsuta
CARHR182120 Cardamine hirsuta
CARHR182130 Cardamine hirsuta
Carub.0002s2071 Capsella rubella
Carub.0008s0928 Capsella rubella
Carub.0008s0929 Capsella rubella
Ca_06451_v3 Cicer arietinum L.
Ca_21450_v3 Cicer arietinum L.
Cc03_g00980 Coffea canephora
Cc07_g11660 Coffea canephora
Cc08_g04490 Coffea canephora
Cc08_g05160 Coffea canephora
CDE01G0626 Ceratophyllum demersum
CDE04G0335 Ceratophyllum demersum
CDE07G0806 Ceratophyllum demersum
CDE09G1369 Ceratophyllum demersum
CDE11G1166 Ceratophyllum demersum
CDE12G0657 Ceratophyllum demersum
Cfa006911 Carpinus fangiana
Cfa010227 Carpinus fangiana
Cfa010228 Carpinus fangiana
Cfa010658 Carpinus fangiana
Ciclev10005673m.g Citrus clementina
Ciclev10016311m.g Citrus clementina
Ciclev10022684m.g Citrus clementina
CiPaw.01G139800 Carya illinoinensis
CiPaw.02G075900 Carya illinoinensis
CiPaw.08G138100 Carya illinoinensis
CiPaw.11G106600 Carya illinoinensis
ClCG01G001250 Citrullus lanatus
ClCG06G004640 Citrullus lanatus
ClCG07G008720 Citrullus lanatus
COL.COLO4_10860 Corchorus olitorius
COL.COLO4_11257 Corchorus olitorius
COL.COLO4_34649 Corchorus olitorius
Cpa.g.sc37.116 Carica papaya
Cpa.g.sc6.177 Carica papaya
Cpa.g.sc9.87 Carica papaya
Cre12.g529200 Chlamydomonas reinhardtii
CsaV3_2G015100 Cucumis sativus L.
CsaV3_4G005440 Cucumis sativus L.
CsaV3_5G001370 Cucumis sativus L.
CSS0000240 Camellia sinensis var. sinensis
CSS0002630 Camellia sinensis var. sinensis
CSS0003570 Camellia sinensis var. sinensis
CSS0034555 Camellia sinensis var. sinensis
CSS0038408 Camellia sinensis var. sinensis
CSS0044754 Camellia sinensis var. sinensis
DCAR_002506 Daucus carota
DCAR_019220 Daucus carota
DCAR_025478 Daucus carota
Dinv05607 Davidia involucrata
Dinv10225 Davidia involucrata
Dinv12396 Davidia involucrata
Dinv40028 Davidia involucrata
Dinv44303 Davidia involucrata
Duzib052G0074 Durio zibethinus
Duzib068G1454 Durio zibethinus
Duzib084G1229 Durio zibethinus
Duzib147G0794 Durio zibethinus
Duzib151G0385 Durio zibethinus
ECA232G4044 Erigeron canadensis
ECA233G0063 Erigeron canadensis
ECA246G2338 Erigeron canadensis
EL10Ac1g02248 Beta vulgaris
EL10Ac4g08905 Beta vulgaris
EL10Ac9g22070 Beta vulgaris
Eucgr.A00351 Eucalyptus grandis
Eucgr.A00850 Eucalyptus grandis
Eucgr.D02536 Eucalyptus grandis
FAN07G0091 Fragaria x ananassa
FAN18G1217 Fragaria x ananassa
FAN19G2967 Fragaria x ananassa
FAN28G1354 Fragaria x ananassa
FvH4_1g12530 Fragaria vesca
FvH4_4g19461 Fragaria vesca
FvH4_5g10193 Fragaria vesca
Glyma.07G241300 Glycine max
Glyma.14G008500 Glycine max
Glyma.17G032500 Glycine max
Gohir.1Z049421 Gossypium hirsutum
Gohir.1Z049644 Gossypium hirsutum
Gohir.A01G232040 Gossypium hirsutum
Gohir.A05G416501 Gossypium hirsutum
Gohir.A05G416901 Gossypium hirsutum
Gohir.A07G233400 Gossypium hirsutum
Gohir.A08G000008 Gossypium hirsutum
Gohir.A09G065500 Gossypium hirsutum
Gohir.A10G171300 Gossypium hirsutum
Gohir.A10G243200 Gossypium hirsutum
Gohir.A12G243600 Gossypium hirsutum
Gohir.D03G000300 Gossypium hirsutum
Gohir.D04G192700 Gossypium hirsutum
Gohir.D09G064400 Gossypium hirsutum
Gohir.D10G000101 Gossypium hirsutum
Gohir.D10G178400 Gossypium hirsutum
Gohir.D12G000200 Gossypium hirsutum
Gohir.D12G244600 Gossypium hirsutum
Gorai.003G000600 Gossypium raimondii
Gorai.004G000500 Gossypium raimondii
Gorai.006G079200 Gossypium raimondii
Gorai.006G275100 Gossypium raimondii
Gorai.007G380100 Gossypium raimondii
Gorai.008G262200 Gossypium raimondii
Gorai.009G456300 Gossypium raimondii
Gorai.010G246100 Gossypium raimondii
Gorai.011G199400 Gossypium raimondii
Gorai.012G000100 Gossypium raimondii
Gorai.N020000 Gossypium raimondii
GSVIVG01018876001 Vitis vinifera
GSVIVG01019710001 Vitis vinifera
GSVIVG01035017001 Vitis vinifera
HanXRQChr05g0145931 Helianthus annuus
HanXRQChr09g0261241 Helianthus annuus
HanXRQChr11g0325551 Helianthus annuus
HanXRQChr13g0395311 Helianthus annuus
Haze_01276 Corylus avellana
Haze_03592 Corylus avellana
Haze_03593 Corylus avellana
Haze_03845 Corylus avellana
Haze_17391 Corylus avellana
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla
Hma1.2p1_0436F.1_g152890 Hydrangea macrophylla
HPP92_011573 Vanilla planifolia
HPP92_020738 Vanilla planifolia
Hund00380 Selenicereus undatus
Hund05221 Selenicereus undatus
Lalb_Chr07g0182091 Lupinus albus
Lalb_Chr08g0235841 Lupinus albus
Lalb_Chr10g0093061 Lupinus albus
Lalb_Chr13g0298421 Lupinus albus
Lj1g0003490 Lotus japonicus
Lj2A148G64 Lonicera japonica
Lj4g0023600 Lotus japonicus
Lj6P689T37 Lonicera japonica
Lsat_1_v5_gn_4_151821 Lactuca sativa
Lsat_1_v5_gn_6_116901 Lactuca sativa
Lsat_1_v5_gn_6_18261 Lactuca sativa
Manes.01G000550 Manihot esculenta
Manes.02G222800 Manihot esculenta
Manes.03G202700 Manihot esculenta
Manes.15G005450 Manihot esculenta
Mapoly0023s0038 Marchantia polymorpha
Mapoly0108s0056 Marchantia polymorpha
Mapoly0171s0012 Marchantia polymorpha
MBI10_g00746_MAGBIO Magnolia biondii
MBI18_g05082_MAGBIO Magnolia biondii
MBI19_g07244_MAGBIO Magnolia biondii
MBI19_g17409_MAGBIO Magnolia biondii
MD02G1139500 Malus domestica
MD06G1126400 Malus domestica
MD13G1156300 Malus domestica
MD15G1252600 Malus domestica
MD16G1157200 Malus domestica
Medtr1g032030 Medicago truncatula
Medtr1g032370 Medicago truncatula
Medtr5g097230 Medicago truncatula
MELO3C005810.2 Cucumis melo
MELO3C016404.2 Cucumis melo
MELO3C023334.2 Cucumis melo
Migut.E00773 Erythranthe guttata
Migut.H02511 Erythranthe guttata
Migut.N00048 Erythranthe guttata
MSTRG.2000 Avicennia marina
MSTRG.21776 Avicennia marina
Nitab4.5_0000136g0160 Nicotiana tabacum
Nitab4.5_0000276g0120 Nicotiana tabacum
Nitab4.5_0000450g0050 Nicotiana tabacum
Nitab4.5_0000456g0120 Nicotiana tabacum
Nitab4.5_0004323g0040 Nicotiana tabacum
Nitab4.5_0004323g0070 Nicotiana tabacum
Nitab4.5_0006317g0030 Nicotiana tabacum
Nitab4.5_0009648g0050 Nicotiana tabacum
Nitab4.5_0010629g0030 Nicotiana tabacum
Nn1g00490 Nelumbo nucifera
Nn1g00491 Nelumbo nucifera
Nn3g21679 Nelumbo nucifera
Nn4g25612 Nelumbo nucifera
Oeu001465.1 Olea europaea
Oeu002033.1 Olea europaea
Oeu020469.1 Olea europaea
Oeu063485.1 Olea europaea
Os03g0852500 Oryza sativa ssp. japonica
Os08g0360000 Oryza sativa ssp. japonica
Os11g0199600 Oryza sativa ssp. japonica
Peaxi162Scf00065g00002 Petunia axillaris
Peaxi162Scf00207g01134 Petunia axillaris
Peaxi162Scf00207g01135 Petunia axillaris
Peaxi162Scf00779g00211 Petunia axillaris
Peaxi162Scf01385g00023 Petunia axillaris
PGR031G0625 Punica granatum
PGR031G3587 Punica granatum
PGR119G0836 Punica granatum
PGSC0003DMG400015496 Solanum tuberosum
Phvul.003G112500 Phaseolus vulgaris
Phvul.008G245800 Phaseolus vulgaris
Phvul.008G284700 Phaseolus vulgaris
Phvul.009G074533 Phaseolus vulgaris
Potri.001G453400 Populus trichocarpa
Potri.005G118900 Populus trichocarpa
Potri.008G107100 Populus trichocarpa
Potri.010G142400 Populus trichocarpa
Pp3c14_13970 Physcomitrium patens
Pp3c14_17690 Physcomitrium patens
Pp3c3_17120 Physcomitrium patens
Pp3c4_17120 Physcomitrium patens
Prupe.1G073200 Prunus persica
Prupe.1G122100 Prunus persica
Prupe.5G136900 Prunus persica
Prupe.7G161600 Prunus persica
Psat2g004640 Pisum sativum
Psat4g024600 Pisum sativum
PSO063G6238 Papaver somniferum
PSO210G5285 Papaver somniferum
PSO761G0153 Papaver somniferum
PSO782G3477 Papaver somniferum
QL02p026712 Quercus lobata
QL06p011625 Quercus lobata
QL06p035070 Quercus lobata
QL93p2012_0001 Quercus lobata
QL93p2012_0004 Quercus lobata
QL93p2012_0027 Quercus lobata
RcHm_v2.0_Chr2g0100461 Rosa chinensis
RcHm_v2.0_Chr4g0424571 Rosa chinensis
RcHm_v2.0_Chr7g0188041 Rosa chinensis
Rhsim04G0234200 Rhododendron simsii
Rhsim08G0122600 Rhododendron simsii
Sabra05G0098000 Salix brachista
Sabra08G0081000 Salix brachista
Sabra10G0110100 Salix brachista
Sabra16G0306500 Salix brachista
SalBow1G2231 Salvia bowleyana
SalBow8G1820 Salvia bowleyana
Sc13g0006420 Simmondsia chinensis
Sed0021764 Sechium edule
Sed0022335 Sechium edule
Sed0024924 Sechium edule
Sed0026089 Sechium edule
Sed0027749 Sechium edule
SEGI_00799 Sequoiadendron giganteum
SEGI_06712 Sequoiadendron giganteum
SEGI_08255 Sequoiadendron giganteum
SEGI_21194 Sequoiadendron giganteum
SEGI_31674 Sequoiadendron giganteum
SGA_v2.0_scaffold119G32663 Striga asiatica
SGA_v2.0_scaffold20G09260 Striga asiatica
SMO340G0272 Selaginella moellendorffii
Solyc01g060030.3 Solanum lycopersicum
Solyc02g062530.3 Solanum lycopersicum
Sopen01g026230 Solanum pennellii
Sopen02g013530 Solanum pennellii
Sp2g19740 Schrenkiella parvula
Sp2g19750 Schrenkiella parvula
Sp5g29140 Schrenkiella parvula
SpUn0021_0100 Schrenkiella parvula
SpUn0021_0110 Schrenkiella parvula
TAR365G0409 Trochodendron aralioides
TAR375G0793 Trochodendron aralioides
TAR633G2429 Trochodendron aralioides
THA.LOC104802705 Tarenaya hassleriana
THA.LOC104818892 Tarenaya hassleriana
THA.LOC104823621 Tarenaya hassleriana
THA.LOC104826037 Tarenaya hassleriana
Thecc.03G214000 Theobroma cacao
Thecc.04G047100 Theobroma cacao
Thecc.04G297600 Theobroma cacao
Thhalv10004753m.g Eutrema salsugineum
Thhalv10005097m.g Eutrema salsugineum
Thhalv10019277m.g Eutrema salsugineum
TPR.G1302 Trifolium pratense
TPR.G16856 Trifolium pratense
TWI09G0332 Tripterygium wilfordii
TWI09G0718 Tripterygium wilfordii
TWI60G1724 Tripterygium wilfordii
TWI73G0761 Tripterygium wilfordii
TWI73G1042 Tripterygium wilfordii
unitig_749.g13366 Utricularia gibba
unitig_899.g14639 Utricularia gibba
vmacro08062 Vaccinium macrocarpon
vmacro08521 Vaccinium macrocarpon
vmacro11471 Vaccinium macrocarpon
vmacro17720 Vaccinium macrocarpon
vmacro22958 Vaccinium macrocarpon
vmacro22966 Vaccinium macrocarpon
VMungo0647G1062 Vigna mungo
VMungo1215G2482 Vigna mungo
Zm00001eb091100 Zea mays
Zm00001eb109890 Zea mays
Zm00001eb210620 Zea mays
Zm00001eb276930 Zea mays
Zm00001eb314680 Zea mays
Zm00001eb328920 Zea mays
Zm00001eb408400 Zea mays

User provided reference genes

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