Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p36490 Brassica napus
A09p28840 Brassica napus
A09p32710 Brassica napus
Aa31LG9G11900 Aethionema arabicum
Aa31LG9G8970 Aethionema arabicum
Actinidia15970 Actinidia chinensis
Actinidia19236 Actinidia chinensis
Actinidia23296 Actinidia chinensis
Actinidia29374 Actinidia chinensis
Ah.02g124770 Amaranthus hybridus
Ah.02g125140 Amaranthus hybridus
Ah.02g127430 Amaranthus hybridus
Ah.03g146170 Amaranthus hybridus
Ah.09g225410 Amaranthus hybridus
Ah.09g225520 Amaranthus hybridus
Ah.13g075530 Amaranthus hybridus
AL1G47970 Arabidopsis lyrata
AL1G47980 Arabidopsis lyrata
AL1G47990 Arabidopsis lyrata
AL1G48010 Arabidopsis lyrata
AL1G48070 Arabidopsis lyrata
AL1G48080 Arabidopsis lyrata
AL3G46500 Arabidopsis lyrata
AL4G19020 Arabidopsis lyrata
AL6G43910 Arabidopsis lyrata
Aqoxy1G00582 Aquilegia oxysepala
Aqoxy2G04050 Aquilegia oxysepala
Aqoxy2G04051 Aquilegia oxysepala
Aqoxy6G02406 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.X4BGNP Arachis hypogaea
AT1G33590 Arabidopsis thaliana
AT1G33600 Arabidopsis thaliana
AT1G33610 Arabidopsis thaliana
AT1G33612 Arabidopsis thaliana
AT1G33670 Arabidopsis thaliana
AT2G26380 Arabidopsis thaliana
AT4G10100 Arabidopsis thaliana
ATR0099G046 Amborella trichopoda
ATR0661G193 Amborella trichopoda
ATR0757G218 Amborella trichopoda
ATR1089G014 Amborella trichopoda
Atru.chr1.269 Acer truncatum
Atru.chr3.1320 Acer truncatum
Atru.chr3.757 Acer truncatum
AUR62007788 Chenopodium quinoa
AUR62007790 Chenopodium quinoa
AUR62025342 Chenopodium quinoa
AUR62027162 Chenopodium quinoa
AUR62027163 Chenopodium quinoa
AUR62028345 Chenopodium quinoa
AUR62044398 Chenopodium quinoa
BcaB01g01450 Brassica carinata
BcaB01g01462 Brassica carinata
BcaB03g13692 Brassica carinata
BcaB04g18852 Brassica carinata
BcaB05g23921 Brassica carinata
BcaB05g24595 Brassica carinata
BcaB07g32995 Brassica carinata
BcaC03g16423 Brassica carinata
BcaC04g21016 Brassica carinata
BcaC05g27800 Brassica carinata
BcaC06g31917 Brassica carinata
BcaC08g43848 Brassica carinata
BolC2t10291H Brassica oleracea
BolC5t32528H Brassica oleracea
BolC6t36382H Brassica oleracea
BolC6t39384H Brassica oleracea
BolC6t39467H Brassica oleracea
BolC9t56496H Brassica oleracea
BraA05t21305Z Brassica rapa
BraA07t31220Z Brassica rapa
BraA09t38446Z Brassica rapa
BraA09t38811Z Brassica rapa
C05p37970 Brassica napus
C06p12310 Brassica napus
C06p40480 Brassica napus
C06p43950 Brassica napus
C09p36640 Brassica napus
CAN.G27.53 Capsicum annuum
CAN.G358.8 Capsicum annuum
CAN.G442.11 Capsicum annuum
CAN.G625.35 Capsicum annuum
CAN.G836.15 Capsicum annuum
CAN.G939.2 Capsicum annuum
CANSAT21G1408 Cannabis sativa
CANSAT21G2117 Cannabis sativa
CANSAT78G1516 Cannabis sativa
CARHR033050 Cardamine hirsuta
CARHR033060 Cardamine hirsuta
CARHR033070 Cardamine hirsuta
CARHR033080 Cardamine hirsuta
CARHR033100 Cardamine hirsuta
CARHR261140 Cardamine hirsuta
Carub.0001s3118 Capsella rubella
Carub.0001s3119 Capsella rubella
Carub.0001s3175 Capsella rubella
Carub.0001s3176 Capsella rubella
Carub.0001s3177 Capsella rubella
Carub.0001s3181 Capsella rubella
Carub.0003s2745 Capsella rubella
Carub.0003s2751 Capsella rubella
Carub.0003s2752 Capsella rubella
Carub.0006s2867 Capsella rubella
Ca_14116_v3 Cicer arietinum L.
CBR_g41370 Chara braunii
CBR_g5690 Chara braunii
Cc07_g10340 Coffea canephora
Cc10_g16350 Coffea canephora
CDE11G0405 Ceratophyllum demersum
Cfa006934 Carpinus fangiana
Cfa008069 Carpinus fangiana
Cfa008070 Carpinus fangiana
Cfa008073 Carpinus fangiana
Ciclev10019952m.g Citrus clementina
Ciclev10022992m.g Citrus clementina
CiPaw.03G013800 Carya illinoinensis
CiPaw.03G013900 Carya illinoinensis
CiPaw.07G055300 Carya illinoinensis
CiPaw.10G112700 Carya illinoinensis
ClCG01G020070 Citrullus lanatus
ClCG08G000770 Citrullus lanatus
ClCG11G008390 Citrullus lanatus
COL.COLO4_21972 Corchorus olitorius
COL.COLO4_25141 Corchorus olitorius
COL.COLO4_30249 Corchorus olitorius
Cpa.g.sc21.88 Carica papaya
Cpa.g.sc21.89 Carica papaya
Cpa.g.sc6.205 Carica papaya
Cre08.g382545 Chlamydomonas reinhardtii
CsaV3_2G033250 Cucumis sativus L.
CsaV3_5G032110 Cucumis sativus L.
CsaV3_5G039950 Cucumis sativus L.
CsaV3_6G046840 Cucumis sativus L.
CSS0005183 Camellia sinensis var. sinensis
CSS0019475 Camellia sinensis var. sinensis
DCAR_003512 Daucus carota
DCAR_015978 Daucus carota
DCAR_021489 Daucus carota
Dinv22114 Davidia involucrata
Dinv37409 Davidia involucrata
Dinv40050 Davidia involucrata
Duzib106G1039 Durio zibethinus
Duzib147G0685 Durio zibethinus
Duzib177G0070 Durio zibethinus
ECA248G1877 Erigeron canadensis
EL10Ac6g14594 Beta vulgaris
EL10Ac6g15676 Beta vulgaris
EL10Ac8g18938 Beta vulgaris
EL10Ac9g20955 Beta vulgaris
EL10As8g23862 Beta vulgaris
Eucgr.F02944 Eucalyptus grandis
Eucgr.F04074 Eucalyptus grandis
Eucgr.I02373 Eucalyptus grandis
FAN06G0734 Fragaria x ananassa
FAN06G1483 Fragaria x ananassa
FAN20G3138 Fragaria x ananassa
FAN24G2035 Fragaria x ananassa
FAN24G2062 Fragaria x ananassa
FAN26G1006 Fragaria x ananassa
FAN27G0168 Fragaria x ananassa
FAN27G0614 Fragaria x ananassa
FAN28G1436 Fragaria x ananassa
FvH4_1g12240 Fragaria vesca
FvH4_2g00740 Fragaria vesca
FvH4_2g00750 Fragaria vesca
Glyma.01G039600 Glycine max
Glyma.06G319640 Glycine max
Glyma.06G319700 Glycine max
Glyma.06G321300 Glycine max
Glyma.16G131500 Glycine max
Gohir.A06G168000 Gossypium hirsutum
Gohir.A08G230800 Gossypium hirsutum
Gohir.A12G061400 Gossypium hirsutum
Gohir.D06G175400 Gossypium hirsutum
Gohir.D08G251200 Gossypium hirsutum
Gohir.D12G061500 Gossypium hirsutum
Gorai.004G267900 Gossypium raimondii
Gorai.008G064700 Gossypium raimondii
Gorai.010G205800 Gossypium raimondii
GSVIVG01018835001 Vitis vinifera
GSVIVG01036284001 Vitis vinifera
GSVIVG01037229001 Vitis vinifera
HanXRQChr01g0026311 Helianthus annuus
HanXRQChr02g0057651 Helianthus annuus
HanXRQChr16g0530901 Helianthus annuus
HanXRQChr16g0530911 Helianthus annuus
Haze_03816 Corylus avellana
Haze_13961 Corylus avellana
Hma1.2p1_0238F.1_g099660 Hydrangea macrophylla
Hma1.2p1_0238F.1_g099670 Hydrangea macrophylla
Hma1.2p1_1771F.1_g301630 Hydrangea macrophylla
Hma1.2p1_2213F.1_g317220 Hydrangea macrophylla
HPP92_013556 Vanilla planifolia
Hund14023 Selenicereus undatus
Lalb_Chr05g0217471 Lupinus albus
Lalb_Chr15g0079721 Lupinus albus
Lalb_Chr15g0079781 Lupinus albus
Lj1g0004820 Lotus japonicus
Lj2g0017289 Lotus japonicus
Lj3C1044T4 Lonicera japonica
Lj3g0017306 Lotus japonicus
Lj3g0021440 Lotus japonicus
Lj3g0024983 Lotus japonicus
Lj7A419T37 Lonicera japonica
Lj7C419G2 Lonicera japonica
Lsat_1_v5_gn_1_52900 Lactuca sativa
Lsat_1_v5_gn_1_56320 Lactuca sativa
Lsat_1_v5_gn_3_75380 Lactuca sativa
Manes.01G142200 Manihot esculenta
Manes.03G079500 Manihot esculenta
Manes.05G094900 Manihot esculenta
Manes.18G115700 Manihot esculenta
Mapoly0008s0264 Marchantia polymorpha
Mapoly0032s0028 Marchantia polymorpha
Mapoly0053s0105 Marchantia polymorpha
Mapoly0054s0114 Marchantia polymorpha
Mapoly0069s0052 Marchantia polymorpha
Mapoly0096s0031 Marchantia polymorpha
MBI01_g41229_MAGBIO Magnolia biondii
MBI06_g14319_MAGBIO Magnolia biondii
MBI11_g18033_MAGBIO Magnolia biondii
MCO06G125 Micromonas commoda
MD05G1002900 Malus domestica
MD05G1003200 Malus domestica
MD10G1004200 Malus domestica
MD15G1249900 Malus domestica
Medtr3g008540 Medicago truncatula
Medtr3g009050 Medicago truncatula
MELO3C007881.2 Cucumis melo
MELO3C008095.2 Cucumis melo
MELO3C012046.2 Cucumis melo
MELO3C022174.2 Cucumis melo
Migut.C01384 Erythranthe guttata
Migut.C01385 Erythranthe guttata
Migut.F00453 Erythranthe guttata
Migut.F00454 Erythranthe guttata
Migut.H02487 Erythranthe guttata
MSTRG.2503 Avicennia marina
MSTRG.5080 Avicennia marina
Nitab4.5_0000213g0030 Nicotiana tabacum
Nitab4.5_0000791g0050 Nicotiana tabacum
Nitab4.5_0002266g0090 Nicotiana tabacum
Nitab4.5_0003432g0050 Nicotiana tabacum
Nitab4.5_0004086g0010 Nicotiana tabacum
Nitab4.5_0007940g0020 Nicotiana tabacum
Nn1g03278 Nelumbo nucifera
Nn4g25639 Nelumbo nucifera
Nn5g29193 Nelumbo nucifera
Nn5g29993 Nelumbo nucifera
Nn6g34378 Nelumbo nucifera
Nn6g34382 Nelumbo nucifera
Oeu005148.1 Olea europaea
Oeu023580.1 Olea europaea
Os02g0558300 Oryza sativa ssp. japonica
Peaxi162Scf00078g00076 Petunia axillaris
Peaxi162Scf00078g00078 Petunia axillaris
Peaxi162Scf00078g00710 Petunia axillaris
Peaxi162Scf00083g01719 Petunia axillaris
Peaxi162Scf00083g01720 Petunia axillaris
Peaxi162Scf00097g00032 Petunia axillaris
Peaxi162Scf00097g00033 Petunia axillaris
PGR044G0661 Punica granatum
PGR083G1536 Punica granatum
PGSC0003DMG400003544 Solanum tuberosum
PGSC0003DMG400010036 Solanum tuberosum
PGSC0003DMG400016908 Solanum tuberosum
Phvul.003G258800 Phaseolus vulgaris
Phvul.005G007100 Phaseolus vulgaris
Phvul.L001622 Phaseolus vulgaris
Potri.005G117700 Populus trichocarpa
Potri.007G016700 Populus trichocarpa
Potri.013G098850 Populus trichocarpa
Potri.013G098900 Populus trichocarpa
Potri.019G070801 Populus trichocarpa
Pp3c10_2370 Physcomitrium patens
Pp3c1_25110 Physcomitrium patens
Pp3c21_19160 Physcomitrium patens
Pp3c24_14090 Physcomitrium patens
Pp3c25_12800 Physcomitrium patens
Prupe.7G164400 Prunus persica
Prupe.8G006300 Prunus persica
Prupe.8G006600 Prunus persica
Psat5g227400 Pisum sativum
Psat5g230720 Pisum sativum
PSO063G6131 Papaver somniferum
PSO135G0501 Papaver somniferum
PSO135G0758 Papaver somniferum
PSO339G0564 Papaver somniferum
PSO384G1457 Papaver somniferum
PSO384G1990 Papaver somniferum
PSO384G2367 Papaver somniferum
PSO384G4644 Papaver somniferum
PSO541G1422 Papaver somniferum
PSO541G3058 Papaver somniferum
PSO541G4115 Papaver somniferum
PSO541G4589 Papaver somniferum
PSO541G4650 Papaver somniferum
PSO541G5796 Papaver somniferum
PSO675G0217 Papaver somniferum
PSO675G4346 Papaver somniferum
PSO675G6176 Papaver somniferum
PSO675G6841 Papaver somniferum
PSO675G9374 Papaver somniferum
QL07p031108 Quercus lobata
QL07p047839 Quercus lobata
QL09p001766 Quercus lobata
QL09p001786 Quercus lobata
RcHm_v2.0_Chr2g0100021 Rosa chinensis
RcHm_v2.0_Chr6g0251101 Rosa chinensis
RcHm_v2.0_Chr6g0251131 Rosa chinensis
Rhsim08G0036100 Rhododendron simsii
Rhsim12G0002600 Rhododendron simsii
Rhsim12G0002800 Rhododendron simsii
Sabra05G0096800 Salix brachista
Sabra07G0013900 Salix brachista
Sabra13G0083500 Salix brachista
Sabra13G0083600 Salix brachista
Sabra13G0084800 Salix brachista
Sabra13G0084900 Salix brachista
Sabra19G0082700 Salix brachista
SalBow7G0612 Salvia bowleyana
SalBow8G3503 Salvia bowleyana
Sc07g0007330 Simmondsia chinensis
Sc18g0002990 Simmondsia chinensis
Sc19g0002890 Simmondsia chinensis
Sed0015966 Sechium edule
Sed0016929 Sechium edule
Sed0017068 Sechium edule
SEGI_06051 Sequoiadendron giganteum
SEGI_22452 Sequoiadendron giganteum
SEGI_22882 Sequoiadendron giganteum
SGA_v2.0_scaffold118G32615 Striga asiatica
SGA_v2.0_scaffold2G01238 Striga asiatica
SHI16716 Sapria himalayana
SMO115G0158 Selaginella moellendorffii
SMO119G0349 Selaginella moellendorffii
SMO166G0060 Selaginella moellendorffii
SMO178G0001 Selaginella moellendorffii
Solyc02g084600.4 Solanum lycopersicum
Solyc02g090010.3 Solanum lycopersicum
Solyc10g052880.1 Solanum lycopersicum
Sopen02g029270 Solanum pennellii
Sopen02g034700 Solanum pennellii
Sopen10g023690 Solanum pennellii
Sp1g29040 Schrenkiella parvula
Sp6g07180 Schrenkiella parvula
Sp6g07460 Schrenkiella parvula
TAR362G0902 Trochodendron aralioides
TAR376G0455 Trochodendron aralioides
TAR628G0577 Trochodendron aralioides
TAR628G0632 Trochodendron aralioides
THA.LOC104815816 Tarenaya hassleriana
THA.LOC104815822 Tarenaya hassleriana
Thecc.01G024300 Theobroma cacao
Thecc.03G189200 Theobroma cacao
Thecc.08G179500 Theobroma cacao
Thhalv10001853m.g Eutrema salsugineum
Thhalv10001857m.g Eutrema salsugineum
Thhalv10007504m.g Eutrema salsugineum
Thhalv10007598m.g Eutrema salsugineum
Thhalv10007627m.g Eutrema salsugineum
Thhalv10009576m.g Eutrema salsugineum
Thhalv10009786m.g Eutrema salsugineum
Thhalv10009975m.g Eutrema salsugineum
Thhalv10010003m.g Eutrema salsugineum
Thhalv10029346m.g Eutrema salsugineum
TPR.G28708 Trifolium pratense
TWI09G1571 Tripterygium wilfordii
TWI75G0918 Tripterygium wilfordii
TWI81G0898 Tripterygium wilfordii
unitig_8.g4896 Utricularia gibba
vmacro00942 Vaccinium macrocarpon
vmacro22099 Vaccinium macrocarpon
VMungo0251G2871 Vigna mungo
VMungo0464G0569 Vigna mungo
VMungo1080G1397 Vigna mungo
VMungo1080G1609 Vigna mungo
VMungo1215G0654 Vigna mungo
Zm00001eb182270 Zea mays
Zm00001eb244080 Zea mays

User provided reference genes

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