Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p03110 Brassica napus
A02p19130 Brassica napus
A03p32820 Brassica napus
A05p45060 Brassica napus
A08p30300 Brassica napus
A09p59790 Brassica napus
A10p23390 Brassica napus
Aa31LG11G13990 Aethionema arabicum
Aa31LG4G4480 Aethionema arabicum
Aa31LG5G12700 Aethionema arabicum
Aa31LG7G3300 Aethionema arabicum
Aa31LG7G3380 Aethionema arabicum
Actinidia04816 Actinidia chinensis
Actinidia16134 Actinidia chinensis
Actinidia17589 Actinidia chinensis
Actinidia18984 Actinidia chinensis
Actinidia26255 Actinidia chinensis
Actinidia35042 Actinidia chinensis
Actinidia36250 Actinidia chinensis
Ah.12g062700 Amaranthus hybridus
AL1G31060 Arabidopsis lyrata
AL2G34060 Arabidopsis lyrata
AL3G11420 Arabidopsis lyrata
AL6G26440 Arabidopsis lyrata
Aqoxy3G03674 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.07JFIQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3H6922 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4FZ475 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6FF65R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8G7WAE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.96TMTR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9LL4YM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AFC50C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AX54M2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CJ8RYC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DM14FR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EU1QMU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F7LVCS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HRE7NK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JH4TE9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P64CW8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RV05CK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T2BGRF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZRKH1E Arachis hypogaea
AT1G18620 Arabidopsis thaliana
AT1G74160 Arabidopsis thaliana
AT3G02170 Arabidopsis thaliana
AT5G15580 Arabidopsis thaliana
ATR0177G034 Amborella trichopoda
Atru.chr8.479 Acer truncatum
Atru.chr9.540 Acer truncatum
Atru.chr9.541 Acer truncatum
AUR62008553 Chenopodium quinoa
AUR62018198 Chenopodium quinoa
AUR62021538 Chenopodium quinoa
AUR62021539 Chenopodium quinoa
AUR62038685 Chenopodium quinoa
AUR62039644 Chenopodium quinoa
BcaB03g14493 Brassica carinata
BcaB05g24836 Brassica carinata
BcaC01g04472 Brassica carinata
BcaC01g04479 Brassica carinata
BcaC01g04483 Brassica carinata
BcaC01g04484 Brassica carinata
BcaC03g15486 Brassica carinata
BcaC03g18556 Brassica carinata
BcaC05g30330 Brassica carinata
BcaC07g38931 Brassica carinata
BcaC07g41313 Brassica carinata
BcaC07g41314 Brassica carinata
BcaC08g46824 Brassica carinata
BolC2t06709H Brassica oleracea
BolC2t09197H Brassica oleracea
BolC3t16259H Brassica oleracea
BolC5t35102H Brassica oleracea
BolC8t49505H Brassica oleracea
BolC8t51876H Brassica oleracea
BolC9t58992H Brassica oleracea
BraA02t05280Z Brassica rapa
BraA02t06961Z Brassica rapa
BraA03t12452Z Brassica rapa
BraA05t23155Z Brassica rapa
BraA08t34963Z Brassica rapa
BraA10t44407Z Brassica rapa
C02p07800 Brassica napus
C02p31650 Brassica napus
C03p39940 Brassica napus
C06p48320 Brassica napus
C06p48330 Brassica napus
C08p18790 Brassica napus
C08p43220 Brassica napus
C09p61530 Brassica napus
C09p75560 Brassica napus
CAN.G790.65 Capsicum annuum
CANSAT64G1243 Cannabis sativa
CANSAT80G0093 Cannabis sativa
CARHR019240 Cardamine hirsuta
CARHR067310 Cardamine hirsuta
CARHR076140 Cardamine hirsuta
CARHR197730 Cardamine hirsuta
Carub.0001s1825 Capsella rubella
Carub.0002s2097 Capsella rubella
Carub.0003s0129 Capsella rubella
Carub.0006s1375 Capsella rubella
Ca_13744_v3 Cicer arietinum L.
Ca_26687_v3 Cicer arietinum L.
Cc00_g03480 Coffea canephora
Cc07_g04320 Coffea canephora
CDE04G1083 Ceratophyllum demersum
CDE07G0414 Ceratophyllum demersum
CDE10G0389 Ceratophyllum demersum
CDE10G0837 Ceratophyllum demersum
CDE10G1150 Ceratophyllum demersum
CDE10G1262 Ceratophyllum demersum
Cfa019350 Carpinus fangiana
Ciclev10010955m.g Citrus clementina
Ciclev10018601m.g Citrus clementina
CiPaw.03G087900 Carya illinoinensis
CiPaw.04G054500 Carya illinoinensis
CiPaw.11G055000 Carya illinoinensis
ClCG04G011700 Citrullus lanatus
ClCG06G015570 Citrullus lanatus
ClCG11G004820 Citrullus lanatus
COL.COLO4_24325 Corchorus olitorius
COL.COLO4_37967 Corchorus olitorius
Cpa.g.sc14.190 Carica papaya
Cpa.g.sc94.63 Carica papaya
Cre16.g672200 Chlamydomonas reinhardtii
CsaV3_1G003000 Cucumis sativus L.
CsaV3_1G006080 Cucumis sativus L.
CsaV3_5G038540 Cucumis sativus L.
CSS0000385 Camellia sinensis var. sinensis
CSS0011639 Camellia sinensis var. sinensis
CSS0025996 Camellia sinensis var. sinensis
CSS0026829 Camellia sinensis var. sinensis
DCAR_010159 Daucus carota
DCAR_011036 Daucus carota
DCAR_014029 Daucus carota
DCAR_025439 Daucus carota
Dinv17428 Davidia involucrata
Dinv22769 Davidia involucrata
Dinv22770 Davidia involucrata
Dinv34934 Davidia involucrata
Duzib068G0697 Durio zibethinus
Duzib084G0885 Durio zibethinus
Duzib147G1407 Durio zibethinus
Duzib205G1195 Durio zibethinus
Duzib264G0288 Durio zibethinus
ECA232G0439 Erigeron canadensis
ECA238G2570 Erigeron canadensis
ECA246G0150 Erigeron canadensis
ECA246G4455 Erigeron canadensis
ECA247G0783 Erigeron canadensis
EL10Ac2g03148 Beta vulgaris
EL10Ac5g11155 Beta vulgaris
Eucgr.B00609 Eucalyptus grandis
Eucgr.I02039 Eucalyptus grandis
FAN02G2731 Fragaria x ananassa
FAN05G3132 Fragaria x ananassa
FAN08G3550 Fragaria x ananassa
FAN09G3955 Fragaria x ananassa
FAN13G0593 Fragaria x ananassa
FAN14G0699 Fragaria x ananassa
FAN14G1189 Fragaria x ananassa
FAN18G4227 Fragaria x ananassa
FvH4_5g13690 Fragaria vesca
FvH4_6g46710 Fragaria vesca
Glyma.04G161000 Glycine max
Glyma.05G019800 Glycine max
Glyma.06G204400 Glycine max
Glyma.08G247500 Glycine max
Glyma.13G055700 Glycine max
Glyma.17G080000 Glycine max
Glyma.18G268900 Glycine max
Glyma.19G031100 Glycine max
Gohir.A05G372700 Gossypium hirsutum
Gohir.A07G067800 Gossypium hirsutum
Gohir.A09G243600 Gossypium hirsutum
Gohir.A11G060900 Gossypium hirsutum
Gohir.D04G042900 Gossypium hirsutum
Gohir.D07G072400 Gossypium hirsutum
Gohir.D09G244300 Gossypium hirsutum
Gohir.D11G065000 Gossypium hirsutum
Gorai.001G076600 Gossypium raimondii
Gorai.006G268300 Gossypium raimondii
Gorai.007G070200 Gossypium raimondii
Gorai.012G048300 Gossypium raimondii
GSVIVG01008110001 Vitis vinifera
GSVIVG01032914001 Vitis vinifera
HanXRQChr02g0044791 Helianthus annuus
HanXRQChr04g0110051 Helianthus annuus
HanXRQChr07g0199721 Helianthus annuus
HanXRQChr08g0230431 Helianthus annuus
HanXRQChr13g0401301 Helianthus annuus
HanXRQChr13g0423291 Helianthus annuus
HanXRQChr14g0449791 Helianthus annuus
HanXRQChr15g0488921 Helianthus annuus
HanXRQChr16g0522171 Helianthus annuus
HanXRQChr17g0546021 Helianthus annuus
HanXRQChr17g0550241 Helianthus annuus
Haze_07741 Corylus avellana
Haze_14419 Corylus avellana
Hma1.2p1_0029F.1_g018050 Hydrangea macrophylla
HPP92_006050 Vanilla planifolia
HPP92_019468 Vanilla planifolia
Hund02574 Selenicereus undatus
Hund09931 Selenicereus undatus
Hund13136 Selenicereus undatus
Lalb_Chr02g0158881 Lupinus albus
Lalb_Chr06g0174931 Lupinus albus
Lalb_Chr07g0178331 Lupinus albus
Lalb_Chr12g0197281 Lupinus albus
Lj1g0002041 Lotus japonicus
Lj1g0014834 Lotus japonicus
Lj2g0000752 Lotus japonicus
Lj4C120T11 Lonicera japonica
Lj5A133T99 Lonicera japonica
Lju41A2T69 Lonicera japonica
Lju41C2T9 Lonicera japonica
Lsat_1_v5_gn_1_14720 Lactuca sativa
Lsat_1_v5_gn_2_89521 Lactuca sativa
Lsat_1_v5_gn_3_96320 Lactuca sativa
Lsat_1_v5_gn_4_172021 Lactuca sativa
Lsat_1_v5_gn_5_22700 Lactuca sativa
Manes.02G056100 Manihot esculenta
Manes.06G083300 Manihot esculenta
Manes.14G086600 Manihot esculenta
MBI19_g13319_MAGBIO Magnolia biondii
MD06G1203000 Malus domestica
MD09G1068400 Malus domestica
MD14G1213600 Malus domestica
MD17G1061300 Malus domestica
Medtr3g026110 Medicago truncatula
Medtr6g015370 Medicago truncatula
Medtr7g015120 Medicago truncatula
MELO3C002039.2 Cucumis melo
MELO3C017231.2 Cucumis melo
MELO3C022036.2 Cucumis melo
Migut.D01631 Erythranthe guttata
Migut.H00615 Erythranthe guttata
Migut.K01268 Erythranthe guttata
MSTRG.23879 Avicennia marina
MSTRG.2993 Avicennia marina
MSTRG.3361 Avicennia marina
MSTRG.4485 Avicennia marina
MSTRG.9596 Avicennia marina
Nitab4.5_0000154g0290 Nicotiana tabacum
Nitab4.5_0001485g0020 Nicotiana tabacum
Nitab4.5_0005910g0010 Nicotiana tabacum
Nitab4.5_0007160g0020 Nicotiana tabacum
Nitab4.5_0007918g0030 Nicotiana tabacum
Nitab4.5_0010535g0010 Nicotiana tabacum
Nn4g23454 Nelumbo nucifera
Oeu014417.1 Olea europaea
Oeu017182.1 Olea europaea
Oeu032098.1 Olea europaea
Oeu033398.1 Olea europaea
Oeu044881.3 Olea europaea
Oeu062168.1 Olea europaea
Os03g0418700 Oryza sativa ssp. japonica
Os07g0109400 Oryza sativa ssp. japonica
Os07g0603300 Oryza sativa ssp. japonica
Peaxi162Scf00000g01005 Petunia axillaris
Peaxi162Scf00166g00419 Petunia axillaris
Peaxi162Scf00201g00333 Petunia axillaris
Peaxi162Scf00270g00519 Petunia axillaris
Peaxi162Scf00270g00520 Petunia axillaris
Peaxi162Scf00451g00217 Petunia axillaris
Peaxi162Scf00555g00918 Petunia axillaris
PGR004G2182 Punica granatum
PGR044G0573 Punica granatum
PGR083G1685 Punica granatum
PGSC0003DMG400001462 Solanum tuberosum
PGSC0003DMG400024535 Solanum tuberosum
Phvul.003G183600 Phaseolus vulgaris
Phvul.004G037800 Phaseolus vulgaris
Phvul.008G031580 Phaseolus vulgaris
Phvul.009G202300 Phaseolus vulgaris
Phvul.009G202500 Phaseolus vulgaris
Potri.012G061900 Populus trichocarpa
Potri.015G058900 Populus trichocarpa
Potri.017G095000 Populus trichocarpa
Prupe.3G252400 Prunus persica
Prupe.5G206500 Prunus persica
Psat1g066800 Pisum sativum
Psat3g202840 Pisum sativum
Psat5g202520 Pisum sativum
PSO017G0849 Papaver somniferum
PSO017G6934 Papaver somniferum
PSO478G0756 Papaver somniferum
PSO478G5045 Papaver somniferum
QL02p067404 Quercus lobata
QL04p049596 Quercus lobata
QL10p019883 Quercus lobata
RcHm_v2.0_Chr2g0165601 Rosa chinensis
RcHm_v2.0_Chr3g0476491 Rosa chinensis
RcHm_v2.0_Chr5g0047881 Rosa chinensis
RcHm_v2.0_Chr5g0067151 Rosa chinensis
RcHm_v2.0_Chr7g0183251 Rosa chinensis
Rhsim01G0038100 Rhododendron simsii
Rhsim08G0075400 Rhododendron simsii
Rhsim08G0144700 Rhododendron simsii
Rhsim10G0052000 Rhododendron simsii
Rhsim12G0149000 Rhododendron simsii
Sabra12G0044900 Salix brachista
Sabra15G0084400 Salix brachista
Sabra17G0084200 Salix brachista
SalBow1G0566 Salvia bowleyana
SalBow1G3500 Salvia bowleyana
SalBow1G8326 Salvia bowleyana
SalBow5G2804 Salvia bowleyana
SalBow7G1019 Salvia bowleyana
Sc04g0004410 Simmondsia chinensis
Sc10g0004720 Simmondsia chinensis
Sed0001878 Sechium edule
Sed0007310 Sechium edule
Sed0012134 Sechium edule
Sed0016285 Sechium edule
Sed0016442 Sechium edule
Sed0021333 Sechium edule
SEGI_17249 Sequoiadendron giganteum
SEGI_41162 Sequoiadendron giganteum
SGA_v2.0_scaffold28G11742 Striga asiatica
SGA_v2.0_scaffold4G02373 Striga asiatica
SGA_v2.0_scaffold52G19126 Striga asiatica
Solyc02g089030.1 Solanum lycopersicum
Solyc02g089050.4 Solanum lycopersicum
Solyc03g115000.3 Solanum lycopersicum
Sopen02g033800 Solanum pennellii
Sopen03g034070 Solanum pennellii
Sp1g16590 Schrenkiella parvula
Sp3g01250 Schrenkiella parvula
Sp5g29370 Schrenkiella parvula
Sp6g28510 Schrenkiella parvula
TAR039G0005 Trochodendron aralioides
TAR371G0403 Trochodendron aralioides
TAR374G0252 Trochodendron aralioides
TAR374G0883 Trochodendron aralioides
TAR622G1027 Trochodendron aralioides
TAR629G1877 Trochodendron aralioides
THA.LOC104802976 Tarenaya hassleriana
THA.LOC104812109 Tarenaya hassleriana
THA.LOC104820992 Tarenaya hassleriana
THA.LOC104822328 Tarenaya hassleriana
THA.LOC104822857 Tarenaya hassleriana
Thecc.03G104000 Theobroma cacao
Thecc.04G097400 Theobroma cacao
Thhalv10009952m.g Eutrema salsugineum
Thhalv10012598m.g Eutrema salsugineum
Thhalv10018061m.g Eutrema salsugineum
Thhalv10020021m.g Eutrema salsugineum
TPR.G12178 Trifolium pratense
TPR.G12298 Trifolium pratense
TPR.G20877 Trifolium pratense
TPR.G33423 Trifolium pratense
TPR.G4312 Trifolium pratense
TWI32G0306 Tripterygium wilfordii
TWI60G1021 Tripterygium wilfordii
TWI60G1393 Tripterygium wilfordii
TWI81G0794 Tripterygium wilfordii
unitig_21.g20467 Utricularia gibba
unitig_21.g20468 Utricularia gibba
unitig_21.g20944 Utricularia gibba
unitig_32.g10754 Utricularia gibba
unitig_37.g12719 Utricularia gibba
unitig_52.g17637 Utricularia gibba
unitig_62.g23386 Utricularia gibba
unitig_744.g24378 Utricularia gibba
unitig_748.g8423 Utricularia gibba
vmacro05642 Vaccinium macrocarpon
vmacro16490 Vaccinium macrocarpon
vmacro17617 Vaccinium macrocarpon
vmacro18144 Vaccinium macrocarpon
VMungo0464G0046 Vigna mungo
VMungo0720G2469 Vigna mungo
VMungo1215G1702 Vigna mungo
VMungo1309G2921 Vigna mungo
VMungo1383G0207 Vigna mungo
Zm00001eb095640 Zea mays
Zm00001eb108890 Zea mays
Zm00001eb307290 Zea mays
Zm00001eb326930 Zea mays

User provided reference genes

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