Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p40500 Brassica napus
A03p68930 Brassica napus
A05p07870 Brassica napus
A05p07880 Brassica napus
A05p39840 Brassica napus
A09p16930 Brassica napus
Aa31LG2G9540 Aethionema arabicum
Aa31LG5G23410 Aethionema arabicum
Aa31sc189G100 Aethionema arabicum
Aa31sc189G110 Aethionema arabicum
Aa31sc189G30 Aethionema arabicum
Aa31sc189G90 Aethionema arabicum
Actinidia01899 Actinidia chinensis
Actinidia05610 Actinidia chinensis
Actinidia06589 Actinidia chinensis
Actinidia07575 Actinidia chinensis
Actinidia11603 Actinidia chinensis
Actinidia29115 Actinidia chinensis
Ah.01g007200 Amaranthus hybridus
Ah.01g007210 Amaranthus hybridus
Ah.01g024380 Amaranthus hybridus
Ah.09g235760 Amaranthus hybridus
AL2G15390 Arabidopsis lyrata
AL3G20050 Arabidopsis lyrata
AL4G35150 Arabidopsis lyrata
AL4G35170 Arabidopsis lyrata
AL6G10920 Arabidopsis lyrata
Aqoxy1G02572 Aquilegia oxysepala
Aqoxy4G02616 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1R7S2I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3BM42P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3P698T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5ZB6RF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.64KRD1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.824Z9K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KH1URT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KQYN5D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KTV96N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N1AI8B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S8RJ08 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WGSE61 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZK9S7S Arachis hypogaea
AT1G61050 Arabidopsis thaliana
AT2G38150 Arabidopsis thaliana
AT2G38152 Arabidopsis thaliana
AT3G09020 Arabidopsis thaliana
AT5G01250 Arabidopsis thaliana
ATR0618G276 Amborella trichopoda
ATR0624G032 Amborella trichopoda
ATR0680G342 Amborella trichopoda
ATR0684G026 Amborella trichopoda
ATR0691G314 Amborella trichopoda
ATR0776G042 Amborella trichopoda
ATR0776G093 Amborella trichopoda
Atru.chr10.1948 Acer truncatum
Atru.chr8.2217 Acer truncatum
Atru.chr8.2219 Acer truncatum
AUR62014783 Chenopodium quinoa
AUR62016971 Chenopodium quinoa
AUR62027052 Chenopodium quinoa
AUR62030895 Chenopodium quinoa
BcaB04g20310 Brassica carinata
BcaB04g21034 Brassica carinata
BcaB07g31257 Brassica carinata
BcaC02g07491 Brassica carinata
BcaC02g10593 Brassica carinata
BcaC04g22301 Brassica carinata
BcaC05g29635 Brassica carinata
BcaC06g31830 Brassica carinata
BcaC06g31971 Brassica carinata
BcaC09g48003 Brassica carinata
BcaC09g48048 Brassica carinata
BcaC09g48289 Brassica carinata
BolC1t05153H Brassica oleracea
BolC1t05479H Brassica oleracea
BolC4t22510H Brassica oleracea
BolC4t22558H Brassica oleracea
BolC4t22559H Brassica oleracea
BolC5t34540H Brassica oleracea
BolC9t54994H Brassica oleracea
BolC9t60193H Brassica oleracea
BraA01t04085Z Brassica rapa
BraA01t04321Z Brassica rapa
BraA04t18392Z Brassica rapa
BraA05t19753Z Brassica rapa
BraA05t19754Z Brassica rapa
BraA05t22768Z Brassica rapa
BraA09t37330Z Brassica rapa
BraA10t45401Z Brassica rapa
BraSC45t46224Z Brassica rapa
C01p52090 Brassica napus
C01p52100 Brassica napus
C04p09310 Brassica napus
C04p09520 Brassica napus
C04p09530 Brassica napus
C04p25570 Brassica napus
C05p58880 Brassica napus
C09p20970 Brassica napus
CAN.G1087.3 Capsicum annuum
CAN.G1627.19 Capsicum annuum
CANSAT35G0025 Cannabis sativa
CANSAT35G1180 Cannabis sativa
CARHR052200 Cardamine hirsuta
CARHR083360 Cardamine hirsuta
CARHR132740 Cardamine hirsuta
CARHR132750 Cardamine hirsuta
CARHR211590 Cardamine hirsuta
Carub.0002s0415 Capsella rubella
Carub.0003s0815 Capsella rubella
Carub.0003s2928 Capsella rubella
Carub.0004s2012 Capsella rubella
Carub.0004s2013 Capsella rubella
Carub.0006s0063 Capsella rubella
Ca_00322_v3 Cicer arietinum L.
CBR_g17034 Chara braunii
CBR_g19150 Chara braunii
CBR_g19981 Chara braunii
CBR_g19984 Chara braunii
CBR_g19985 Chara braunii
CBR_g41490 Chara braunii
CBR_g46741 Chara braunii
Cc02_g12920 Coffea canephora
Cfa000408 Carpinus fangiana
Cfa017226 Carpinus fangiana
Cfa017228 Carpinus fangiana
Cfa017231 Carpinus fangiana
Ciclev10011728m.g Citrus clementina
Ciclev10013378m.g Citrus clementina
Ciclev10013470m.g Citrus clementina
Ciclev10013606m.g Citrus clementina
Ciclev10013615m.g Citrus clementina
Ciclev10015246m.g Citrus clementina
CiPaw.09G056500 Carya illinoinensis
CiPaw.09G207800 Carya illinoinensis
CiPaw.10G155900 Carya illinoinensis
ClCG01G012100 Citrullus lanatus
ClCG03G005860 Citrullus lanatus
ClCG10G022000 Citrullus lanatus
COL.COLO4_14557 Corchorus olitorius
COL.COLO4_14559 Corchorus olitorius
COL.COLO4_14560 Corchorus olitorius
COL.COLO4_31512 Corchorus olitorius
Cpa.g.sc1028.3 Carica papaya
Cpa.g.sc163.13 Carica papaya
Cre14.g625225 Chlamydomonas reinhardtii
Cre16.g659450 Chlamydomonas reinhardtii
Cre16.g659500 Chlamydomonas reinhardtii
Cre16.g659550 Chlamydomonas reinhardtii
CsaV3_1G012090 Cucumis sativus L.
CsaV3_3G033990 Cucumis sativus L.
CSS0001834 Camellia sinensis var. sinensis
CSS0007782 Camellia sinensis var. sinensis
CSS0012129 Camellia sinensis var. sinensis
CSS0038135 Camellia sinensis var. sinensis
DCAR_008050 Daucus carota
DCAR_015435 Daucus carota
DCAR_018711 Daucus carota
DCAR_028816 Daucus carota
Dinv07530 Davidia involucrata
Dinv14360 Davidia involucrata
Duzib093G1012 Durio zibethinus
Duzib093G1611 Durio zibethinus
Duzib106G0182 Durio zibethinus
Duzib106G0777 Durio zibethinus
Duzib128G1202 Durio zibethinus
Duzib128G1902 Durio zibethinus
Duzib160G0473 Durio zibethinus
Duzib235G0687 Durio zibethinus
ECA234G2566 Erigeron canadensis
EL10Ac8g20335 Beta vulgaris
EL10Ac9g22155 Beta vulgaris
EL10Ac9g22156 Beta vulgaris
Eucgr.A00510 Eucalyptus grandis
Eucgr.E03354 Eucalyptus grandis
Eucgr.K02989 Eucalyptus grandis
FAN02G0069 Fragaria x ananassa
FAN02G2355 Fragaria x ananassa
FAN02G4065 Fragaria x ananassa
FAN05G0133 Fragaria x ananassa
FAN05G1914 Fragaria x ananassa
FAN05G4559 Fragaria x ananassa
FAN09G0844 Fragaria x ananassa
FAN09G1113 Fragaria x ananassa
FAN09G1863 Fragaria x ananassa
FAN09G2674 Fragaria x ananassa
FAN14G2048 Fragaria x ananassa
FAN14G2295 Fragaria x ananassa
FAN14G2750 Fragaria x ananassa
FAN14G3041 Fragaria x ananassa
FAN14G3695 Fragaria x ananassa
FAN14G5592 Fragaria x ananassa
FAN16G0801 Fragaria x ananassa
FAN21G0500 Fragaria x ananassa
FAN25G3058 Fragaria x ananassa
FvH4_3g04760 Fragaria vesca
FvH4_6g11720 Fragaria vesca
FvH4_6g11740 Fragaria vesca
FvH4_6g11750 Fragaria vesca
Glyma.01G114900 Glycine max
Glyma.07G147600 Glycine max
Glyma.13G241600 Glycine max
Gohir.A04G089300 Gossypium hirsutum
Gohir.A04G089400 Gossypium hirsutum
Gohir.A06G125400 Gossypium hirsutum
Gohir.A09G164400 Gossypium hirsutum
Gohir.A10G023700 Gossypium hirsutum
Gohir.D04G129500 Gossypium hirsutum
Gohir.D04G129600 Gossypium hirsutum
Gohir.D06G130500 Gossypium hirsutum
Gohir.D09G160000 Gossypium hirsutum
Gohir.D10G024400 Gossypium hirsutum
Gorai.006G181600 Gossypium raimondii
Gorai.010G152300 Gossypium raimondii
Gorai.011G025700 Gossypium raimondii
Gorai.012G113000 Gossypium raimondii
Gorai.012G113100 Gossypium raimondii
GSVIVG01002627001 Vitis vinifera
GSVIVG01033978001 Vitis vinifera
HanXRQChr04g0123961 Helianthus annuus
HanXRQChr10g0301081 Helianthus annuus
HanXRQChr13g0406281 Helianthus annuus
HanXRQChr15g0464021 Helianthus annuus
HanXRQChr16g0518221 Helianthus annuus
HanXRQChr17g0560351 Helianthus annuus
Haze_06508 Corylus avellana
Haze_20975 Corylus avellana
Haze_20978 Corylus avellana
Hma1.2p1_0036F.1_g023660 Hydrangea macrophylla
Hma1.2p1_0191F.1_g083100 Hydrangea macrophylla
Hma1.2p1_0252F.1_g102750 Hydrangea macrophylla
Hma1.2p1_0362F.1_g136080 Hydrangea macrophylla
Hma1.2p1_0975F.1_g243093 Hydrangea macrophylla
Hma1.2p1_1103F.1_g257310 Hydrangea macrophylla
Hund00408 Selenicereus undatus
Lalb_Chr18g0059741 Lupinus albus
Lj1g0013328 Lotus japonicus
Lj1P1208T12 Lonicera japonica
Lj3P955T14 Lonicera japonica
Lj6g0013052 Lotus japonicus
Lsat_1_v5_gn_4_54580 Lactuca sativa
Lsat_1_v5_gn_5_155220 Lactuca sativa
Lsat_1_v5_gn_7_19261 Lactuca sativa
Lsat_1_v5_gn_9_33741 Lactuca sativa
Manes.08G090400 Manihot esculenta
Manes.09G108000 Manihot esculenta
Manes.16G024800 Manihot esculenta
Manes.17G042951 Manihot esculenta
Mapoly0028s0107 Marchantia polymorpha
MBI14_g38381_MAGBIO Magnolia biondii
MBI14_g41801_MAGBIO Magnolia biondii
MBI18_g17019_MAGBIO Magnolia biondii
MD04G1149400 Malus domestica
MD04G1149800 Malus domestica
MD05G1317900 Malus domestica
MD12G1163900 Malus domestica
MD12G1164200 Malus domestica
Medtr2g013300 Medicago truncatula
Medtr7g067510 Medicago truncatula
MELO3C002582.2 Cucumis melo
MELO3C009180.2 Cucumis melo
Migut.H01507 Erythranthe guttata
Migut.J00186 Erythranthe guttata
Migut.L02002 Erythranthe guttata
Migut.M01179 Erythranthe guttata
MSTRG.14685 Avicennia marina
MSTRG.19019 Avicennia marina
Nitab4.5_0000119g0200 Nicotiana tabacum
Nitab4.5_0003347g0030 Nicotiana tabacum
Nitab4.5_0003668g0040 Nicotiana tabacum
Nn1g04007 Nelumbo nucifera
Nn1g06620 Nelumbo nucifera
Nn1g09304 Nelumbo nucifera
Nn2g11436 Nelumbo nucifera
Nn2g13665 Nelumbo nucifera
Nn3g20291 Nelumbo nucifera
Oeu015025.1 Olea europaea
Oeu030514.1 Olea europaea
Oeu038233.2 Olea europaea
Oeu050831.1 Olea europaea
Oeu053948.1 Olea europaea
Os04g0529700 Oryza sativa ssp. japonica
Peaxi162Scf00014g00062 Petunia axillaris
Peaxi162Scf00141g00036 Petunia axillaris
Peaxi162Scf01163g00021 Petunia axillaris
PGR004G1440 Punica granatum
PGR031G1283 Punica granatum
PGR031G3102 Punica granatum
PGR042G0133 Punica granatum
PGSC0003DMG400019126 Solanum tuberosum
PGSC0003DMG400022433 Solanum tuberosum
Phvul.006G188000 Phaseolus vulgaris
Phvul.008G105700 Phaseolus vulgaris
Phvul.010G003100 Phaseolus vulgaris
Potri.004G039300 Populus trichocarpa
Potri.006G098900 Populus trichocarpa
Potri.011G047700 Populus trichocarpa
Potri.016G114200 Populus trichocarpa
Pp3c11_11530 Physcomitrium patens
Pp3c9_4000 Physcomitrium patens
Prupe.2G284900 Prunus persica
Prupe.3G020300 Prunus persica
Prupe.4G042800 Prunus persica
Prupe.6G274400 Prunus persica
Prupe.6G274700 Prunus persica
Psat1g205920 Pisum sativum
Psat3g130360 Pisum sativum
PSO339G2127 Papaver somniferum
PSO384G3437 Papaver somniferum
PSO675G3603 Papaver somniferum
QL05p039326 Quercus lobata
QL07p035868 Quercus lobata
QL07p035886 Quercus lobata
QL10p057203 Quercus lobata
RcHm_v2.0_Chr3g0463491 Rosa chinensis
RcHm_v2.0_Chr3g0463521 Rosa chinensis
RcHm_v2.0_Chr3g0463531 Rosa chinensis
RcHm_v2.0_Chr5g0007781 Rosa chinensis
Rhsim02G0123700 Rhododendron simsii
Rhsim05G0210600 Rhododendron simsii
Sabra04G0024100 Salix brachista
Sabra06G0075900 Salix brachista
Sabra11G0033100 Salix brachista
Sabra16G0109300 Salix brachista
SalBow4G2987 Salvia bowleyana
SalBow5G1739 Salvia bowleyana
SalBow7G2777 Salvia bowleyana
SalBow7G3362 Salvia bowleyana
SalBow8G1657 Salvia bowleyana
Sc01g0006510 Simmondsia chinensis
Sc01g0006520 Simmondsia chinensis
Sc17g0006310 Simmondsia chinensis
Sed0000123 Sechium edule
Sed0011459 Sechium edule
SEGI_07134 Sequoiadendron giganteum
SEGI_24822 Sequoiadendron giganteum
SGA_v2.0_scaffold159G37658 Striga asiatica
SGA_v2.0_scaffold22G09778 Striga asiatica
SGA_v2.0_scaffold24G10416 Striga asiatica
SGA_v2.0_scaffold85G26749 Striga asiatica
SHI01843 Sapria himalayana
SMO201G0049 Selaginella moellendorffii
Solyc02g078590.1 Solanum lycopersicum
Solyc09g014390.1 Solanum lycopersicum
Solyc10g076780.1 Solanum lycopersicum
Sopen02g023450 Solanum pennellii
Sopen10g028410 Solanum pennellii
Sp2g03470 Schrenkiella parvula
Sp3g07440 Schrenkiella parvula
Sp4g20470 Schrenkiella parvula
SpUn0322_0010 Schrenkiella parvula
TAR623G0436 Trochodendron aralioides
TAR623G1023 Trochodendron aralioides
TAR626G1266 Trochodendron aralioides
TAR627G0216 Trochodendron aralioides
TAR627G1121 Trochodendron aralioides
TAR633G2058 Trochodendron aralioides
THA.LOC104805842 Tarenaya hassleriana
THA.LOC104806605 Tarenaya hassleriana
THA.LOC104806606 Tarenaya hassleriana
THA.LOC104807017 Tarenaya hassleriana
THA.LOC104809572 Tarenaya hassleriana
THA.LOC104816211 Tarenaya hassleriana
Thecc.05G018900 Theobroma cacao
Thecc.05G019100 Theobroma cacao
Thecc.05G019200 Theobroma cacao
Thecc.06G191700 Theobroma cacao
Thhalv10015400m.g Eutrema salsugineum
Thhalv10016818m.g Eutrema salsugineum
Thhalv10017675m.g Eutrema salsugineum
Thhalv10022431m.g Eutrema salsugineum
Thhalv10023465m.g Eutrema salsugineum
TPR.G29044 Trifolium pratense
TPR.G32770 Trifolium pratense
TPR.G8147 Trifolium pratense
TWI38G0660 Tripterygium wilfordii
TWI63G0456 Tripterygium wilfordii
TWI74G0968 Tripterygium wilfordii
unitig_22.g6743 Utricularia gibba
VMungo0331G0604 Vigna mungo
VMungo0540G0263 Vigna mungo
VMungo1383G0527 Vigna mungo
Zm00001eb427160 Zea mays

User provided reference genes

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