Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p39160 Brassica napus
A05p18190 Brassica napus
A05p34830 Brassica napus
A06p00940 Brassica napus
A08p01500 Brassica napus
Aa31LG10G1660 Aethionema arabicum
Aa31LG10G1670 Aethionema arabicum
Aa31LG8G1800 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1112 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.904 Anthoceros agrestis
Actinidia00870 Actinidia chinensis
Actinidia03647 Actinidia chinensis
Actinidia03648 Actinidia chinensis
Actinidia12620 Actinidia chinensis
Ah.06g187540 Amaranthus hybridus
AL1G62170 Arabidopsis lyrata
AL3G26920 Arabidopsis lyrata
Aqoxy1G01723 Aquilegia oxysepala
Aqoxy1G01726 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.E3Z39S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RU54A6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SDH4Q1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YW8AP0 Arachis hypogaea
AT1G53580 Arabidopsis thaliana
AT1G53590 Arabidopsis thaliana
AT3G14590 Arabidopsis thaliana
ATR0585G029 Amborella trichopoda
ATR0585G035 Amborella trichopoda
AUR62019704 Chenopodium quinoa
AUR62019708 Chenopodium quinoa
AUR62037985 Chenopodium quinoa
AUR62037988 Chenopodium quinoa
BcaB02g10911 Brassica carinata
BcaB04g17072 Brassica carinata
BcaB06g25372 Brassica carinata
BcaB07g33320 Brassica carinata
BcaB08g35411 Brassica carinata
BcaC01g01401 Brassica carinata
BcaC05g29056 Brassica carinata
BcaC05g29058 Brassica carinata
BcaC08g43540 Brassica carinata
BcaC08g44126 Brassica carinata
BcaC09g48428 Brassica carinata
BolC1t04943H Brassica oleracea
BolC1t04947H Brassica oleracea
BolC3t21480H Brassica oleracea
BolC5t33947H Brassica oleracea
BolC6t36007H Brassica oleracea
BolC6t36679H Brassica oleracea
BraA01t03961Z Brassica rapa
BraA05t20712Z Brassica rapa
BraA05t22295Z Brassica rapa
BraA06t23321Z Brassica rapa
BraA08t32202Z Brassica rapa
C01p49860 Brassica napus
C01p49900 Brassica napus
C03p91630 Brassica napus
C05p52680 Brassica napus
C06p09290 Brassica napus
C06p15020 Brassica napus
CAN.G1320.2 Capsicum annuum
CAN.G315.9 Capsicum annuum
CAN.G375.74 Capsicum annuum
CAN.G375.76 Capsicum annuum
CANSAT56G0439 Cannabis sativa
CANSAT56G4466 Cannabis sativa
CANSAT64G1255 Cannabis sativa
CARHR042800 Cardamine hirsuta
CARHR043830 Cardamine hirsuta
CARHR043840 Cardamine hirsuta
CARHR043850 Cardamine hirsuta
CARHR089550 Cardamine hirsuta
CARHR149030 Cardamine hirsuta
CARHR216930 Cardamine hirsuta
CARHR216940 Cardamine hirsuta
CARHR255120 Cardamine hirsuta
CARHR255130 Cardamine hirsuta
Carub.0001s4279 Capsella rubella
Carub.0001s4280 Capsella rubella
Carub.0003s1429 Capsella rubella
Ca_03403_v3 Cicer arietinum L.
Ca_03405_v3 Cicer arietinum L.
CBR_g24050 Chara braunii
CBR_g52354 Chara braunii
CBR_g58829 Chara braunii
CBR_g8131 Chara braunii
Cc05_g10450 Coffea canephora
Cc05_g10460 Coffea canephora
CDE02G0339 Ceratophyllum demersum
CDE02G1772 Ceratophyllum demersum
CDE02G2341 Ceratophyllum demersum
CDE02G2342 Ceratophyllum demersum
CDE02G2527 Ceratophyllum demersum
CDE02G3376 Ceratophyllum demersum
CDE09G1013 Ceratophyllum demersum
Cfa019475 Carpinus fangiana
Ciclev10018996m.g Citrus clementina
Ciclev10021343m.g Citrus clementina
CiPaw.03G191700 Carya illinoinensis
CiPaw.11G067800 Carya illinoinensis
CiPaw.12G046400 Carya illinoinensis
ClCG11G016980 Citrullus lanatus
ClCG11G017000 Citrullus lanatus
COL.COLO4_08889 Corchorus olitorius
COL.COLO4_17437 Corchorus olitorius
Cpa.g.c34167.1 Carica papaya
Cpa.g.sc77.83 Carica papaya
Cre01.g049100 Chlamydomonas reinhardtii
CsaV3_4G032610 Cucumis sativus L.
CsaV3_4G032640 Cucumis sativus L.
CSS0017658 Camellia sinensis var. sinensis
CSS0018182 Camellia sinensis var. sinensis
CSS0026037 Camellia sinensis var. sinensis
CSS0027870 Camellia sinensis var. sinensis
CSS0029038 Camellia sinensis var. sinensis
CSS0030572 Camellia sinensis var. sinensis
CSS0044469 Camellia sinensis var. sinensis
DCAR_017572 Daucus carota
DCAR_017573 Daucus carota
DCAR_019628 Daucus carota
DCAR_025852 Daucus carota
Dinv13327 Davidia involucrata
Dinv13329 Davidia involucrata
Dinv26680 Davidia involucrata
Dinv26682 Davidia involucrata
Duzib187G0194 Durio zibethinus
Duzib213G0109 Durio zibethinus
Duzib213G0773 Durio zibethinus
Duzib268G0118 Durio zibethinus
ECA234G0027 Erigeron canadensis
ECA234G1166 Erigeron canadensis
ECA234G1174 Erigeron canadensis
ECA240G0884 Erigeron canadensis
EL10Ac4g08464 Beta vulgaris
EL10Ac4g08465 Beta vulgaris
Eucgr.A02020 Eucalyptus grandis
Eucgr.F01401 Eucalyptus grandis
Eucgr.F01402 Eucalyptus grandis
Eucgr.F03215 Eucalyptus grandis
Eucgr.F03216 Eucalyptus grandis
Eucgr.L01848 Eucalyptus grandis
FAN02G2152 Fragaria x ananassa
FAN05G1140 Fragaria x ananassa
FAN09G0561 Fragaria x ananassa
FAN11G2256 Fragaria x ananassa
FAN11G2574 Fragaria x ananassa
FAN14G4917 Fragaria x ananassa
FAN16G0240 Fragaria x ananassa
FAN16G2563 Fragaria x ananassa
FAN21G3942 Fragaria x ananassa
FAN25G2855 Fragaria x ananassa
FvH4_3g16980 Fragaria vesca
FvH4_3g17020 Fragaria vesca
FvH4_6g38610 Fragaria vesca
Glyma.13G261200 Glycine max
Glyma.13G261400 Glycine max
Glyma.15G245600 Glycine max
Gohir.A01G043500 Gossypium hirsutum
Gohir.A01G044100 Gossypium hirsutum
Gohir.A04G046400 Gossypium hirsutum
Gohir.A07G155726 Gossypium hirsutum
Gohir.D01G034220 Gossypium hirsutum
Gohir.D01G034600 Gossypium hirsutum
Gohir.D01G034901 Gossypium hirsutum
Gohir.D03G015800 Gossypium hirsutum
Gohir.D04G055900 Gossypium hirsutum
Gohir.D06G025300 Gossypium hirsutum
Gohir.D11G187900 Gossypium hirsutum
Gorai.002G041900 Gossypium raimondii
Gorai.002G042800 Gossypium raimondii
Gorai.002G043100 Gossypium raimondii
Gorai.005G073200 Gossypium raimondii
Gorai.006G053200 Gossypium raimondii
Gorai.009G359900 Gossypium raimondii
Gorai.013G082600 Gossypium raimondii
GSVIVG01000481001 Vitis vinifera
GSVIVG01000623001 Vitis vinifera
GSVIVG01020841001 Vitis vinifera
HanXRQChr03g0072701 Helianthus annuus
HanXRQChr07g0206481 Helianthus annuus
HanXRQChr10g0305671 Helianthus annuus
HanXRQChr10g0305681 Helianthus annuus
HanXRQChr12g0373531 Helianthus annuus
Haze_08475 Corylus avellana
Haze_13535 Corylus avellana
Haze_27488 Corylus avellana
Hma1.2p1_0280F.1_g112850 Hydrangea macrophylla
HPP92_002947 Vanilla planifolia
HPP92_009985 Vanilla planifolia
HPP92_021477 Vanilla planifolia
HPP92_023284 Vanilla planifolia
Hund02324 Selenicereus undatus
Hund10367 Selenicereus undatus
Lalb_Chr01g0016131 Lupinus albus
Lalb_Chr01g0016141 Lupinus albus
Lalb_Chr01g0016151 Lupinus albus
Lalb_Chr20g0109021 Lupinus albus
Lalb_Chr25g0285521 Lupinus albus
Lj1C819T6 Lonicera japonica
Lj3g0005272 Lotus japonicus
Lj3g0022741 Lotus japonicus
Lj8A144G64 Lonicera japonica
Lj8C143T14 Lonicera japonica
LjContig00272g0024686 Lotus japonicus
Lsat_1_v5_gn_0_2340 Lactuca sativa
Lsat_1_v5_gn_5_126041 Lactuca sativa
Lsat_1_v5_gn_5_126060 Lactuca sativa
Lsat_1_v5_gn_9_101380 Lactuca sativa
Manes.02G089400 Manihot esculenta
Manes.03G091048 Manihot esculenta
Manes.15G100600 Manihot esculenta
Mapoly0002s0284 Marchantia polymorpha
Mapoly0005s0081 Marchantia polymorpha
Mapoly0122s0015 Marchantia polymorpha
MBI07_g26364_MAGBIO Magnolia biondii
MBI07_g26365_MAGBIO Magnolia biondii
MBI10_g02221_MAGBIO Magnolia biondii
MBI10_g02223_MAGBIO Magnolia biondii
MBI10_g05866_MAGBIO Magnolia biondii
MBI16_g20738_MAGBIO Magnolia biondii
MCO05G419 Micromonas commoda
MCO11G587 Micromonas commoda
MCO13G496 Micromonas commoda
MD00G1185500 Malus domestica
MD00G1185600 Malus domestica
MD03G1254200 Malus domestica
MD03G1254300 Malus domestica
MD03G1254900 Malus domestica
MD09G1149000 Malus domestica
MD11G1275800 Malus domestica
MD11G1276000 Malus domestica
MD17G1135300 Malus domestica
Medtr2g072180 Medicago truncatula
Medtr2g072190 Medicago truncatula
Medtr5g021570 Medicago truncatula
Medtr5g097770 Medicago truncatula
MELO3C025594.2 Cucumis melo
MELO3C025595.2 Cucumis melo
Migut.M00625 Erythranthe guttata
Migut.M00626 Erythranthe guttata
MSTRG.15019 Avicennia marina
MSTRG.15020 Avicennia marina
MSTRG.6728 Avicennia marina
Nitab4.5_0000639g0070 Nicotiana tabacum
Nitab4.5_0000639g0080 Nicotiana tabacum
Nitab4.5_0005492g0010 Nicotiana tabacum
Nitab4.5_0005492g0050 Nicotiana tabacum
Nitab4.5_0006409g0010 Nicotiana tabacum
Nitab4.5_0006409g0020 Nicotiana tabacum
Nitab4.5_0007142g0010 Nicotiana tabacum
Nitab4.5_0009792g0010 Nicotiana tabacum
Nn3g20715 Nelumbo nucifera
Nn3g20725 Nelumbo nucifera
Nn4g26535 Nelumbo nucifera
Nn4g26545 Nelumbo nucifera
Oeu001313.1 Olea europaea
Oeu006135.1 Olea europaea
Oeu006143.2 Olea europaea
Oeu009875.1 Olea europaea
Oeu026469.1 Olea europaea
Oeu026470.2 Olea europaea
Os01g0242600 Oryza sativa ssp. japonica
Os01g0667200 Oryza sativa ssp. japonica
Os02g0313700 Oryza sativa ssp. japonica
Peaxi162Scf00000g00522 Petunia axillaris
Peaxi162Scf00000g05119 Petunia axillaris
Peaxi162Scf00111g00115 Petunia axillaris
Peaxi162Scf00111g01142 Petunia axillaris
PGR031G3933 Punica granatum
PGR042G3356 Punica granatum
PGR083G0018 Punica granatum
PGR083G0106 Punica granatum
PGSC0003DMG400007053 Solanum tuberosum
PGSC0003DMG400007079 Solanum tuberosum
PGSC0003DMG400008562 Solanum tuberosum
PGSC0003DMG400008571 Solanum tuberosum
PGSC0003DMG400013217 Solanum tuberosum
Phvul.005G062600 Phaseolus vulgaris
Phvul.005G062700 Phaseolus vulgaris
Potri.001G379800 Populus trichocarpa
Potri.001G380100 Populus trichocarpa
Potri.005G204800 Populus trichocarpa
Pp3c11_23120 Physcomitrium patens
Pp3c15_10210 Physcomitrium patens
Pp3c16_25540 Physcomitrium patens
Pp3c18_18010 Physcomitrium patens
Pp3c19_3120 Physcomitrium patens
Pp3c5_28190 Physcomitrium patens
Pp3c7_3910 Physcomitrium patens
Pp3c9_10910 Physcomitrium patens
Pp3c9_13000 Physcomitrium patens
PRCOL_00005441 Prasinoderma coloniale
Prupe.3G177200 Prunus persica
Prupe.4G152200 Prunus persica
Prupe.4G152300 Prunus persica
Psat1g009000 Pisum sativum
Psat1g009080 Pisum sativum
PSO541G4432 Papaver somniferum
PSO541G5530 Papaver somniferum
PSO541G6360 Papaver somniferum
PSO675G5015 Papaver somniferum
PSO675G6085 Papaver somniferum
QL04p069054 Quercus lobata
QL08p044937 Quercus lobata
RcHm_v2.0_Chr1g0347551 Rosa chinensis
RcHm_v2.0_Chr2g0152061 Rosa chinensis
RcHm_v2.0_Chr2g0159501 Rosa chinensis
RcHm_v2.0_Chr2g0159511 Rosa chinensis
RcHm_v2.0_Chr4g0392471 Rosa chinensis
RcHm_v2.0_Chr5g0028301 Rosa chinensis
RcHm_v2.0_Chr5g0028351 Rosa chinensis
RcHm_v2.0_Chr5g0039631 Rosa chinensis
Rhsim06G0186500 Rhododendron simsii
RhsimUnG0205700 Rhododendron simsii
RhsimUnG0205800 Rhododendron simsii
RhsimUnG0205900 Rhododendron simsii
Sabra05G0155400 Salix brachista
Sabra05G0155600 Salix brachista
Sabra16G0250400 Salix brachista
SalBow1G5551 Salvia bowleyana
SalBow8G1908 Salvia bowleyana
SalBow8G2367 Salvia bowleyana
Sc03g0010860 Simmondsia chinensis
Sc03g0010920 Simmondsia chinensis
Sc16g0007860 Simmondsia chinensis
Sed0008182 Sechium edule
Sed0010110 Sechium edule
Sed0012666 Sechium edule
Sed0022537 Sechium edule
SEGI_02719 Sequoiadendron giganteum
SEGI_35320 Sequoiadendron giganteum
SEGI_39358 Sequoiadendron giganteum
SGA_v2.0_scaffold70G23592 Striga asiatica
SGA_v2.0_scaffold73G24332 Striga asiatica
SHI03278 Sapria himalayana
SHI03281 Sapria himalayana
SHI03282 Sapria himalayana
SHI27675 Sapria himalayana
SMO337G0056 Selaginella moellendorffii
SMO364G0689 Selaginella moellendorffii
Solyc07g061930.1 Solanum lycopersicum
Solyc07g061935.1 Solanum lycopersicum
Solyc07g061950.4 Solanum lycopersicum
Solyc07g061960.3 Solanum lycopersicum
Solyc12g011420.2 Solanum lycopersicum
Solyc12g011430.3 Solanum lycopersicum
Sopen07g030220 Solanum pennellii
Sopen07g030230 Solanum pennellii
Sopen12g006770 Solanum pennellii
Sopen12g006780 Solanum pennellii
Sp1g40080 Schrenkiella parvula
Sp1g40090 Schrenkiella parvula
Sp3g12860 Schrenkiella parvula
TAR626G1608 Trochodendron aralioides
TAR627G0628 Trochodendron aralioides
TAR627G0639 Trochodendron aralioides
THA.LOC104822594 Tarenaya hassleriana
THA.LOC104822597 Tarenaya hassleriana
Thecc.01G169600 Theobroma cacao
Thecc.07G141800 Theobroma cacao
Thecc.07G141900 Theobroma cacao
Thhalv10011273m.g Eutrema salsugineum
Thhalv10011701m.g Eutrema salsugineum
Thhalv10020164m.g Eutrema salsugineum
TPR.G19262 Trifolium pratense
TPR.G29673 Trifolium pratense
TPR.G29676 Trifolium pratense
TWI38G0873 Tripterygium wilfordii
TWI38G2140 Tripterygium wilfordii
TWI59G0785 Tripterygium wilfordii
unitig_62.g23092 Utricularia gibba
unitig_899.g15303 Utricularia gibba
vmacro09423 Vaccinium macrocarpon
vmacro09424 Vaccinium macrocarpon
vmacro09425 Vaccinium macrocarpon
vmacro12002 Vaccinium macrocarpon
vmacro13871 Vaccinium macrocarpon
VMungo1080G0123 Vigna mungo
VMungo1080G1562 Vigna mungo
Zm00001eb157380 Zea mays
Zm00001eb203260 Zea mays
Zm00001eb336950 Zea mays

User provided reference genes

Program Settings