Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
Actinidia01864 Actinidia chinensis
Actinidia06532 Actinidia chinensis
Actinidia10302 Actinidia chinensis
Actinidia29579 Actinidia chinensis
Actinidia30752 Actinidia chinensis
Ah.05g170320 Amaranthus hybridus
Aqoxy6G00696 Aquilegia oxysepala
Aqoxy6G00697 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0T4V2C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.59SVGU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5RQ1EV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7BE6GS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8X0KIE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9Z3VQ4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A7JCH7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I0F6BN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SG30IT Arachis hypogaea
ATR0564G298 Amborella trichopoda
ATR0564G300 Amborella trichopoda
ATR0684G014 Amborella trichopoda
ATR0686G181 Amborella trichopoda
Atru.chr13.1260 Acer truncatum
Atru.chr2.3256 Acer truncatum
Atru.chr3.1329 Acer truncatum
Atru.chr3.1332 Acer truncatum
AUR62003268 Chenopodium quinoa
AUR62013376 Chenopodium quinoa
AUR62013532 Chenopodium quinoa
AUR62027197 Chenopodium quinoa
AUR62038528 Chenopodium quinoa
AUR62044253 Chenopodium quinoa
AUR62044352 Chenopodium quinoa
CAN.G181.71 Capsicum annuum
CAN.G181.72 Capsicum annuum
CAN.G905.3 Capsicum annuum
CANSAT01G0002 Cannabis sativa
CANSAT01G2340 Cannabis sativa
CANSAT25G0023 Cannabis sativa
Ca_14112_v3 Cicer arietinum L.
Ca_16504_v3 Cicer arietinum L.
Ca_17718_v3 Cicer arietinum L.
Ca_30636_v3 Cicer arietinum L.
Cc00_g17010 Coffea canephora
Cc00_g30900 Coffea canephora
Cc07_g14490 Coffea canephora
Cc10_g07540 Coffea canephora
CDE06G0075 Ceratophyllum demersum
Cfa002692 Carpinus fangiana
Cfa004372 Carpinus fangiana
Cfa015921 Carpinus fangiana
Cfa022486 Carpinus fangiana
Cfa024929 Carpinus fangiana
Ciclev10000913m.g Citrus clementina
Ciclev10025415m.g Citrus clementina
Ciclev10025463m.g Citrus clementina
Ciclev10026955m.g Citrus clementina
CiPaw.01G048900 Carya illinoinensis
CiPaw.03G139500 Carya illinoinensis
CiPaw.06G021500 Carya illinoinensis
CiPaw.06G021800 Carya illinoinensis
CiPaw.06G021900 Carya illinoinensis
ClCG01G018560 Citrullus lanatus
COL.COLO4_09924 Corchorus olitorius
COL.COLO4_16451 Corchorus olitorius
COL.COLO4_16452 Corchorus olitorius
COL.COLO4_16454 Corchorus olitorius
COL.COLO4_27305 Corchorus olitorius
Cpa.g.sc20.222 Carica papaya
Cpa.g.sc55.63 Carica papaya
Cpa.g.sc66.87 Carica papaya
CsaV3_6G045210 Cucumis sativus L.
CSS0000558 Camellia sinensis var. sinensis
CSS0007010 Camellia sinensis var. sinensis
CSS0008923 Camellia sinensis var. sinensis
CSS0011467 Camellia sinensis var. sinensis
CSS0013376 Camellia sinensis var. sinensis
CSS0014170 Camellia sinensis var. sinensis
CSS0017192 Camellia sinensis var. sinensis
CSS0022728 Camellia sinensis var. sinensis
CSS0027791 Camellia sinensis var. sinensis
CSS0031342 Camellia sinensis var. sinensis
CSS0045655 Camellia sinensis var. sinensis
CSS0048246 Camellia sinensis var. sinensis
CSS0048276 Camellia sinensis var. sinensis
CSS0048560 Camellia sinensis var. sinensis
CSS0050271 Camellia sinensis var. sinensis
DCAR_003459 Daucus carota
DCAR_012729 Daucus carota
Dinv08875 Davidia involucrata
Dinv13039 Davidia involucrata
Dinv41718 Davidia involucrata
Dinv44748 Davidia involucrata
Duzib093G0964 Durio zibethinus
Duzib147G1577 Durio zibethinus
Duzib264G0595 Durio zibethinus
ECA232G3183 Erigeron canadensis
EL10Ac1g01263 Beta vulgaris
EL10Ac6g14810 Beta vulgaris
Eucgr.F00486 Eucalyptus grandis
Eucgr.F00487 Eucalyptus grandis
Eucgr.F00488 Eucalyptus grandis
Eucgr.F00489 Eucalyptus grandis
Eucgr.I00415 Eucalyptus grandis
Eucgr.I00417 Eucalyptus grandis
Eucgr.I00543 Eucalyptus grandis
Eucgr.I00582 Eucalyptus grandis
Eucgr.L01169 Eucalyptus grandis
Eucgr.L01170 Eucalyptus grandis
Eucgr.L02139 Eucalyptus grandis
FAN03G1384 Fragaria x ananassa
FAN08G1288 Fragaria x ananassa
FAN13G1626 Fragaria x ananassa
FAN18G3022 Fragaria x ananassa
FAN19G1725 Fragaria x ananassa
FAN19G2128 Fragaria x ananassa
FAN19G2822 Fragaria x ananassa
FAN23G1969 Fragaria x ananassa
FAN23G2628 Fragaria x ananassa
FAN26G0713 Fragaria x ananassa
FAN26G1242 Fragaria x ananassa
FvH4_1g20150 Fragaria vesca
FvH4_1g21360 Fragaria vesca
FvH4_1g21420 Fragaria vesca
FvH4_5g37950 Fragaria vesca
FvH4_5g39240 Fragaria vesca
Glyma.05G180700 Glycine max
Glyma.06G319400 Glycine max
Glyma.06G319460 Glycine max
Glyma.06G319520 Glycine max
Glyma.08G138300 Glycine max
Glyma.11G204366 Glycine max
Glyma.11G242600 Glycine max
Glyma.13G087400 Glycine max
Glyma.13G087500 Glycine max
Glyma.14G170600 Glycine max
Glyma.18G014400 Glycine max
Glyma.19G071400 Glycine max
Gohir.A02G130200 Gossypium hirsutum
Gohir.A02G131700 Gossypium hirsutum
Gohir.A02G131800 Gossypium hirsutum
Gohir.A02G131900 Gossypium hirsutum
Gohir.A05G228900 Gossypium hirsutum
Gohir.A10G087200 Gossypium hirsutum
Gohir.D03G041100 Gossypium hirsutum
Gohir.D03G043100 Gossypium hirsutum
Gohir.D03G043166 Gossypium hirsutum
Gohir.D03G043200 Gossypium hirsutum
Gohir.D05G231400 Gossypium hirsutum
Gohir.D10G101100 Gossypium hirsutum
Gorai.003G041900 Gossypium raimondii
Gorai.003G044000 Gossypium raimondii
Gorai.003G044200 Gossypium raimondii
Gorai.003G044300 Gossypium raimondii
Gorai.009G239600 Gossypium raimondii
Gorai.011G110800 Gossypium raimondii
GSVIVG01002801001 Vitis vinifera
GSVIVG01003438001 Vitis vinifera
GSVIVG01006135001 Vitis vinifera
GSVIVG01006369001 Vitis vinifera
GSVIVG01006372001 Vitis vinifera
GSVIVG01008995001 Vitis vinifera
HanXRQChr11g0320871 Helianthus annuus
HanXRQChr11g0320891 Helianthus annuus
HanXRQChr11g0320901 Helianthus annuus
HanXRQChr12g0381021 Helianthus annuus
Haze_00574 Corylus avellana
Haze_15040 Corylus avellana
Haze_24965 Corylus avellana
Hma1.2p1_0120F.1_g057120 Hydrangea macrophylla
HPP92_006295 Vanilla planifolia
HPP92_006296 Vanilla planifolia
HPP92_006297 Vanilla planifolia
HPP92_006298 Vanilla planifolia
HPP92_006299 Vanilla planifolia
HPP92_006308 Vanilla planifolia
HPP92_006309 Vanilla planifolia
HPP92_006310 Vanilla planifolia
HPP92_006311 Vanilla planifolia
HPP92_006312 Vanilla planifolia
HPP92_006313 Vanilla planifolia
HPP92_006314 Vanilla planifolia
HPP92_013136 Vanilla planifolia
Hund15022 Selenicereus undatus
Hund15394 Selenicereus undatus
Hund16550 Selenicereus undatus
Hund26945 Selenicereus undatus
Lalb_Chr04g0253201 Lupinus albus
Lalb_Chr07g0185051 Lupinus albus
Lalb_Chr10g0102211 Lupinus albus
Lj1g0008801 Lotus japonicus
Lj1g0011177 Lotus japonicus
Lj1g0015532 Lotus japonicus
Lj1g0020663 Lotus japonicus
Lj1g0021779 Lotus japonicus
Lj4A278T51 Lonicera japonica
Lj4A278T52 Lonicera japonica
Lj4C107T4 Lonicera japonica
Lj4g0007993 Lotus japonicus
Lj6g0003259 Lotus japonicus
Lj6g0010163 Lotus japonicus
Lj6g0013549 Lotus japonicus
Lsat_1_v5_gn_9_44040 Lactuca sativa
Manes.10G071662 Manihot esculenta
Manes.12G129400 Manihot esculenta
Manes.12G137500 Manihot esculenta
Manes.18G069802 Manihot esculenta
Manes.18G069900 Manihot esculenta
Mapoly0023s0008 Marchantia polymorpha
Mapoly0075s0023 Marchantia polymorpha
Mapoly0180s0004 Marchantia polymorpha
MBI02_g41006_MAGBIO Magnolia biondii
MBI05_g06569_MAGBIO Magnolia biondii
MBI05_g14549_MAGBIO Magnolia biondii
MBI05_g43273_MAGBIO Magnolia biondii
MD01G1025400 Malus domestica
MD08G1178600 Malus domestica
MD15G1317300 Malus domestica
Medtr3g008960 Medicago truncatula
Medtr3g009010 Medicago truncatula
Medtr3g009020 Medicago truncatula
Medtr3g009030 Medicago truncatula
Medtr3g086750 Medicago truncatula
Medtr4g035760 Medicago truncatula
Medtr5g061980 Medicago truncatula
Medtr5g062190 Medicago truncatula
Medtr5g062290 Medicago truncatula
Medtr8g091310 Medicago truncatula
MELO3C007734.2 Cucumis melo
Migut.C00224 Erythranthe guttata
Migut.C00227 Erythranthe guttata
Migut.O00463 Erythranthe guttata
MSTRG.24131 Avicennia marina
MSTRG.24474 Avicennia marina
MSTRG.943 Avicennia marina
Nitab4.5_0000241g0110 Nicotiana tabacum
Nitab4.5_0000421g0110 Nicotiana tabacum
Nitab4.5_0005930g0020 Nicotiana tabacum
Nitab4.5_0011630g0010 Nicotiana tabacum
Nn1g05284 Nelumbo nucifera
Nn1g05285 Nelumbo nucifera
Nn1g05477 Nelumbo nucifera
Nn5g29043 Nelumbo nucifera
Nn5g29975 Nelumbo nucifera
Oeu000875.2 Olea europaea
Os05g0244500 Oryza sativa ssp. japonica
Os08g0484100 Oryza sativa ssp. japonica
Os10g0370500 Oryza sativa ssp. japonica
Os10g0370800 Oryza sativa ssp. japonica
Peaxi162Scf00160g01417 Petunia axillaris
Peaxi162Scf00237g00071 Petunia axillaris
Peaxi162Scf00237g00072 Petunia axillaris
Peaxi162Scf00765g00134 Petunia axillaris
PGR004G1918 Punica granatum
PGSC0003DMG400008553 Solanum tuberosum
PGSC0003DMG400016216 Solanum tuberosum
Phvul.001G254400 Phaseolus vulgaris
Phvul.002G261800 Phaseolus vulgaris
Phvul.008G171300 Phaseolus vulgaris
Phvul.008G171400 Phaseolus vulgaris
Potri.002G093000 Populus trichocarpa
Potri.005G078500 Populus trichocarpa
Potri.005G167800 Populus trichocarpa
Potri.007G010000 Populus trichocarpa
Potri.007G089400 Populus trichocarpa
Pp3c11_9800 Physcomitrium patens
Pp3c2_32790 Physcomitrium patens
Prupe.1G512300 Prunus persica
Prupe.6G181100 Prunus persica
Prupe.6G194500 Prunus persica
Psat2g074320 Pisum sativum
Psat3g119080 Pisum sativum
Psat5g092000 Pisum sativum
Psat5g092040 Pisum sativum
Psat5g230880 Pisum sativum
Psat7g052880 Pisum sativum
PSO017G7391 Papaver somniferum
PSO541G0411 Papaver somniferum
PSO541G1046 Papaver somniferum
PSO541G1313 Papaver somniferum
PSO541G3263 Papaver somniferum
PSO541G3431 Papaver somniferum
PSO541G3464 Papaver somniferum
PSO541G3504 Papaver somniferum
PSO541G4322 Papaver somniferum
PSO541G5363 Papaver somniferum
PSO541G5434 Papaver somniferum
PSO541G5606 Papaver somniferum
PSO541G6076 Papaver somniferum
PSO675G0731 Papaver somniferum
PSO675G3999 Papaver somniferum
PSO675G4423 Papaver somniferum
PSO675G4513 Papaver somniferum
PSO675G5412 Papaver somniferum
PSO675G5569 Papaver somniferum
PSO675G6588 Papaver somniferum
PSO675G6698 Papaver somniferum
PSO675G7856 Papaver somniferum
QL04p047375 Quercus lobata
QL06p047886 Quercus lobata
QL06p050101 Quercus lobata
QL06p050129 Quercus lobata
QL12p036033 Quercus lobata
QL12p036042 Quercus lobata
QL12p036057 Quercus lobata
RcHm_v2.0_Chr2g0112201 Rosa chinensis
RcHm_v2.0_Chr2g0115211 Rosa chinensis
RcHm_v2.0_Chr2g0115231 Rosa chinensis
RcHm_v2.0_Chr5g0040161 Rosa chinensis
RcHm_v2.0_Chr6g0266481 Rosa chinensis
RcHm_v2.0_Chr7g0239891 Rosa chinensis
Rhsim05G0049400 Rhododendron simsii
Rhsim06G0085000 Rhododendron simsii
Rhsim07G0200700 Rhododendron simsii
Rhsim10G0169400 Rhododendron simsii
Sabra05G0064500 Salix brachista
Sabra05G0126600 Salix brachista
Sabra07G0007600 Salix brachista
Sabra07G0073700 Salix brachista
SalBow3G2740 Salvia bowleyana
SalBow5G4335 Salvia bowleyana
SalBow7G1130 Salvia bowleyana
Sc01g0000080 Simmondsia chinensis
Sc01g0000090 Simmondsia chinensis
Sc01g0000210 Simmondsia chinensis
Sc05g0007710 Simmondsia chinensis
Sc16g0000360 Simmondsia chinensis
Sc16g0000370 Simmondsia chinensis
Sed0014688 Sechium edule
SEGI_00130 Sequoiadendron giganteum
SEGI_11061 Sequoiadendron giganteum
SEGI_13412 Sequoiadendron giganteum
SEGI_17397 Sequoiadendron giganteum
SEGI_20452 Sequoiadendron giganteum
SEGI_26679 Sequoiadendron giganteum
SEGI_26839 Sequoiadendron giganteum
SEGI_30269 Sequoiadendron giganteum
SEGI_33912 Sequoiadendron giganteum
SGA_v2.0_scaffold28G11941 Striga asiatica
SMO334G0009 Selaginella moellendorffii
SMO334G0026 Selaginella moellendorffii
SMO334G0085 Selaginella moellendorffii
SMO334G0125 Selaginella moellendorffii
SMO361G0067 Selaginella moellendorffii
Solyc11g010350.2 Solanum lycopersicum
Solyc12g056960.2 Solanum lycopersicum
Sopen11g005130 Solanum pennellii
Sopen12g029620 Solanum pennellii
TAR381G0438 Trochodendron aralioides
TAR381G0596 Trochodendron aralioides
TAR381G1132 Trochodendron aralioides
TAR625G0590 Trochodendron aralioides
TAR625G0761 Trochodendron aralioides
THA.LOC104801684 Tarenaya hassleriana
Thecc.01G094700 Theobroma cacao
Thecc.01G105200 Theobroma cacao
Thecc.08G111100 Theobroma cacao
Thecc.08G111200 Theobroma cacao
TPR.G10512 Trifolium pratense
TPR.G2193 Trifolium pratense
TPR.G28473 Trifolium pratense
TPR.G28485 Trifolium pratense
TPR.G28709 Trifolium pratense
TPR.G28711 Trifolium pratense
TPR.G30526 Trifolium pratense
TPR.G31688 Trifolium pratense
TPR.G31731 Trifolium pratense
TWI36G0854 Tripterygium wilfordii
TWI56G0263 Tripterygium wilfordii
TWI74G0686 Tripterygium wilfordii
TWI74G0739 Tripterygium wilfordii
TWI74G0973 Tripterygium wilfordii
unitig_748.g8483 Utricularia gibba
vmacro04762 Vaccinium macrocarpon
vmacro13266 Vaccinium macrocarpon
vmacro21231 Vaccinium macrocarpon
vmacro22665 Vaccinium macrocarpon
VMungo0251G3660 Vigna mungo
VMungo0647G2333 Vigna mungo
VMungo1080G0985 Vigna mungo
VMungo1383G0869 Vigna mungo
Zm00001eb347530 Zea mays
Zm00001eb372860 Zea mays

User provided reference genes

Program Settings