Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p20510 Brassica napus
A05p30280 Brassica napus
A08p03750 Brassica napus
A09p30500 Brassica napus
Aa31LG10G4300 Aethionema arabicum
Aa31LG3G14000 Aethionema arabicum
Aa31LG8G6100 Aethionema arabicum
Actinidia00424 Actinidia chinensis
Actinidia03803 Actinidia chinensis
Actinidia08282 Actinidia chinensis
Actinidia12930 Actinidia chinensis
Actinidia16469 Actinidia chinensis
Ah.01g017990 Amaranthus hybridus
Ah.11g043040 Amaranthus hybridus
AL1G57200 Arabidopsis lyrata
AL3G32720 Arabidopsis lyrata
AL6G41270 Arabidopsis lyrata
Aqoxy5G01173 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.93FZ59 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BBW5IA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H4HZRI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P9E96K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RL2A2D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V8PY6L Arachis hypogaea
AT1G49750 Arabidopsis thaliana
AT3G19320 Arabidopsis thaliana
AT4G06744 Arabidopsis thaliana
ATR0724G021 Amborella trichopoda
Atru.chr13.743 Acer truncatum
Atru.chr5.2606 Acer truncatum
Atru.chr5.2608 Acer truncatum
AUR62010265 Chenopodium quinoa
AUR62013246 Chenopodium quinoa
AUR62038770 Chenopodium quinoa
AUR62038805 Chenopodium quinoa
BcaB01g01335 Brassica carinata
BcaB02g11103 Brassica carinata
BcaB04g17309 Brassica carinata
BcaB06g25985 Brassica carinata
BcaC04g20868 Brassica carinata
BcaC05g27477 Brassica carinata
BcaC05g28499 Brassica carinata
BcaC07g37024 Brassica carinata
BolC5t32168H Brassica oleracea
BolC5t32169H Brassica oleracea
BolC5t33300H Brassica oleracea
BolC8t47186H Brassica oleracea
BolC9t56690H Brassica oleracea
BraA05t20956Z Brassica rapa
BraA05t21866Z Brassica rapa
BraA08t32403Z Brassica rapa
BraA09t38620Z Brassica rapa
C05p34400 Brassica napus
C05p45800 Brassica napus
C08p03900 Brassica napus
C09p38400 Brassica napus
CAN.G1030.37 Capsicum annuum
CAN.G1231.21 Capsicum annuum
CAN.G165.13 Capsicum annuum
CAN.G342.5 Capsicum annuum
CAN.G95.4 Capsicum annuum
CANSAT25G0917 Cannabis sativa
CANSAT25G1097 Cannabis sativa
CANSAT25G1379 Cannabis sativa
CANSAT25G1450 Cannabis sativa
CARHR039800 Cardamine hirsuta
CARHR094720 Cardamine hirsuta
CARHR294470 Cardamine hirsuta
Carub.0001s3896 Capsella rubella
Carub.0003s1915 Capsella rubella
Carub.0006s2643 Capsella rubella
Ca_13272_v3 Cicer arietinum L.
Ca_18721_v3 Cicer arietinum L.
Ca_18722_v3 Cicer arietinum L.
Cc02_g19090 Coffea canephora
Cc07_g06280 Coffea canephora
Cc07_g06320 Coffea canephora
Cc10_g04800 Coffea canephora
CDE01G0097 Ceratophyllum demersum
CDE04G0228 Ceratophyllum demersum
CDE04G3114 Ceratophyllum demersum
CDE06G2271 Ceratophyllum demersum
CDE06G2616 Ceratophyllum demersum
CDE07G1888 Ceratophyllum demersum
Cfa004553 Carpinus fangiana
Cfa004554 Carpinus fangiana
Cfa004556 Carpinus fangiana
Cfa009960 Carpinus fangiana
Cfa019052 Carpinus fangiana
Cfa021098 Carpinus fangiana
Cfa021248 Carpinus fangiana
Cfa021249 Carpinus fangiana
Ciclev10003526m.g Citrus clementina
Ciclev10028242m.g Citrus clementina
Ciclev10028712m.g Citrus clementina
CiPaw.05G009100 Carya illinoinensis
CiPaw.06G170700 Carya illinoinensis
CiPaw.06G170800 Carya illinoinensis
CiPaw.15G053300 Carya illinoinensis
CiPaw.15G053400 Carya illinoinensis
CiPaw.16G038600 Carya illinoinensis
ClCG02G006170 Citrullus lanatus
ClCG02G006180 Citrullus lanatus
ClCG05G010190 Citrullus lanatus
ClCG05G010210 Citrullus lanatus
ClCG05G020150 Citrullus lanatus
ClCG08G016140 Citrullus lanatus
COL.COLO4_10124 Corchorus olitorius
COL.COLO4_10125 Corchorus olitorius
COL.COLO4_32620 Corchorus olitorius
COL.COLO4_32621 Corchorus olitorius
Cpa.g.sc200.17 Carica papaya
Cpa.g.sc200.18 Carica papaya
Cpa.g.sc21.160 Carica papaya
CsaV3_2G026480 Cucumis sativus L.
CsaV3_3G018310 Cucumis sativus L.
CsaV3_3G018330 Cucumis sativus L.
CsaV3_4G034580 Cucumis sativus L.
CsaV3_7G008350 Cucumis sativus L.
CsaV3_7G008360 Cucumis sativus L.
CSS0021545 Camellia sinensis var. sinensis
CSS0049364 Camellia sinensis var. sinensis
DCAR_003615 Daucus carota
DCAR_010865 Daucus carota
DCAR_012790 Daucus carota
Dinv15744 Davidia involucrata
Dinv15745 Davidia involucrata
Dinv39277 Davidia involucrata
Dinv39278 Davidia involucrata
Dinv42177 Davidia involucrata
Duzib052G0865 Durio zibethinus
Duzib093G0580 Durio zibethinus
Duzib093G1857 Durio zibethinus
Duzib116G0822 Durio zibethinus
Duzib132G0631 Durio zibethinus
Duzib132G0796 Durio zibethinus
Duzib248G0726 Durio zibethinus
Duzib248G1377 Durio zibethinus
ECA232G3077 Erigeron canadensis
ECA234G0062 Erigeron canadensis
ECA246G3498 Erigeron canadensis
EL10Ac9g22313 Beta vulgaris
EL10As7g23777 Beta vulgaris
Eucgr.F02313 Eucalyptus grandis
Eucgr.G01385 Eucalyptus grandis
Eucgr.G01566 Eucalyptus grandis
Eucgr.I00883 Eucalyptus grandis
Eucgr.I00886 Eucalyptus grandis
FAN15G0344 Fragaria x ananassa
FAN15G0758 Fragaria x ananassa
FAN15G2618 Fragaria x ananassa
FAN20G2355 Fragaria x ananassa
FAN20G2989 Fragaria x ananassa
FAN20G3122 Fragaria x ananassa
FAN24G1767 Fragaria x ananassa
FAN24G3454 Fragaria x ananassa
FAN27G1545 Fragaria x ananassa
FAN27G2331 Fragaria x ananassa
FvH4_2g05530 Fragaria vesca
FvH4_2g05540 Fragaria vesca
FvH4_2g33930 Fragaria vesca
Glyma.01G244600 Glycine max
Glyma.07G215700 Glycine max
Glyma.07G215900 Glycine max
Glyma.11G000600 Glycine max
Glyma.14G085400 Glycine max
Glyma.17G239300 Glycine max
Glyma.20G012900 Glycine max
Gohir.A01G007400 Gossypium hirsutum
Gohir.A01G122000 Gossypium hirsutum
Gohir.A01G122100 Gossypium hirsutum
Gohir.A03G187300 Gossypium hirsutum
Gohir.A03G187400 Gossypium hirsutum
Gohir.A04G119900 Gossypium hirsutum
Gohir.D01G007500 Gossypium hirsutum
Gohir.D01G109400 Gossypium hirsutum
Gohir.D01G109500 Gossypium hirsutum
Gohir.D02G208100 Gossypium hirsutum
Gohir.D02G208200 Gossypium hirsutum
Gohir.D04G161500 Gossypium hirsutum
Gorai.002G008600 Gossypium raimondii
Gorai.002G133900 Gossypium raimondii
Gorai.002G134000 Gossypium raimondii
Gorai.005G236100 Gossypium raimondii
Gorai.005G236200 Gossypium raimondii
Gorai.012G149500 Gossypium raimondii
GSVIVG01009442001 Vitis vinifera
GSVIVG01031700001 Vitis vinifera
GSVIVG01031702001 Vitis vinifera
HanXRQChr04g0096361 Helianthus annuus
HanXRQChr10g0301661 Helianthus annuus
HanXRQChr10g0301691 Helianthus annuus
HanXRQChr10g0302021 Helianthus annuus
HanXRQChr10g0302051 Helianthus annuus
HanXRQChr16g0515021 Helianthus annuus
Haze_08722 Corylus avellana
Haze_10125 Corylus avellana
Haze_10126 Corylus avellana
Haze_10127 Corylus avellana
Haze_10130 Corylus avellana
Haze_10135 Corylus avellana
Haze_18060 Corylus avellana
Haze_18061 Corylus avellana
Haze_18066 Corylus avellana
Haze_18067 Corylus avellana
Haze_27753 Corylus avellana
Hma1.2p1_0474F.1_g160610 Hydrangea macrophylla
Hma1.2p1_0634F.1_g193060 Hydrangea macrophylla
HPP92_011398 Vanilla planifolia
HPP92_026153 Vanilla planifolia
Lalb_Chr04g0258701 Lupinus albus
Lalb_Chr05g0219371 Lupinus albus
Lalb_Chr05g0219381 Lupinus albus
Lalb_Chr09g0328481 Lupinus albus
Lalb_Chr14g0368501 Lupinus albus
Lj4C63T13 Lonicera japonica
Lj4g0010331 Lotus japonicus
Lj4g0019492 Lotus japonicus
Lj5g0015720 Lotus japonicus
Lj5P212T66 Lonicera japonica
Lsat_1_v5_gn_5_114061 Lactuca sativa
Lsat_1_v5_gn_5_115981 Lactuca sativa
Lsat_1_v5_gn_5_116021 Lactuca sativa
Lsat_1_v5_gn_5_116101 Lactuca sativa
Lsat_1_v5_gn_5_116141 Lactuca sativa
Lsat_1_v5_gn_6_112561 Lactuca sativa
Manes.05G176600 Manihot esculenta
Manes.05G176700 Manihot esculenta
Manes.07G067000 Manihot esculenta
Manes.07G076200 Manihot esculenta
Manes.07G076500 Manihot esculenta
Manes.10G076975 Manihot esculenta
Manes.18G040900 Manihot esculenta
MBI16_g01588_MAGBIO Magnolia biondii
MD00G1014300 Malus domestica
MD05G1086600 Malus domestica
MD05G1086700 Malus domestica
MD08G1095000 Malus domestica
MD15G1078100 Malus domestica
Medtr1g018910 Medicago truncatula
Medtr4g085480 Medicago truncatula
Medtr4g485550 Medicago truncatula
Medtr6g486280 Medicago truncatula
MELO3C010838.2 Cucumis melo
MELO3C016775.2 Cucumis melo
MELO3C018471.2 Cucumis melo
MELO3C018472.2 Cucumis melo
MELO3C019529.2 Cucumis melo
MELO3C019537.2 Cucumis melo
Migut.B00371 Erythranthe guttata
Migut.C00537 Erythranthe guttata
Migut.H00407 Erythranthe guttata
MSTRG.1058 Avicennia marina
MSTRG.20174 Avicennia marina
MSTRG.23723 Avicennia marina
MSTRG.24347 Avicennia marina
MSTRG.2863 Avicennia marina
Nitab4.5_0000604g0070 Nicotiana tabacum
Nitab4.5_0001396g0030 Nicotiana tabacum
Nitab4.5_0002003g0050 Nicotiana tabacum
Nitab4.5_0002543g0150 Nicotiana tabacum
Nitab4.5_0003771g0020 Nicotiana tabacum
Nitab4.5_0004730g0040 Nicotiana tabacum
Nitab4.5_0006411g0020 Nicotiana tabacum
Nitab4.5_0011577g0010 Nicotiana tabacum
Nn1g04754 Nelumbo nucifera
Nn1g04756 Nelumbo nucifera
Nn5g30379 Nelumbo nucifera
Nn5g30383 Nelumbo nucifera
Oeu054790.1 Olea europaea
Os02g0616100 Oryza sativa ssp. japonica
Os04g0505200 Oryza sativa ssp. japonica
Os04g0670100 Oryza sativa ssp. japonica
Os06g0704500 Oryza sativa ssp. japonica
Peaxi162Scf00003g00245 Petunia axillaris
Peaxi162Scf00016g02252 Petunia axillaris
Peaxi162Scf00032g03116 Petunia axillaris
Peaxi162Scf00121g00003 Petunia axillaris
Peaxi162Scf00800g00034 Petunia axillaris
Peaxi162Scf00800g00035 Petunia axillaris
PGR004G0551 Punica granatum
PGR031G2019 Punica granatum
PGR042G1822 Punica granatum
PGR042G2774 Punica granatum
PGR042G2847 Punica granatum
PGSC0003DMG400006226 Solanum tuberosum
PGSC0003DMG400008036 Solanum tuberosum
PGSC0003DMG400025480 Solanum tuberosum
PGSC0003DMG400025939 Solanum tuberosum
Phvul.001G024400 Phaseolus vulgaris
Phvul.002G054000 Phaseolus vulgaris
Phvul.002G092200 Phaseolus vulgaris
Phvul.002G092300 Phaseolus vulgaris
Potri.001G302500 Populus trichocarpa
Potri.009G098601 Populus trichocarpa
Potri.009G098700 Populus trichocarpa
Potri.014G024300 Populus trichocarpa
Prupe.1G431200 Prunus persica
Prupe.8G131300 Prunus persica
Prupe.8G131400 Prunus persica
Prupe.8G131500 Prunus persica
Psat6g014680 Pisum sativum
Psat6g047960 Pisum sativum
Psat7g127120 Pisum sativum
Psat7g127160 Pisum sativum
PSO170G5426 Papaver somniferum
PSO210G7665 Papaver somniferum
QL02p004069 Quercus lobata
QL02p004101 Quercus lobata
QL02p004117 Quercus lobata
QL11p034394 Quercus lobata
QL11p034405 Quercus lobata
QL11p034421 Quercus lobata
QL11p034446 Quercus lobata
QL11p034450 Quercus lobata
QL11p034494 Quercus lobata
QL11p034500 Quercus lobata
RcHm_v2.0_Chr4g0387761 Rosa chinensis
RcHm_v2.0_Chr6g0255781 Rosa chinensis
RcHm_v2.0_Chr6g0255841 Rosa chinensis
RcHm_v2.0_Chr6g0255851 Rosa chinensis
RcHm_v2.0_Chr6g0308481 Rosa chinensis
Rhsim07G0225800 Rhododendron simsii
Sabra09G0075300 Salix brachista
Sabra14G0016500 Salix brachista
Sabra16G0190300 Salix brachista
SalBow6G1612 Salvia bowleyana
SalBow7G4309 Salvia bowleyana
Sc08g0001630 Simmondsia chinensis
Sc09g0008980 Simmondsia chinensis
Sc15g0005910 Simmondsia chinensis
Sed0002757 Sechium edule
Sed0008160 Sechium edule
Sed0008174 Sechium edule
Sed0011622 Sechium edule
Sed0019210 Sechium edule
Sed0024065 Sechium edule
Sed0027060 Sechium edule
SGA_v2.0_scaffold14G06978 Striga asiatica
Solyc01g107790.2 Solanum lycopersicum
Solyc02g064940.1 Solanum lycopersicum
Solyc04g078560.1 Solanum lycopersicum
Solyc10g050110.1 Solanum lycopersicum
Solyc12g070110.1 Solanum lycopersicum
Sopen02g015060 Solanum pennellii
Sopen04g032160 Solanum pennellii
Sopen10g021250 Solanum pennellii
Sp1g36640 Schrenkiella parvula
Sp3g17400 Schrenkiella parvula
Sp6g10730 Schrenkiella parvula
TAR376G0499 Trochodendron aralioides
TAR628G1428 Trochodendron aralioides
THA.LOC104798794 Tarenaya hassleriana
THA.LOC104801432 Tarenaya hassleriana
THA.LOC104824591 Tarenaya hassleriana
THA.LOC104825368 Tarenaya hassleriana
Thecc.02G104800 Theobroma cacao
Thecc.02G105000 Theobroma cacao
Thecc.08G002000 Theobroma cacao
Thecc.08G002100 Theobroma cacao
Thhalv10011424m.g Eutrema salsugineum
Thhalv10020680m.g Eutrema salsugineum
Thhalv10028721m.g Eutrema salsugineum
TPR.G12681 Trifolium pratense
TPR.G35420 Trifolium pratense
TPR.G3783 Trifolium pratense
TWI56G0994 Tripterygium wilfordii
TWI79G1508 Tripterygium wilfordii
vmacro04556 Vaccinium macrocarpon
VMungo0251G0326 Vigna mungo
VMungo0251G1588 Vigna mungo
VMungo0647G1711 Vigna mungo
VMungo1215G0348 Vigna mungo
Zm00001eb009410 Zea mays
Zm00001eb078010 Zea mays
Zm00001eb184780 Zea mays
Zm00001eb247140 Zea mays
Zm00001eb426090 Zea mays
Zm00001eb433340 Zea mays

User provided reference genes

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