Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p05800 Brassica napus
A04p28990 Brassica napus
A05p08090 Brassica napus
A10p30400 Brassica napus
Aa31LG10G8950 Aethionema arabicum
Aa31LG11G6990 Aethionema arabicum
Aa31sc88G70 Aethionema arabicum
Actinidia05334 Actinidia chinensis
Actinidia28656 Actinidia chinensis
Actinidia37485 Actinidia chinensis
Ah.03g147300 Amaranthus hybridus
AL4G34810 Arabidopsis lyrata
AL5G34980 Arabidopsis lyrata
AL6G15890 Arabidopsis lyrata
Aqoxy1G00795 Aquilegia oxysepala
Aqoxy5G00307 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6P4JRH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.74J18E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7JI950 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FX6SQK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JM56EB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K02X6N Arachis hypogaea
AT2G37870 Arabidopsis thaliana
AT3G53980 Arabidopsis thaliana
AT5G05960 Arabidopsis thaliana
ATR0210G004 Amborella trichopoda
ATR0322G001 Amborella trichopoda
ATR0598G041 Amborella trichopoda
ATR0598G255 Amborella trichopoda
ATR0598G295 Amborella trichopoda
ATR0723G020 Amborella trichopoda
Atru.chr11.977 Acer truncatum
Atru.chr12.268 Acer truncatum
Atru.chr8.2092 Acer truncatum
AUR62012164 Chenopodium quinoa
AUR62022801 Chenopodium quinoa
BcaB02g08497 Brassica carinata
BcaB02g09240 Brassica carinata
BcaC02g09117 Brassica carinata
BcaC02g11917 Brassica carinata
BcaC06g32306 Brassica carinata
BolC4t22605H Brassica oleracea
BolC4t25438H Brassica oleracea
BolC4t28128H Brassica oleracea
BolC6t37365H Brassica oleracea
BolC9t59843H Brassica oleracea
BraA04t16277Z Brassica rapa
BraA05t19777Z Brassica rapa
BraA10t45079Z Brassica rapa
C04p10020 Brassica napus
C04p38610 Brassica napus
C04p66240 Brassica napus
C06p21760 Brassica napus
C09p70840 Brassica napus
CAN.G282.90 Capsicum annuum
CAN.G950.12 Capsicum annuum
CANSAT35G0577 Cannabis sativa
CANSAT56G0758 Cannabis sativa
CANSAT78G0417 Cannabis sativa
CARHR132420 Cardamine hirsuta
CARHR163880 Cardamine hirsuta
CARHR207260 Cardamine hirsuta
Carub.0004s1978 Capsella rubella
Carub.0005s2057 Capsella rubella
Carub.0006s0484 Capsella rubella
Ca_07571_v3 Cicer arietinum L.
Ca_22521_v3 Cicer arietinum L.
Cc02_g07220 Coffea canephora
Cc11_g05220 Coffea canephora
Cfa001398 Carpinus fangiana
Cfa001400 Carpinus fangiana
Cfa001401 Carpinus fangiana
Cfa021279 Carpinus fangiana
Ciclev10013132m.g Citrus clementina
Ciclev10013135m.g Citrus clementina
Ciclev10013663m.g Citrus clementina
Ciclev10018228m.g Citrus clementina
Ciclev10033080m.g Citrus clementina
CiPaw.02G188200 Carya illinoinensis
CiPaw.06G057800 Carya illinoinensis
CiPaw.10G149500 Carya illinoinensis
ClCG01G006880 Citrullus lanatus
ClCG11G006530 Citrullus lanatus
COL.COLO4_00266 Corchorus olitorius
COL.COLO4_14693 Corchorus olitorius
COL.COLO4_15112 Corchorus olitorius
COL.COLO4_15113 Corchorus olitorius
COL.COLO4_25570 Corchorus olitorius
COL.COLO4_27389 Corchorus olitorius
COL.COLO4_27552 Corchorus olitorius
Cpa.g.sc17.158 Carica papaya
Cpa.g.sc2.73 Carica papaya
CsaV3_5G017280 Cucumis sativus L.
CsaV3_6G001470 Cucumis sativus L.
CSS0001797 Camellia sinensis var. sinensis
CSS0009267 Camellia sinensis var. sinensis
CSS0010250 Camellia sinensis var. sinensis
CSS0014866 Camellia sinensis var. sinensis
CSS0015433 Camellia sinensis var. sinensis
CSS0024168 Camellia sinensis var. sinensis
CSS0025213 Camellia sinensis var. sinensis
CSS0025476 Camellia sinensis var. sinensis
CSS0048241 Camellia sinensis var. sinensis
DCAR_010426 Daucus carota
DCAR_011756 Daucus carota
Dinv07027 Davidia involucrata
Dinv16276 Davidia involucrata
Dinv37113 Davidia involucrata
Duzib093G0954 Durio zibethinus
Duzib106G0083 Durio zibethinus
Duzib106G0472 Durio zibethinus
Duzib106G0665 Durio zibethinus
Duzib106G0792 Durio zibethinus
Duzib106G0808 Durio zibethinus
Duzib106G1524 Durio zibethinus
Duzib106G1730 Durio zibethinus
Duzib106G1746 Durio zibethinus
Duzib114G0690 Durio zibethinus
Duzib114G0795 Durio zibethinus
Duzib128G0193 Durio zibethinus
Duzib128G0559 Durio zibethinus
Duzib241G0004 Durio zibethinus
Duzib251G0297 Durio zibethinus
ECA238G1249 Erigeron canadensis
ECA238G4580 Erigeron canadensis
EL10Ac2g04670 Beta vulgaris
EL10Ac6g15383 Beta vulgaris
Eucgr.B02633 Eucalyptus grandis
Eucgr.C04056 Eucalyptus grandis
Eucgr.G02049 Eucalyptus grandis
Eucgr.G02050 Eucalyptus grandis
Eucgr.G02055 Eucalyptus grandis
Eucgr.G02057 Eucalyptus grandis
Eucgr.G02998 Eucalyptus grandis
Eucgr.G03000 Eucalyptus grandis
Eucgr.K03041 Eucalyptus grandis
Eucgr.L01908 Eucalyptus grandis
FAN01G1855 Fragaria x ananassa
FAN02G3549 Fragaria x ananassa
FAN03G2801 Fragaria x ananassa
FAN05G2682 Fragaria x ananassa
FAN06G4386 Fragaria x ananassa
FAN06G4821 Fragaria x ananassa
FAN07G2128 Fragaria x ananassa
FAN09G0112 Fragaria x ananassa
FAN12G2922 Fragaria x ananassa
FAN14G3492 Fragaria x ananassa
FAN17G1096 Fragaria x ananassa
FAN19G0746 Fragaria x ananassa
FAN22G0283 Fragaria x ananassa
FvH4_4g35921 Fragaria vesca
FvH4_6g12710 Fragaria vesca
FvH4_7g23600 Fragaria vesca
Glyma.03G073500 Glycine max
Glyma.07G139400 Glycine max
Glyma.08G268400 Glycine max
Glyma.11G224900 Glycine max
Glyma.11G225000 Glycine max
Glyma.16G100100 Glycine max
Glyma.18G032300 Glycine max
Glyma.18G032400 Glycine max
Glyma.18G032500 Glycine max
Glyma.18G032600 Glycine max
Glyma.18G032700 Glycine max
Glyma.18G032800 Glycine max
Glyma.18G032900 Glycine max
Glyma.18G033100 Glycine max
Glyma.18G033200 Glycine max
Glyma.18G190000 Glycine max
Gohir.A01G144500 Gossypium hirsutum
Gohir.A05G346800 Gossypium hirsutum
Gohir.A09G161000 Gossypium hirsutum
Gohir.A10G225900 Gossypium hirsutum
Gohir.A10G225966 Gossypium hirsutum
Gohir.A10G226000 Gossypium hirsutum
Gohir.A10G227700 Gossypium hirsutum
Gohir.A10G227800 Gossypium hirsutum
Gohir.A11G328100 Gossypium hirsutum
Gohir.A12G153300 Gossypium hirsutum
Gohir.D01G136000 Gossypium hirsutum
Gohir.D01G136100 Gossypium hirsutum
Gohir.D02G148600 Gossypium hirsutum
Gohir.D04G065400 Gossypium hirsutum
Gohir.D08G102450 Gossypium hirsutum
Gohir.D09G156700 Gossypium hirsutum
Gohir.D10G238300 Gossypium hirsutum
Gohir.D10G238316 Gossypium hirsutum
Gohir.D10G241800 Gossypium hirsutum
Gohir.D11G347000 Gossypium hirsutum
Gohir.D12G156700 Gossypium hirsutum
Gorai.002G170000 Gossypium raimondii
Gorai.002G170100 Gossypium raimondii
Gorai.006G178200 Gossypium raimondii
Gorai.007G377400 Gossypium raimondii
Gorai.008G169400 Gossypium raimondii
Gorai.009G207600 Gossypium raimondii
Gorai.011G273900 Gossypium raimondii
Gorai.011G274100 Gossypium raimondii
Gorai.011G277800 Gossypium raimondii
Gorai.011G278100 Gossypium raimondii
Gorai.012G073600 Gossypium raimondii
GSVIVG01011567001 Vitis vinifera
GSVIVG01016435001 Vitis vinifera
GSVIVG01034065001 Vitis vinifera
HanXRQChr07g0202031 Helianthus annuus
HanXRQChr11g0323041 Helianthus annuus
HanXRQChr12g0377431 Helianthus annuus
HanXRQChr14g0458461 Helianthus annuus
HanXRQChr15g0469341 Helianthus annuus
Haze_10750 Corylus avellana
Haze_17152 Corylus avellana
Haze_20885 Corylus avellana
Haze_20894 Corylus avellana
Hma1.2p1_0039F.1_g024900 Hydrangea macrophylla
Hma1.2p1_1827F.1_g304440 Hydrangea macrophylla
HPP92_003400 Vanilla planifolia
HPP92_003419 Vanilla planifolia
Lalb_Chr03g0042711 Lupinus albus
Lalb_Chr13g0291901 Lupinus albus
Lj1g0021631 Lotus japonicus
Lj3A858G36 Lonicera japonica
Lj3g0003791 Lotus japonicus
Lj4g0009998 Lotus japonicus
Lj6g0004209 Lotus japonicus
Lsat_1_v5_gn_2_117100 Lactuca sativa
Lsat_1_v5_gn_5_35261 Lactuca sativa
Lsat_1_v5_gn_9_63001 Lactuca sativa
Manes.07G122502 Manihot esculenta
Manes.08G082211 Manihot esculenta
Manes.09G098600 Manihot esculenta
Manes.15G140300 Manihot esculenta
MBI13_g30066_MAGBIO Magnolia biondii
MBI13_g40630_MAGBIO Magnolia biondii
MBI19_g02936_MAGBIO Magnolia biondii
MBI19_g02937_MAGBIO Magnolia biondii
MBI19_g02938_MAGBIO Magnolia biondii
MD04G1139100 Malus domestica
MD07G1207500 Malus domestica
MD12G1154900 Malus domestica
MD13G1013800 Malus domestica
MD16G1011000 Malus domestica
Medtr7g065160 Medicago truncatula
Medtr7g065210 Medicago truncatula
Medtr8g070015 Medicago truncatula
Medtr8g070040 Medicago truncatula
MELO3C005225.2 Cucumis melo
MELO3C008252.2 Cucumis melo
Migut.F00734 Erythranthe guttata
Migut.F00735 Erythranthe guttata
MSTRG.253 Avicennia marina
MSTRG.254 Avicennia marina
Nitab4.5_0001529g0020 Nicotiana tabacum
Nitab4.5_0002822g0020 Nicotiana tabacum
Nitab4.5_0003241g0030 Nicotiana tabacum
Nitab4.5_0008180g0010 Nicotiana tabacum
Nn2g11291 Nelumbo nucifera
Nn4g24640 Nelumbo nucifera
Oeu021129.1 Olea europaea
Oeu024855.1 Olea europaea
Oeu035127.1 Olea europaea
Oeu044065.1 Olea europaea
Os01g0849000 Oryza sativa ssp. japonica
Os04g0415800 Oryza sativa ssp. japonica
Os05g0160300 Oryza sativa ssp. japonica
Peaxi162Scf00140g00139 Petunia axillaris
Peaxi162Scf00349g00210 Petunia axillaris
Peaxi162Scf00611g00316 Petunia axillaris
PGR004G0216 Punica granatum
PGR142G1695 Punica granatum
PGR142G2952 Punica granatum
PGSC0003DMG400021691 Solanum tuberosum
PGSC0003DMG400028909 Solanum tuberosum
PGSC0003DMG400032487 Solanum tuberosum
Phvul.003G282100 Phaseolus vulgaris
Phvul.008G113900 Phaseolus vulgaris
Phvul.010G005500 Phaseolus vulgaris
Potri.008G061800 Populus trichocarpa
Potri.008G141000 Populus trichocarpa
Potri.010G100600 Populus trichocarpa
Potri.010G196300 Populus trichocarpa
Potri.016G104300 Populus trichocarpa
Prupe.1G339700 Prunus persica
Prupe.2G242600 Prunus persica
Prupe.2G242700 Prunus persica
Prupe.2G242800 Prunus persica
Prupe.6G264700 Prunus persica
Psat0s558g0080 Pisum sativum
Psat3g134000 Pisum sativum
Psat4g114560 Pisum sativum
PSO063G2535 Papaver somniferum
PSO339G2110 Papaver somniferum
PSO384G3674 Papaver somniferum
PSO421G0715 Papaver somniferum
PSO832G4409 Papaver somniferum
QL03p040646 Quercus lobata
QL07p028299 Quercus lobata
QL08p062026 Quercus lobata
QL08p062035 Quercus lobata
QL08p062055 Quercus lobata
RcHm_v2.0_Chr1g0368841 Rosa chinensis
RcHm_v2.0_Chr3g0464631 Rosa chinensis
RcHm_v2.0_Chr4g0445531 Rosa chinensis
RcHm_v2.0_Chr5g0022311 Rosa chinensis
RcHm_v2.0_Chr5g0022411 Rosa chinensis
RcHm_v2.0_Chr5g0069381 Rosa chinensis
RcHm_v2.0_Chr6g0273821 Rosa chinensis
RcHm_v2.0_Chr6g0273841 Rosa chinensis
Rhsim03G0137700 Rhododendron simsii
Rhsim09G0082600 Rhododendron simsii
Rhsim09G0170400 Rhododendron simsii
Sabra08G0045400 Salix brachista
Sabra08G0107000 Salix brachista
Sabra10G0073100 Salix brachista
Sabra10G0150900 Salix brachista
SalBow5G4935 Salvia bowleyana
SalBow6G2087 Salvia bowleyana
SalBow6G3084 Salvia bowleyana
SalBow6G5623 Salvia bowleyana
SalBow6G6875 Salvia bowleyana
Sc07g0006970 Simmondsia chinensis
Sc25g0000330 Simmondsia chinensis
Sed0012065 Sechium edule
Sed0015262 Sechium edule
Sed0015379 Sechium edule
SEGI_18106 Sequoiadendron giganteum
SEGI_30227 Sequoiadendron giganteum
SGA_v2.0_scaffold10G05313 Striga asiatica
Solyc03g079880.4 Solanum lycopersicum
Solyc05g041140.4 Solanum lycopersicum
Solyc06g036230.4 Solanum lycopersicum
Solyc10g018480.1 Solanum lycopersicum
Sopen03g027300 Solanum pennellii
Sopen06g012020 Solanum pennellii
Sp4g20180 Schrenkiella parvula
Sp5g08420 Schrenkiella parvula
Sp6g36940 Schrenkiella parvula
TAR622G0849 Trochodendron aralioides
TAR633G1255 Trochodendron aralioides
TAR636G2247 Trochodendron aralioides
THA.LOC104806540 Tarenaya hassleriana
THA.LOC104807011 Tarenaya hassleriana
THA.LOC104823401 Tarenaya hassleriana
THA.LOC104826866 Tarenaya hassleriana
Thecc.02G300800 Theobroma cacao
Thecc.05G028500 Theobroma cacao
Thecc.05G028800 Theobroma cacao
Thecc.10G031100 Theobroma cacao
Thecc.10G031200 Theobroma cacao
Thecc.10G103100 Theobroma cacao
Thhalv10010835m.g Eutrema salsugineum
Thhalv10015048m.g Eutrema salsugineum
Thhalv10017444m.g Eutrema salsugineum
TPR.G24806 Trifolium pratense
TPR.G34920 Trifolium pratense
TPR.G34927 Trifolium pratense
TWI53G2099 Tripterygium wilfordii
TWI74G0455 Tripterygium wilfordii
TWI74G1225 Tripterygium wilfordii
TWI77G0303 Tripterygium wilfordii
vmacro10195 Vaccinium macrocarpon
vmacro10196 Vaccinium macrocarpon
vmacro10758 Vaccinium macrocarpon
VMungo0251G2312 Vigna mungo
VMungo0331G2015 Vigna mungo
VMungo1383G3336 Vigna mungo
Zm00001eb083610 Zea mays
Zm00001eb090910 Zea mays
Zm00001eb131270 Zea mays
Zm00001eb147950 Zea mays
Zm00001eb189310 Zea mays

User provided reference genes

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