Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p25670 Brassica napus
A02p16170 Brassica napus
A06p19130 Brassica napus
A07p36250 Brassica napus
Aa31LG4G11010 Aethionema arabicum
Aa31LG4G17150 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4530 Anthoceros agrestis
Actinidia17808 Actinidia chinensis
Actinidia25580 Actinidia chinensis
Actinidia25581 Actinidia chinensis
Actinidia31187 Actinidia chinensis
Actinidia33101 Actinidia chinensis
AL2G29070 Arabidopsis lyrata
AL5G27980 Arabidopsis lyrata
Aqoxy3G03306 Aquilegia oxysepala
Aqoxy5G01585 Aquilegia oxysepala
Aqoxy5G03395 Aquilegia oxysepala
Aqoxy7G00969 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.075A5E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5BLU0Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.78AWB5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C8GL8Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H9YH0C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HJGN48 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N42VFA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V0CC5T Arachis hypogaea
AT1G69800 Arabidopsis thaliana
AT3G48530 Arabidopsis thaliana
ATR0561G043 Amborella trichopoda
ATR0561G208 Amborella trichopoda
ATR0568G042 Amborella trichopoda
ATR1120G113 Amborella trichopoda
Atru.chr11.1894 Acer truncatum
Atru.chr11.1908 Acer truncatum
Atru.chr5.3048 Acer truncatum
Atru.chr9.1046 Acer truncatum
Atru.chr9.1109 Acer truncatum
Atru.chr9.1110 Acer truncatum
AUR62005737 Chenopodium quinoa
AUR62011299 Chenopodium quinoa
AUR62016759 Chenopodium quinoa
AUR62025936 Chenopodium quinoa
AUR62028824 Chenopodium quinoa
AUR62029622 Chenopodium quinoa
BcaB01g00800 Brassica carinata
BcaB03g14759 Brassica carinata
BcaB05g23010 Brassica carinata
BcaB05g24489 Brassica carinata
BcaC03g15132 Brassica carinata
BcaC07g39340 Brassica carinata
BcaC08g46427 Brassica carinata
BcaC09g49874 Brassica carinata
BolC1t03130H Brassica oleracea
BolC2t08757H Brassica oleracea
BolC6t39433H Brassica oleracea
BolC8t49987H Brassica oleracea
BraA01t02448Z Brassica rapa
BraA02t06676Z Brassica rapa
BraA06t24997Z Brassica rapa
BraA07t31197Z Brassica rapa
C01p32240 Brassica napus
C02p26950 Brassica napus
C06p43610 Brassica napus
C08p23570 Brassica napus
CAN.G352.18 Capsicum annuum
CAN.G38.23 Capsicum annuum
CANSAT80G0140 Cannabis sativa
CANSAT80G1307 Cannabis sativa
CARHR062870 Cardamine hirsuta
CARHR157330 Cardamine hirsuta
Carub.0002s1650 Capsella rubella
Carub.0005s1472 Capsella rubella
Ca_00908_v3 Cicer arietinum L.
Ca_04749_v3 Cicer arietinum L.
Ca_15360_v3 Cicer arietinum L.
CBR_g22419 Chara braunii
CBR_g50398 Chara braunii
Cc04_g10020 Coffea canephora
Cc11_g13370 Coffea canephora
CDE02G3087 Ceratophyllum demersum
CDE04G0971 Ceratophyllum demersum
CDE04G2978 Ceratophyllum demersum
CDE05G1334 Ceratophyllum demersum
CDE06G0312 Ceratophyllum demersum
Cfa009018 Carpinus fangiana
Cfa018831 Carpinus fangiana
Ciclev10020027m.g Citrus clementina
Ciclev10033729m.g Citrus clementina
CiPaw.05G138800 Carya illinoinensis
CiPaw.06G134200 Carya illinoinensis
CiPaw.11G008300 Carya illinoinensis
ClCG05G024530 Citrullus lanatus
ClCG06G017850 Citrullus lanatus
ClCG11G004270 Citrullus lanatus
COL.COLO4_23038 Corchorus olitorius
COL.COLO4_25960 Corchorus olitorius
COL.COLO4_28099 Corchorus olitorius
Cpa.g.sc13.126 Carica papaya
Cpa.g.sc183.19 Carica papaya
Cpa.g.sc62.171 Carica papaya
CsaV3_1G000600 Cucumis sativus L.
CsaV3_1G045230 Cucumis sativus L.
CsaV3_2G014900 Cucumis sativus L.
CsaV3_5G032420 Cucumis sativus L.
CSS0002275 Camellia sinensis var. sinensis
CSS0014423 Camellia sinensis var. sinensis
CSS0017018 Camellia sinensis var. sinensis
CSS0031290 Camellia sinensis var. sinensis
DCAR_005229 Daucus carota
DCAR_007137 Daucus carota
DCAR_021615 Daucus carota
DCAR_022984 Daucus carota
DCAR_026227 Daucus carota
DCAR_027391 Daucus carota
DCAR_027392 Daucus carota
DCAR_031047 Daucus carota
DCAR_032383 Daucus carota
Dinv11166 Davidia involucrata
Dinv24966 Davidia involucrata
Dinv34211 Davidia involucrata
Duzib052G1128 Durio zibethinus
Duzib205G0683 Durio zibethinus
Duzib248G0957 Durio zibethinus
Duzib251G0381 Durio zibethinus
ECA232G3143 Erigeron canadensis
ECA234G2638 Erigeron canadensis
ECA234G4844 Erigeron canadensis
ECA246G1643 Erigeron canadensis
ECA246G2326 Erigeron canadensis
EL10Ac6g13161 Beta vulgaris
EL10Ac7g17465 Beta vulgaris
EL10Ac9g21705 Beta vulgaris
EL10As4g23389 Beta vulgaris
Eucgr.G02534 Eucalyptus grandis
Eucgr.K02734 Eucalyptus grandis
FAN04G1471 Fragaria x ananassa
FAN07G0115 Fragaria x ananassa
FAN07G0918 Fragaria x ananassa
FAN07G2320 Fragaria x ananassa
FAN08G1498 Fragaria x ananassa
FAN12G0099 Fragaria x ananassa
FAN12G1673 Fragaria x ananassa
FAN13G1951 Fragaria x ananassa
FAN17G1528 Fragaria x ananassa
FAN18G1243 Fragaria x ananassa
FAN18G2951 Fragaria x ananassa
FAN22G2407 Fragaria x ananassa
FAN24G3299 Fragaria x ananassa
FvH4_2g09270 Fragaria vesca
FvH4_2g09803 Fragaria vesca
FvH4_4g31760 Fragaria vesca
FvH4_4g31780 Fragaria vesca
FvH4_5g08190 Fragaria vesca
FvH4_c17g00030 Fragaria vesca
Glyma.01G043400 Glycine max
Glyma.02G020200 Glycine max
Glyma.04G011966 Glycine max
Glyma.04G012032 Glycine max
Glyma.04G195300 Glycine max
Glyma.05G047700 Glycine max
Glyma.06G011800 Glycine max
Glyma.06G170700 Glycine max
Glyma.17G129600 Glycine max
Gohir.A03G195700 Gossypium hirsutum
Gohir.A07G051400 Gossypium hirsutum
Gohir.A11G036200 Gossypium hirsutum
Gohir.A12G189100 Gossypium hirsutum
Gohir.A13G071600 Gossypium hirsutum
Gohir.D02G216800 Gossypium hirsutum
Gohir.D07G055800 Gossypium hirsutum
Gohir.D11G039700 Gossypium hirsutum
Gohir.D12G191400 Gossypium hirsutum
Gohir.D13G071900 Gossypium hirsutum
Gorai.001G059200 Gossypium raimondii
Gorai.005G244800 Gossypium raimondii
Gorai.007G042700 Gossypium raimondii
Gorai.008G205700 Gossypium raimondii
Gorai.013G082400 Gossypium raimondii
GSVIVG01008534001 Vitis vinifera
GSVIVG01020059001 Vitis vinifera
GSVIVG01023804001 Vitis vinifera
HanXRQChr05g0155061 Helianthus annuus
HanXRQChr08g0236781 Helianthus annuus
HanXRQChr09g0273111 Helianthus annuus
HanXRQChr10g0305051 Helianthus annuus
HanXRQChr17g0544801 Helianthus annuus
Haze_07224 Corylus avellana
Haze_12052 Corylus avellana
Hma1.2p1_1966F.1_g309395 Hydrangea macrophylla
Hma1.2p1_1966F.1_g309410 Hydrangea macrophylla
HPP92_003542 Vanilla planifolia
HPP92_003561 Vanilla planifolia
HPP92_003562 Vanilla planifolia
HPP92_007637 Vanilla planifolia
HPP92_007638 Vanilla planifolia
HPP92_008090 Vanilla planifolia
Hund02438 Selenicereus undatus
Lalb_Chr04g0256281 Lupinus albus
Lalb_Chr04g0256291 Lupinus albus
Lalb_Chr08g0237101 Lupinus albus
Lalb_Chr08g0246651 Lupinus albus
Lalb_Chr13g0297271 Lupinus albus
Lalb_Chr17g0340421 Lupinus albus
Lj1g0004941 Lotus japonicus
Lj2g0016570 Lotus japonicus
Lj3A1041T82 Lonicera japonica
Lj4g0020824 Lotus japonicus
Lj5A98T57 Lonicera japonica
Lsat_1_v5_gn_3_51321 Lactuca sativa
Lsat_1_v5_gn_4_80361 Lactuca sativa
Lsat_1_v5_gn_5_119281 Lactuca sativa
Lsat_1_v5_gn_5_13660 Lactuca sativa
Manes.01G189100 Manihot esculenta
Manes.04G089510 Manihot esculenta
Manes.06G118900 Manihot esculenta
Mapoly0009s0230 Marchantia polymorpha
Mapoly0027s0183 Marchantia polymorpha
Mapoly0118s0039 Marchantia polymorpha
MBI01_g12908_MAGBIO Magnolia biondii
MBI07_g27360_MAGBIO Magnolia biondii
MBI16_g08801_MAGBIO Magnolia biondii
MBI16_g08802_MAGBIO Magnolia biondii
MBI16_g08803_MAGBIO Magnolia biondii
MD06G1142700 Malus domestica
MD13G1077700 Malus domestica
MD13G1077800 Malus domestica
MD14G1157900 Malus domestica
MD16G1077600 Malus domestica
Medtr3g116850 Medicago truncatula
Medtr4g103550 Medicago truncatula
Medtr5g038570 Medicago truncatula
MELO3C010151.2 Cucumis melo
MELO3C012073.2 Cucumis melo
MELO3C023309.2 Cucumis melo
MELO3C026210.2 Cucumis melo
Migut.E00110 Erythranthe guttata
Migut.I00503 Erythranthe guttata
MSTRG.11280 Avicennia marina
MSTRG.13404 Avicennia marina
MSTRG.22903 Avicennia marina
MSTRG.2356 Avicennia marina
Nitab4.5_0000141g0350 Nicotiana tabacum
Nitab4.5_0000879g0060 Nicotiana tabacum
Nitab4.5_0002752g0140 Nicotiana tabacum
Nitab4.5_0005560g0020 Nicotiana tabacum
Nitab4.5_0006585g0020 Nicotiana tabacum
Nitab4.5_0007114g0010 Nicotiana tabacum
Nn3g16485 Nelumbo nucifera
Nn3g17147 Nelumbo nucifera
Nn4g23072 Nelumbo nucifera
Nn5g29666 Nelumbo nucifera
Oeu000634.1 Olea europaea
Oeu005008.1 Olea europaea
Oeu018538.1 Olea europaea
Os01g0586600 Oryza sativa ssp. japonica
Os01g0633400 Oryza sativa ssp. japonica
Os01g0921500 Oryza sativa ssp. japonica
Os04g0380000 Oryza sativa ssp. japonica
Os04g0382300 Oryza sativa ssp. japonica
Os05g0364650 Oryza sativa ssp. japonica
Peaxi162Scf00026g02513 Petunia axillaris
Peaxi162Scf00089g00622 Petunia axillaris
Peaxi162Scf00209g00231 Petunia axillaris
Peaxi162Scf00536g00118 Petunia axillaris
PGR044G0132 Punica granatum
PGR119G0661 Punica granatum
PGR142G3923 Punica granatum
PGSC0003DMG400000861 Solanum tuberosum
PGSC0003DMG400015241 Solanum tuberosum
Phvul.002G089600 Phaseolus vulgaris
Phvul.003G210600 Phaseolus vulgaris
Phvul.009G023200 Phaseolus vulgaris
Phvul.009G166800 Phaseolus vulgaris
Potri.009G118700 Populus trichocarpa
Potri.012G097000 Populus trichocarpa
Potri.015G094700 Populus trichocarpa
Potri.017G053600 Populus trichocarpa
Pp3c16_13330 Physcomitrium patens
Pp3c26_7290 Physcomitrium patens
Pp3c3_13660 Physcomitrium patens
Prupe.1G269400 Prunus persica
Prupe.5G152000 Prunus persica
Prupe.8G093300 Prunus persica
Prupe.8G093800 Prunus persica
Psat0s3911g0120 Pisum sativum
Psat1g002200 Pisum sativum
Psat2g047320 Pisum sativum
Psat2g085720 Pisum sativum
Psat2g101640 Pisum sativum
Psat2g120160 Pisum sativum
Psat2g132640 Pisum sativum
Psat2g146280 Pisum sativum
Psat4g058440 Pisum sativum
Psat4g106720 Pisum sativum
Psat5g004120 Pisum sativum
Psat7g001560 Pisum sativum
PSO063G4202 Papaver somniferum
PSO782G1798 Papaver somniferum
PSO832G3125 Papaver somniferum
QL03p065432 Quercus lobata
QL10p003695 Quercus lobata
QL10p003722 Quercus lobata
QL11p044446 Quercus lobata
RcHm_v2.0_Chr4g0440361 Rosa chinensis
RcHm_v2.0_Chr4g0440371 Rosa chinensis
RcHm_v2.0_Chr4g0440381 Rosa chinensis
RcHm_v2.0_Chr7g0190321 Rosa chinensis
Rhsim05G0073300 Rhododendron simsii
Rhsim08G0189400 Rhododendron simsii
Rhsim12G0130600 Rhododendron simsii
Rhsim12G0174100 Rhododendron simsii
RhsimUnG0231700 Rhododendron simsii
Sabra09G0091000 Salix brachista
Sabra12G0071000 Salix brachista
Sabra15G0116100 Salix brachista
Sabra17G0045600 Salix brachista
SalBow5G5718 Salvia bowleyana
SalBow8G5527 Salvia bowleyana
Sc04g0008400 Simmondsia chinensis
Sc22g0003860 Simmondsia chinensis
Sed0005708 Sechium edule
Sed0010202 Sechium edule
Sed0019362 Sechium edule
Sed0021117 Sechium edule
Sed0025327 Sechium edule
SEGI_06706 Sequoiadendron giganteum
SEGI_22285 Sequoiadendron giganteum
SEGI_38493 Sequoiadendron giganteum
SGA_v2.0_scaffold215G42330 Striga asiatica
SGA_v2.0_scaffold63G21667 Striga asiatica
SMO358G0416 Selaginella moellendorffii
SMO367G0097 Selaginella moellendorffii
SMO367G0709 Selaginella moellendorffii
Solyc01g010700.3 Solanum lycopersicum
Solyc03g111310.3 Solanum lycopersicum
Sopen01g006320 Solanum pennellii
Sopen03g030440 Solanum pennellii
Sp5g13450 Schrenkiella parvula
Sp5g24920 Schrenkiella parvula
TAR371G0100 Trochodendron aralioides
TAR374G0301 Trochodendron aralioides
THA.LOC104821515 Tarenaya hassleriana
THA.LOC104822927 Tarenaya hassleriana
THA.LOC104825014 Tarenaya hassleriana
Thecc.02G082700 Theobroma cacao
Thecc.02G353700 Theobroma cacao
Thecc.03G128100 Theobroma cacao
Thhalv10010404m.g Eutrema salsugineum
Thhalv10018543m.g Eutrema salsugineum
TPR.G13768 Trifolium pratense
TPR.G38092 Trifolium pratense
TPR.G8684 Trifolium pratense
TWI14G0083 Tripterygium wilfordii
TWI31G1445 Tripterygium wilfordii
TWI39G0196 Tripterygium wilfordii
TWI75G0813 Tripterygium wilfordii
unitig_22.g5542 Utricularia gibba
unitig_26.g10191 Utricularia gibba
unitig_744.g24644 Utricularia gibba
unitig_8.g3949 Utricularia gibba
vmacro16332 Vaccinium macrocarpon
vmacro16675 Vaccinium macrocarpon
vmacro17480 Vaccinium macrocarpon
vmacro19201 Vaccinium macrocarpon
VMungo1215G0164 Vigna mungo
VMungo1215G1576 Vigna mungo
VMungo1309G2181 Vigna mungo
VMungo1309G2948 Vigna mungo
Zm00001eb085680 Zea mays
Zm00001eb159030 Zea mays
Zm00001eb160610 Zea mays
Zm00001eb364400 Zea mays

User provided reference genes

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