Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p43250 Brassica napus
A06p30970 Brassica napus
A09p08600 Brassica napus
A10p25300 Brassica napus
Aa31LG1G17610 Aethionema arabicum
Aa31LG1G17620 Aethionema arabicum
Aa31LG3G14740 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3098 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.2858 Anthoceros agrestis
Actinidia01860 Actinidia chinensis
Actinidia04408 Actinidia chinensis
Actinidia06538 Actinidia chinensis
Actinidia21039 Actinidia chinensis
Actinidia23970 Actinidia chinensis
Actinidia28041 Actinidia chinensis
Actinidia28042 Actinidia chinensis
Actinidia39397 Actinidia chinensis
Ah.01g017500 Amaranthus hybridus
Ah.01g017510 Amaranthus hybridus
Ah.06g194250 Amaranthus hybridus
AL6G23410 Arabidopsis lyrata
AL8G41640 Arabidopsis lyrata
AL8G41650 Arabidopsis lyrata
Aqoxy2G00128 Aquilegia oxysepala
Aqoxy5G01918 Aquilegia oxysepala
Aqoxy6G00711 Aquilegia oxysepala
Aqoxy7G01256 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.48A50S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GHW2P2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KKIJ5Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T23UYN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TKPQ9K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WQQ6NT Arachis hypogaea
AT5G12860 Arabidopsis thaliana
AT5G64280 Arabidopsis thaliana
AT5G64290 Arabidopsis thaliana
ATR0605G025 Amborella trichopoda
ATR0684G121 Amborella trichopoda
Atru.chr3.2726 Acer truncatum
Atru.chr6.1215 Acer truncatum
AUR62000117 Chenopodium quinoa
AUR62010163 Chenopodium quinoa
AUR62010164 Chenopodium quinoa
AUR62013163 Chenopodium quinoa
AUR62013164 Chenopodium quinoa
AUR62019297 Chenopodium quinoa
BcaB01g05395 Brassica carinata
BcaB04g19525 Brassica carinata
BcaB04g19965 Brassica carinata
BcaB07g29733 Brassica carinata
BcaB07g30802 Brassica carinata
BcaB08g37016 Brassica carinata
BcaC03g18254 Brassica carinata
BcaC04g19175 Brassica carinata
BolC2t12396H Brassica oleracea
BolC3t18458H Brassica oleracea
BolC9t53883H Brassica oleracea
BolC9t59268H Brassica oleracea
BraA02t09246Z Brassica rapa
BraA06t26039Z Brassica rapa
BraA09t36509Z Brassica rapa
BraA10t44592Z Brassica rapa
C02p63270 Brassica napus
C03p61990 Brassica napus
C09p09720 Brassica napus
C09p64310 Brassica napus
CAN.G1789.1 Capsicum annuum
CAN.G483.5 Capsicum annuum
CAN.G523.40 Capsicum annuum
CAN.G905.9 Capsicum annuum
CANSAT11G2559 Cannabis sativa
CANSAT54G0044 Cannabis sativa
CARHR200590 Cardamine hirsuta
CARHR278190 Cardamine hirsuta
CARHR278200 Cardamine hirsuta
Carub.0006s1105 Capsella rubella
Carub.0008s2507 Capsella rubella
Carub.0008s2508 Capsella rubella
Ca_00147_v3 Cicer arietinum L.
Ca_11282_v3 Cicer arietinum L.
CBR_g23295 Chara braunii
CBR_g87440 Chara braunii
CBR_g8933 Chara braunii
Cc02_g21170 Coffea canephora
Cc07_g14560 Coffea canephora
Cc08_g17180 Coffea canephora
CDE03G0067 Ceratophyllum demersum
CDE03G0159 Ceratophyllum demersum
CDE03G0213 Ceratophyllum demersum
CDE05G1493 Ceratophyllum demersum
CDE06G1644 Ceratophyllum demersum
CDE10G0225 Ceratophyllum demersum
Cfa005679 Carpinus fangiana
Cfa009768 Carpinus fangiana
Ciclev10014769m.g Citrus clementina
Ciclev10028114m.g Citrus clementina
CiPaw.05G032600 Carya illinoinensis
CiPaw.06G155700 Carya illinoinensis
CiPaw.13G161100 Carya illinoinensis
ClCG02G023250 Citrullus lanatus
ClCG10G009350 Citrullus lanatus
COL.COLO4_02786 Corchorus olitorius
COL.COLO4_32317 Corchorus olitorius
Cpa.g.c31478.1 Carica papaya
Cpa.g.sc84.58 Carica papaya
Cre06.g260450 Chlamydomonas reinhardtii
Cre17.g713200 Chlamydomonas reinhardtii
Cre17.g713350 Chlamydomonas reinhardtii
CsaV3_4G009550 Cucumis sativus L.
CsaV3_4G024240 Cucumis sativus L.
CSS0015636 Camellia sinensis var. sinensis
CSS0018404 Camellia sinensis var. sinensis
CSS0026917 Camellia sinensis var. sinensis
CSS0031293 Camellia sinensis var. sinensis
CSS0041973 Camellia sinensis var. sinensis
DCAR_001771 Daucus carota
DCAR_011668 Daucus carota
DCAR_021878 Daucus carota
DCAR_029950 Daucus carota
Dinv09005 Davidia involucrata
Dinv13236 Davidia involucrata
Dinv24169 Davidia involucrata
Dinv36263 Davidia involucrata
Duzib132G0577 Durio zibethinus
Duzib150G1517 Durio zibethinus
Duzib168G0359 Durio zibethinus
Duzib248G0943 Durio zibethinus
ECA233G1296 Erigeron canadensis
ECA234G1023 Erigeron canadensis
ECA240G0138 Erigeron canadensis
ECA246G3092 Erigeron canadensis
ECA248G2930 Erigeron canadensis
EL10Ac4g10256 Beta vulgaris
EL10Ac4g10273 Beta vulgaris
EL10Ac9g21520 Beta vulgaris
Eucgr.G00873 Eucalyptus grandis
Eucgr.J00769 Eucalyptus grandis
FAN11G0250 Fragaria x ananassa
FAN15G0026 Fragaria x ananassa
FAN16G1981 Fragaria x ananassa
FAN20G1136 Fragaria x ananassa
FAN21G1446 Fragaria x ananassa
FAN25G2948 Fragaria x ananassa
FvH4_2g11840 Fragaria vesca
FvH4_3g28880 Fragaria vesca
Glyma.08G177400 Glycine max
Glyma.11G133800 Glycine max
Glyma.12G058000 Glycine max
Glyma.13G086700 Glycine max
Glyma.15G055600 Glycine max
Gohir.A03G175400 Gossypium hirsutum
Gohir.A09G114600 Gossypium hirsutum
Gohir.A13G069000 Gossypium hirsutum
Gohir.D02G199100 Gossypium hirsutum
Gohir.D09G037940 Gossypium hirsutum
Gohir.D09G111300 Gossypium hirsutum
Gohir.D09G174050 Gossypium hirsutum
Gohir.D13G053000 Gossypium hirsutum
Gorai.005G130700 Gossypium raimondii
Gorai.005G223500 Gossypium raimondii
Gorai.006G129000 Gossypium raimondii
Gorai.009G127300 Gossypium raimondii
Gorai.011G165400 Gossypium raimondii
Gorai.013G059600 Gossypium raimondii
GSVIVG01015673001 Vitis vinifera
GSVIVG01025268001 Vitis vinifera
HanXRQChr03g0067521 Helianthus annuus
HanXRQChr10g0291111 Helianthus annuus
HanXRQChr10g0303611 Helianthus annuus
HanXRQChr13g0405851 Helianthus annuus
HanXRQChr13g0420821 Helianthus annuus
HanXRQChr15g0469131 Helianthus annuus
HanXRQChr15g0469181 Helianthus annuus
HanXRQChr15g0469191 Helianthus annuus
HanXRQChr15g0469201 Helianthus annuus
HanXRQChr15g0469211 Helianthus annuus
HanXRQChr15g0469311 Helianthus annuus
HanXRQChr15g0469441 Helianthus annuus
HanXRQChr15g0478511 Helianthus annuus
HanXRQChr17g0550961 Helianthus annuus
HanXRQChr17g0551941 Helianthus annuus
HanXRQChr17g0551951 Helianthus annuus
Haze_10574 Corylus avellana
Haze_23134 Corylus avellana
Hma1.2p1_0522F.1_g171830 Hydrangea macrophylla
Hma1.2p1_0784F.1_g217190 Hydrangea macrophylla
Hma1.2p1_0861F.1_g229690 Hydrangea macrophylla
HPP92_005987 Vanilla planifolia
HPP92_023575 Vanilla planifolia
Hund00075 Selenicereus undatus
Hund06369 Selenicereus undatus
Hund07512 Selenicereus undatus
Hund07513 Selenicereus undatus
Hund22032 Selenicereus undatus
Lalb_Chr03g0026341 Lupinus albus
Lalb_Chr15g0090371 Lupinus albus
Lalb_Chr20g0122821 Lupinus albus
Lalb_Chr24g0397091 Lupinus albus
Lj1A331T23 Lonicera japonica
Lj2A539T42 Lonicera japonica
Lj2C539T5 Lonicera japonica
Lj3g0011907 Lotus japonicus
Lj5A234T82 Lonicera japonica
Lj6g0004369 Lotus japonicus
Lj9C349T1 Lonicera japonica
Lsat_1_v5_gn_1_66101 Lactuca sativa
Lsat_1_v5_gn_5_108701 Lactuca sativa
Lsat_1_v5_gn_5_46480 Lactuca sativa
Lsat_1_v5_gn_5_46500 Lactuca sativa
Lsat_1_v5_gn_9_116800 Lactuca sativa
Manes.06G164600 Manihot esculenta
Manes.07G035300 Manihot esculenta
Manes.10G103900 Manihot esculenta
Manes.14G002500 Manihot esculenta
Mapoly0011s0175 Marchantia polymorpha
Mapoly0049s0084 Marchantia polymorpha
Mapoly0100s0052 Marchantia polymorpha
MBI01_g18880_MAGBIO Magnolia biondii
MBI06_g22315_MAGBIO Magnolia biondii
MCO04G041 Micromonas commoda
MCO04G126 Micromonas commoda
MCO09G050 Micromonas commoda
MCO14G580 Micromonas commoda
MD03G1175800 Malus domestica
MD05G1045600 Malus domestica
MD10G1052600 Malus domestica
MD11G1193500 Malus domestica
Medtr2g009220 Medicago truncatula
Medtr4g065007 Medicago truncatula
MELO3C014596.2 Cucumis melo
MELO3C024824.2 Cucumis melo
Migut.B00580 Erythranthe guttata
Migut.D00599 Erythranthe guttata
Migut.H02324 Erythranthe guttata
Migut.H02325 Erythranthe guttata
Migut.N01083 Erythranthe guttata
Migut.N02316 Erythranthe guttata
MSTRG.12469 Avicennia marina
MSTRG.17592 Avicennia marina
MSTRG.2586 Avicennia marina
Nitab4.5_0000209g0230 Nicotiana tabacum
Nitab4.5_0000241g0160 Nicotiana tabacum
Nitab4.5_0000863g0080 Nicotiana tabacum
Nitab4.5_0003959g0070 Nicotiana tabacum
Nitab4.5_0005819g0020 Nicotiana tabacum
Nitab4.5_0006559g0010 Nicotiana tabacum
Nitab4.5_0008985g0030 Nicotiana tabacum
Nitab4.5_0011210g0020 Nicotiana tabacum
Nn037s41628 Nelumbo nucifera
Nn1g05462 Nelumbo nucifera
Nn2g15384 Nelumbo nucifera
Nn2g15401 Nelumbo nucifera
Nn2g15411 Nelumbo nucifera
Nn3g21636 Nelumbo nucifera
Nn3g21637 Nelumbo nucifera
Nn5g29996 Nelumbo nucifera
Nn7g36197 Nelumbo nucifera
Oeu000259.1 Olea europaea
Oeu007916.1 Olea europaea
Oeu015665.1 Olea europaea
Oeu015879.1 Olea europaea
Oeu019239.1 Olea europaea
Oeu025866.1 Olea europaea
Oeu043296.1 Olea europaea
Oeu063321.1 Olea europaea
Os08g0481800 Oryza sativa ssp. japonica
Os09g0469950 Oryza sativa ssp. japonica
Os09g0470000 Oryza sativa ssp. japonica
Os12g0515400 Oryza sativa ssp. japonica
Peaxi162Scf00004g02316 Petunia axillaris
Peaxi162Scf00237g00149 Petunia axillaris
Peaxi162Scf01060g00139 Petunia axillaris
PGR042G2718 Punica granatum
PGR119G1402 Punica granatum
PGSC0003DMG400006797 Solanum tuberosum
PGSC0003DMG400007359 Solanum tuberosum
PGSC0003DMG400012543 Solanum tuberosum
PGSC0003DMG400016147 Solanum tuberosum
Phvul.006G204300 Phaseolus vulgaris
Phvul.011G059900 Phaseolus vulgaris
Potri.001G258600 Populus trichocarpa
Potri.001G310600 Populus trichocarpa
Potri.009G053800 Populus trichocarpa
Potri.017G050500 Populus trichocarpa
Pp3c17_13010 Physcomitrium patens
Pp3c18_1460 Physcomitrium patens
Pp3c18_1490 Physcomitrium patens
Pp3c1_39650 Physcomitrium patens
Pp3c2_5250 Physcomitrium patens
PRCOL_00001596 Prasinoderma coloniale
PRCOL_00003401 Prasinoderma coloniale
PRCOL_00005925 Prasinoderma coloniale
Prupe.4G248000 Prunus persica
Prupe.8G065200 Prunus persica
Psat1g215760 Pisum sativum
Psat7g212080 Pisum sativum
PSO210G3020 Papaver somniferum
PSO210G5994 Papaver somniferum
PSO447G0172 Papaver somniferum
PSO700G0052 Papaver somniferum
QL01p004767 Quercus lobata
QL05p001546 Quercus lobata
QL07p010979 Quercus lobata
QL11p023132 Quercus lobata
QL11p023143 Quercus lobata
RcHm_v2.0_Chr5g0051981 Rosa chinensis
RcHm_v2.0_Chr6g0271491 Rosa chinensis
Rhsim01G0191600 Rhododendron simsii
Rhsim05G0103900 Rhododendron simsii
Rhsim10G0167700 Rhododendron simsii
Rhsim10G0167800 Rhododendron simsii
Sabra09G0039100 Salix brachista
Sabra16G0158300 Salix brachista
Sabra16G0196300 Salix brachista
SalBow3G2233 Salvia bowleyana
SalBow3G3080 Salvia bowleyana
SalBow5G5273 Salvia bowleyana
SalBow6G1978 Salvia bowleyana
SalBow8G3065 Salvia bowleyana
Sc08g0003700 Simmondsia chinensis
Sc08g0003710 Simmondsia chinensis
Sc09g0000690 Simmondsia chinensis
Sed0001047 Sechium edule
Sed0013372 Sechium edule
Sed0023554 Sechium edule
SEGI_11130 Sequoiadendron giganteum
SEGI_33205 Sequoiadendron giganteum
SEGI_36553 Sequoiadendron giganteum
SGA_v2.0_scaffold108G30898 Striga asiatica
SGA_v2.0_scaffold14G07139 Striga asiatica
SGA_v2.0_scaffold195G40819 Striga asiatica
SGA_v2.0_scaffold42G16103 Striga asiatica
SGA_v2.0_scaffold8G04594 Striga asiatica
SHI04973 Sapria himalayana
SHI04974 Sapria himalayana
SMO012G0022 Selaginella moellendorffii
SMO141G0248 Selaginella moellendorffii
SMO353G0233 Selaginella moellendorffii
Solyc01g105540.4 Solanum lycopersicum
Solyc11g010290.2 Solanum lycopersicum
Solyc11g065830.2 Solanum lycopersicum
Solyc12g036670.1 Solanum lycopersicum
Sopen01g048000 Solanum pennellii
Sopen11g005070 Solanum pennellii
Sopen11g025580 Solanum pennellii
Sp2g27340 Schrenkiella parvula
Sp2g27350 Schrenkiella parvula
Sp6g31090 Schrenkiella parvula
TAR381G0976 Trochodendron aralioides
TAR623G1461 Trochodendron aralioides
TAR625G1295 Trochodendron aralioides
TAR633G0802 Trochodendron aralioides
THA.LOC104799658 Tarenaya hassleriana
THA.LOC104799874 Tarenaya hassleriana
THA.LOC104799878 Tarenaya hassleriana
THA.LOC104811166 Tarenaya hassleriana
THA.LOC104818445 Tarenaya hassleriana
Thecc.02G133700 Theobroma cacao
Thecc.09G233000 Theobroma cacao
Thhalv10003922m.g Eutrema salsugineum
Thhalv10003941m.g Eutrema salsugineum
Thhalv10013154m.g Eutrema salsugineum
TPR.G25249 Trifolium pratense
TPR.G31971 Trifolium pratense
TWI23G1201 Tripterygium wilfordii
TWI32G0018 Tripterygium wilfordii
TWI59G1377 Tripterygium wilfordii
TWI60G1385 Tripterygium wilfordii
unitig_22.g6204 Utricularia gibba
unitig_27.g25350 Utricularia gibba
unitig_27.g25351 Utricularia gibba
unitig_52.g17427 Utricularia gibba
unitig_62.g23627 Utricularia gibba
unitig_699.g19579 Utricularia gibba
vmacro12716 Vaccinium macrocarpon
vmacro12986 Vaccinium macrocarpon
vmacro12987 Vaccinium macrocarpon
vmacro19945 Vaccinium macrocarpon
vmacro19946 Vaccinium macrocarpon
VMungo0540G0243 Vigna mungo
VMungo0540G0782 Vigna mungo
VMungo1127G1863 Vigna mungo
Zm00001eb033390 Zea mays
Zm00001eb101270 Zea mays
Zm00001eb200110 Zea mays
Zm00001eb334520 Zea mays
Zm00001eb410930 Zea mays

User provided reference genes

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