Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p02080 Brassica napus
A10p24640 Brassica napus
Aa31LG4G14250 Aethionema arabicum
Aa31sc51G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1391 Anthoceros agrestis
Actinidia07201 Actinidia chinensis
Actinidia14342 Actinidia chinensis
Actinidia24170 Actinidia chinensis
Actinidia26035 Actinidia chinensis
Actinidia29917 Actinidia chinensis
Actinidia38463 Actinidia chinensis
Actinidia39087 Actinidia chinensis
Actinidia39088 Actinidia chinensis
Ah.08g216630 Amaranthus hybridus
Ah.14g085050 Amaranthus hybridus
AL4G41760 Arabidopsis lyrata
AL5G23300 Arabidopsis lyrata
AL6G24250 Arabidopsis lyrata
Aqoxy2G01502 Aquilegia oxysepala
Aqoxy3G01959 Aquilegia oxysepala
Aqoxy4G00344 Aquilegia oxysepala
Aqoxy6G01900 Aquilegia oxysepala
Aqoxy7G04106 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0GQ7VV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.10ET88 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.112DEI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8LC2ZM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.91WX57 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BW9DGW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F78IM4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JQ2J9Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LT8GNK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P32H1S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R3A9AP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SLZ776 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SYJR2Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TM2X2L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UAXL8L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UY4K7F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XDEJ3R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZR8MN6 Arachis hypogaea
AT3G44830 Arabidopsis thaliana
AT5G13640 Arabidopsis thaliana
ATR0598G040 Amborella trichopoda
ATR0820G113 Amborella trichopoda
Atru.chr1.3901 Acer truncatum
Atru.chr7.1660 Acer truncatum
AUR62001501 Chenopodium quinoa
AUR62009869 Chenopodium quinoa
AUR62025175 Chenopodium quinoa
AUR62028999 Chenopodium quinoa
BcaC01g02180 Brassica carinata
BcaC04g19090 Brassica carinata
BcaC04g24270 Brassica carinata
BcaNung05086 Brassica carinata
BolC2t06575H Brassica oleracea
BolC9t59191H Brassica oleracea
BolSC21t60289H Brassica oleracea
BraA02t05180Z Brassica rapa
BraA10t44527Z Brassica rapa
C02p06330 Brassica napus
C03p67360 Brassica napus
C09p63450 Brassica napus
CAN.G1432.27 Capsicum annuum
CAN.G644.44 Capsicum annuum
CAN.G825.17 Capsicum annuum
CAN.G825.18 Capsicum annuum
CAN.G862.26 Capsicum annuum
CAN.G88.6 Capsicum annuum
CANSAT54G2749 Cannabis sativa
CANSAT56G0366 Cannabis sativa
CANSAT56G3647 Cannabis sativa
CANSAT64G1935 Cannabis sativa
CARHR151210 Cardamine hirsuta
CARHR199800 Cardamine hirsuta
Carub.0005s1058 Capsella rubella
Carub.0006s1180 Capsella rubella
Ca_05012_v3 Cicer arietinum L.
Ca_19361_v3 Cicer arietinum L.
Ca_30866_v3 Cicer arietinum L.
Cc01_g09990 Coffea canephora
Cc04_g01470 Coffea canephora
Cc06_g11860 Coffea canephora
CDE05G0399 Ceratophyllum demersum
CDE05G1782 Ceratophyllum demersum
CDE05G2002 Ceratophyllum demersum
CDE11G1113 Ceratophyllum demersum
Cfa003033 Carpinus fangiana
Cfa003545 Carpinus fangiana
Cfa010103 Carpinus fangiana
Cfa024946 Carpinus fangiana
Ciclev10025070m.g Citrus clementina
Ciclev10025078m.g Citrus clementina
Ciclev10027727m.g Citrus clementina
CiPaw.02G136900 Carya illinoinensis
CiPaw.03G210200 Carya illinoinensis
CiPaw.04G146400 Carya illinoinensis
CiPaw.13G142400 Carya illinoinensis
ClCG02G021780 Citrullus lanatus
ClCG09G000890 Citrullus lanatus
COL.COLO4_18137 Corchorus olitorius
COL.COLO4_19261 Corchorus olitorius
COL.COLO4_19262 Corchorus olitorius
COL.COLO4_30780 Corchorus olitorius
Cpa.g.sc1971.1 Carica papaya
Cpa.g.sc25.98 Carica papaya
Cpa.g.sc28.93 Carica papaya
Cre02.g106400 Chlamydomonas reinhardtii
CsaV3_6G014580 Cucumis sativus L.
CsaV3_7G034580 Cucumis sativus L.
CSS0008837 Camellia sinensis var. sinensis
CSS0017012 Camellia sinensis var. sinensis
CSS0027301 Camellia sinensis var. sinensis
CSS0035073 Camellia sinensis var. sinensis
CSS0038800 Camellia sinensis var. sinensis
DCAR_006142 Daucus carota
DCAR_010500 Daucus carota
DCAR_016131 Daucus carota
DCAR_022700 Daucus carota
DCAR_031641 Daucus carota
Dinv04024 Davidia involucrata
Dinv12541 Davidia involucrata
Dinv12544 Davidia involucrata
Dinv25583 Davidia involucrata
Dinv29407 Davidia involucrata
Dinv42366 Davidia involucrata
Duzib150G0153 Durio zibethinus
Duzib150G1688 Durio zibethinus
Duzib160G0012 Durio zibethinus
Duzib168G2117 Durio zibethinus
Duzib187G0148 Durio zibethinus
Duzib235G0991 Durio zibethinus
ECA234G0407 Erigeron canadensis
ECA234G1007 Erigeron canadensis
ECA238G3768 Erigeron canadensis
ECA247G2688 Erigeron canadensis
EL10Ac7g16394 Beta vulgaris
EL10Ac8g19138 Beta vulgaris
EL10Ac8g19139 Beta vulgaris
Eucgr.C00841 Eucalyptus grandis
Eucgr.J00412 Eucalyptus grandis
Eucgr.J02832 Eucalyptus grandis
FAN19G1430 Fragaria x ananassa
FAN21G2866 Fragaria x ananassa
FAN23G0722 Fragaria x ananassa
FAN25G2533 Fragaria x ananassa
FAN26G0679 Fragaria x ananassa
FAN26G3288 Fragaria x ananassa
FAN28G2627 Fragaria x ananassa
FvH4_1g08180 Fragaria vesca
FvH4_3g30050 Fragaria vesca
Glyma.07G036400 Glycine max
Glyma.11G190400 Glycine max
Glyma.12G084000 Glycine max
Glyma.13G108100 Glycine max
Glyma.16G005800 Glycine max
Glyma.17G051300 Glycine max
Gohir.A06G075100 Gossypium hirsutum
Gohir.A06G192900 Gossypium hirsutum
Gohir.A07G106700 Gossypium hirsutum
Gohir.A08G245800 Gossypium hirsutum
Gohir.A09G079700 Gossypium hirsutum
Gohir.A13G223400 Gossypium hirsutum
Gohir.D06G073900 Gossypium hirsutum
Gohir.D06G200800 Gossypium hirsutum
Gohir.D07G110600 Gossypium hirsutum
Gohir.D08G266800 Gossypium hirsutum
Gohir.D09G080000 Gossypium hirsutum
Gohir.D13G228200 Gossypium hirsutum
Gorai.001G118800 Gossypium raimondii
Gorai.004G284600 Gossypium raimondii
Gorai.006G095300 Gossypium raimondii
Gorai.010G086400 Gossypium raimondii
Gorai.010G234300 Gossypium raimondii
Gorai.013G258900 Gossypium raimondii
GSVIVG01015119001 Vitis vinifera
GSVIVG01016784001 Vitis vinifera
GSVIVG01031419001 Vitis vinifera
HanXRQChr02g0032121 Helianthus annuus
HanXRQChr10g0312241 Helianthus annuus
HanXRQChr12g0354301 Helianthus annuus
HanXRQChr14g0451881 Helianthus annuus
Haze_16009 Corylus avellana
Haze_23470 Corylus avellana
Haze_25967 Corylus avellana
Hma1.2p1_0051F.1_g029780 Hydrangea macrophylla
Hma1.2p1_0291F.1_g115230 Hydrangea macrophylla
Hma1.2p1_0797F.1_g219370 Hydrangea macrophylla
HPP92_004378 Vanilla planifolia
HPP92_016188 Vanilla planifolia
HPP92_026729 Vanilla planifolia
Hund05747 Selenicereus undatus
Hund07719 Selenicereus undatus
Hund07720 Selenicereus undatus
Hund08711 Selenicereus undatus
Hund25956 Selenicereus undatus
Lalb_Chr04g0263341 Lupinus albus
Lalb_Chr12g0200031 Lupinus albus
Lalb_Chr13g0299561 Lupinus albus
Lalb_Chr19g0136791 Lupinus albus
Lalb_Chr19g0136801 Lupinus albus
Lj1A218T45 Lonicera japonica
Lj3g0002510 Lotus japonicus
Lj3g0011590 Lotus japonicus
Lj4g0014621 Lotus japonicus
Lj5A39G21 Lonicera japonica
Lj7C682G11 Lonicera japonica
Lsat_1_v5_gn_1_37120 Lactuca sativa
Lsat_1_v5_gn_1_91100 Lactuca sativa
Lsat_1_v5_gn_2_96780 Lactuca sativa
Lsat_1_v5_gn_4_164881 Lactuca sativa
Lsat_1_v5_gn_5_135721 Lactuca sativa
Lsat_1_v5_gn_5_141980 Lactuca sativa
Lsat_1_v5_gn_7_25621 Lactuca sativa
Lsat_1_v5_gn_7_25641 Lactuca sativa
Lsat_1_v5_gn_7_34861 Lactuca sativa
Lsat_1_v5_gn_9_39480 Lactuca sativa
Lsat_1_v5_gn_9_45260 Lactuca sativa
Lsat_1_v5_gn_9_61180 Lactuca sativa
Manes.03G037800 Manihot esculenta
Manes.04G010700 Manihot esculenta
Manes.04G142900 Manihot esculenta
Manes.11G022100 Manihot esculenta
Manes.11G155400 Manihot esculenta
Mapoly0008s0119 Marchantia polymorpha
MBI17_g17032_MAGBIO Magnolia biondii
MCO05G688 Micromonas commoda
MD02G1086400 Malus domestica
MD11G1154200 Malus domestica
MD15G1213500 Malus domestica
Medtr4g056140 Medicago truncatula
Medtr4g125640 Medicago truncatula
Medtr6g045280 Medicago truncatula
Medtr8g019570 Medicago truncatula
Medtr8g104960 Medicago truncatula
MELO3C021466.2 Cucumis melo
MELO3C024364.2 Cucumis melo
Migut.D00944 Erythranthe guttata
Migut.D02322 Erythranthe guttata
Migut.I01060 Erythranthe guttata
Migut.J00954 Erythranthe guttata
MSTRG.19480 Avicennia marina
MSTRG.9513 Avicennia marina
Nitab4.5_0000442g0170 Nicotiana tabacum
Nitab4.5_0002072g0080 Nicotiana tabacum
Nitab4.5_0002795g0120 Nicotiana tabacum
Nitab4.5_0002842g0110 Nicotiana tabacum
Nitab4.5_0002879g0120 Nicotiana tabacum
Nitab4.5_0003470g0030 Nicotiana tabacum
Nitab4.5_0006017g0020 Nicotiana tabacum
Nitab4.5_0010903g0010 Nicotiana tabacum
Nitab4.5_0011707g0010 Nicotiana tabacum
Nn2g13954 Nelumbo nucifera
Nn3g18951 Nelumbo nucifera
Nn6g35583 Nelumbo nucifera
Nn8g38725 Nelumbo nucifera
Oeu006214.1 Olea europaea
Oeu024565.1 Olea europaea
Oeu026996.1 Olea europaea
Oeu039145.1 Olea europaea
Oeu058718.1 Olea europaea
Oeu061167.1 Olea europaea
Os09g0444200 Oryza sativa ssp. japonica
Peaxi162Scf00038g01829 Petunia axillaris
Peaxi162Scf00150g00811 Petunia axillaris
Peaxi162Scf00157g00215 Petunia axillaris
Peaxi162Scf00207g01433 Petunia axillaris
Peaxi162Scf00246g00023 Petunia axillaris
PGR102G0164 Punica granatum
PGR142G2682 Punica granatum
PGSC0003DMG400000466 Solanum tuberosum
PGSC0003DMG400002483 Solanum tuberosum
PGSC0003DMG400004889 Solanum tuberosum
PGSC0003DMG400007127 Solanum tuberosum
PGSC0003DMG400020953 Solanum tuberosum
Phvul.003G133000 Phaseolus vulgaris
Phvul.010G132900 Phaseolus vulgaris
Phvul.011G088800 Phaseolus vulgaris
Potri.001G171000 Populus trichocarpa
Potri.003G063100 Populus trichocarpa
Potri.004G190100 Populus trichocarpa
Potri.009G150800 Populus trichocarpa
Pp3c2_20030 Physcomitrium patens
PRCOL_00006657 Prasinoderma coloniale
Prupe.6G116700 Prunus persica
Prupe.7G203400 Prunus persica
Psat0ss6263g0160 Pisum sativum
Psat4g183520 Pisum sativum
Psat7g143920 Pisum sativum
PSO210G0180 Papaver somniferum
PSO210G5817 Papaver somniferum
PSO210G7003 Papaver somniferum
PSO210G7147 Papaver somniferum
PSO339G4223 Papaver somniferum
PSO384G4074 Papaver somniferum
PSO724G0109 Papaver somniferum
QL02p061140 Quercus lobata
QL02p061178 Quercus lobata
QL05p008631 Quercus lobata
RcHm_v2.0_Chr2g0094251 Rosa chinensis
RcHm_v2.0_Chr5g0055851 Rosa chinensis
RcHm_v2.0_Chr5g0055861 Rosa chinensis
Rhsim03G0230400 Rhododendron simsii
Rhsim12G0209000 Rhododendron simsii
Rhsim13G0103900 Rhododendron simsii
Sabra01G0140300 Salix brachista
Sabra03G0036800 Salix brachista
Sabra04G0128000 Salix brachista
Sabra09G0119500 Salix brachista
SalBow6G0851 Salvia bowleyana
SalBow6G6099 Salvia bowleyana
SalBow6G6615 Salvia bowleyana
SalBow7G0369 Salvia bowleyana
Sc10g0007850 Simmondsia chinensis
Sc14g0000620 Simmondsia chinensis
Sed0011237 Sechium edule
Sed0016241 Sechium edule
Sed0021607 Sechium edule
SEGI_12392 Sequoiadendron giganteum
SEGI_12428 Sequoiadendron giganteum
SEGI_28484 Sequoiadendron giganteum
SEGI_29094 Sequoiadendron giganteum
SGA_v2.0_scaffold27G11590 Striga asiatica
SGA_v2.0_scaffold71G23876 Striga asiatica
SGA_v2.0_scaffold97G29151 Striga asiatica
SHI34005 Sapria himalayana
SMO364G0609 Selaginella moellendorffii
Solyc03g121960.3 Solanum lycopersicum
Solyc06g074680.4 Solanum lycopersicum
Solyc07g041210.3 Solanum lycopersicum
Solyc11g066710.3 Solanum lycopersicum
Sopen03g040780 Solanum pennellii
Sopen06g022330 Solanum pennellii
Sopen06g031090 Solanum pennellii
Sopen07g020480 Solanum pennellii
Sopen11g026440 Solanum pennellii
Sp5g16360 Schrenkiella parvula
Sp6g30380 Schrenkiella parvula
TAR369G0872 Trochodendron aralioides
TAR383G0544 Trochodendron aralioides
TAR626G1835 Trochodendron aralioides
THA.LOC104799356 Tarenaya hassleriana
THA.LOC104809891 Tarenaya hassleriana
THA.LOC104814810 Tarenaya hassleriana
Thecc.06G117800 Theobroma cacao
Thecc.09G081300 Theobroma cacao
Thecc.09G294200 Theobroma cacao
Thhalv10002852m.g Eutrema salsugineum
Thhalv10012888m.g Eutrema salsugineum
TPR.G16450 Trifolium pratense
TPR.G27163 Trifolium pratense
TWI32G0153 Tripterygium wilfordii
TWI79G0634 Tripterygium wilfordii
TWI79G0772 Tripterygium wilfordii
unitig_0.g887 Utricularia gibba
unitig_61.g26042 Utricularia gibba
unitig_899.g15368 Utricularia gibba
vmacro03230 Vaccinium macrocarpon
vmacro06314 Vaccinium macrocarpon
vmacro12082 Vaccinium macrocarpon
vmacro17051 Vaccinium macrocarpon
VMungo0331G0221 Vigna mungo
VMungo1215G2327 Vigna mungo
Zm00001eb100310 Zea mays
Zm00001eb118700 Zea mays
Zm00001eb148010 Zea mays
Zm00001eb314300 Zea mays
Zm00001eb331670 Zea mays
Zm00001eb342120 Zea mays

User provided reference genes

Program Settings