Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p02660 Brassica napus
A03p10650 Brassica napus
A03p37210 Brassica napus
A05p37730 Brassica napus
A10p18530 Brassica napus
A10p30140 Brassica napus
Aa31sc52G70 Aethionema arabicum
Actinidia07932 Actinidia chinensis
Ah.08g223650 Amaranthus hybridus
Ah.15g090550 Amaranthus hybridus
AL3G23160 Arabidopsis lyrata
AL6G16300 Arabidopsis lyrata
AL6G33270 Arabidopsis lyrata
Aqoxy2G01020 Aquilegia oxysepala
Aqoxy3G03699 Aquilegia oxysepala
Aqoxy4G02696 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.8QQ9KG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DY2W05 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DY9K7Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q3K67F Arachis hypogaea
AT3G11600 Arabidopsis thaliana
AT5G06270 Arabidopsis thaliana
AT5G22270 Arabidopsis thaliana
ATR0772G118 Amborella trichopoda
Atru.chr3.3154 Acer truncatum
Atru.chr8.1412 Acer truncatum
AUR62006263 Chenopodium quinoa
AUR62028513 Chenopodium quinoa
BcaB01g04719 Brassica carinata
BcaB01g05731 Brassica carinata
BcaB04g18652 Brassica carinata
BcaB04g21126 Brassica carinata
BcaB05g21676 Brassica carinata
BcaB05g22740 Brassica carinata
BcaB06g25603 Brassica carinata
BcaB08g36443 Brassica carinata
BcaC01g04100 Brassica carinata
BcaC01g06595 Brassica carinata
BcaC03g13870 Brassica carinata
BcaC04g19563 Brassica carinata
BcaC05g29350 Brassica carinata
BcaC06g32346 Brassica carinata
BcaC06g32358 Brassica carinata
BcaC06g32359 Brassica carinata
BcaC09g48183 Brassica carinata
BNapus_Darmor_BZH_scaffold_145p00050 Brassica napus
BNapus_Darmor_BZH_scaffold_38p00780 Brassica napus
BolC1t05304H Brassica oleracea
BolC2t06230H Brassica oleracea
BolC2t07145H Brassica oleracea
BolC3t12854H Brassica oleracea
BolC3t13699H Brassica oleracea
BolC3t16768H Brassica oleracea
BolC5t34297H Brassica oleracea
BolC9t58306H Brassica oleracea
BolC9t59800H Brassica oleracea
BraA01t04173Z Brassica rapa
BraA02t04875Z Brassica rapa
BraA02t05647Z Brassica rapa
BraA03t09627Z Brassica rapa
BraA03t10377Z Brassica rapa
BraA03t12880Z Brassica rapa
BraA05t22568Z Brassica rapa
BraA10t43933Z Brassica rapa
BraA10t45052Z Brassica rapa
C02p02640 Brassica napus
C02p10750 Brassica napus
C03p03060 Brassica napus
C03p12260 Brassica napus
C05p56330 Brassica napus
C09p54380 Brassica napus
C09p70550 Brassica napus
CAN.G226.9 Capsicum annuum
CARHR086160 Cardamine hirsuta
CARHR191290 Cardamine hirsuta
CARHR206990 Cardamine hirsuta
Carub.0003s1093 Capsella rubella
Carub.0006s0516 Capsella rubella
Carub.0006s2001 Capsella rubella
Ca_01642_v3 Cicer arietinum L.
Ca_09037_v3 Cicer arietinum L.
Ca_11725_v3 Cicer arietinum L.
Cc00_g18340 Coffea canephora
CDE04G1292 Ceratophyllum demersum
CDE06G1436 Ceratophyllum demersum
CDE12G0589 Ceratophyllum demersum
Cfa009974 Carpinus fangiana
Cfa016662 Carpinus fangiana
Ciclev10013147m.g Citrus clementina
Ciclev10017988m.g Citrus clementina
Ciclev10029587m.g Citrus clementina
CiPaw.09G018100 Carya illinoinensis
CiPaw.10G014800 Carya illinoinensis
CiPaw.13G042700 Carya illinoinensis
CiPaw.13G132200 Carya illinoinensis
CiPaw.13G132300 Carya illinoinensis
CiPaw.14G096700 Carya illinoinensis
ClCG01G011650 Citrullus lanatus
ClCG02G022350 Citrullus lanatus
ClCG04G010320 Citrullus lanatus
ClCG08G008390 Citrullus lanatus
ClCG10G018560 Citrullus lanatus
COL.COLO4_22643 Corchorus olitorius
COL.COLO4_29621 Corchorus olitorius
Cpa.g.sc195.37 Carica papaya
CsaV3_3G037690 Cucumis sativus L.
CsaV3_6G004360 Cucumis sativus L.
CsaV3_6G004370 Cucumis sativus L.
CsaV3_6G038480 Cucumis sativus L.
CsaV3_6G040940 Cucumis sativus L.
CSS0029192 Camellia sinensis var. sinensis
CSS0034674 Camellia sinensis var. sinensis
CSS0036703 Camellia sinensis var. sinensis
CSS0040873 Camellia sinensis var. sinensis
CSS0046605 Camellia sinensis var. sinensis
DCAR_009174 Daucus carota
DCAR_020726 Daucus carota
Dinv21143 Davidia involucrata
Dinv21698 Davidia involucrata
Dinv22798 Davidia involucrata
Dinv31738 Davidia involucrata
Duzib093G1761 Durio zibethinus
Duzib106G0445 Durio zibethinus
Duzib128G0359 Durio zibethinus
Duzib150G0725 Durio zibethinus
ECA233G2322 Erigeron canadensis
ECA238G0917 Erigeron canadensis
ECA248G3365 Erigeron canadensis
EL10Ac7g16324 Beta vulgaris
EL10Ac7g16821 Beta vulgaris
Eucgr.A02613 Eucalyptus grandis
Eucgr.J00534 Eucalyptus grandis
Eucgr.K02603 Eucalyptus grandis
FAN02G0800 Fragaria x ananassa
FAN05G2851 Fragaria x ananassa
FAN05G3938 Fragaria x ananassa
FAN09G1589 Fragaria x ananassa
FAN14G5362 Fragaria x ananassa
FvH4_6g19800 Fragaria vesca
Glyma.02G199900 Glycine max
Glyma.02G200200 Glycine max
Glyma.03G199800 Glycine max
Glyma.10G076600 Glycine max
Glyma.10G077100 Glycine max
Glyma.10G077200 Glycine max
Glyma.10G077300 Glycine max
Glyma.10G077500 Glycine max
Glyma.10G078100 Glycine max
Glyma.10G080900 Glycine max
Glyma.11G180600 Glycine max
Glyma.12G093000 Glycine max
Glyma.12G187000 Glycine max
Glyma.12G187100 Glycine max
Glyma.12G187200 Glycine max
Glyma.13G314200 Glycine max
Glyma.13G314400 Glycine max
Glyma.15G209400 Glycine max
Glyma.15G209500 Glycine max
Glyma.15G209700 Glycine max
Glyma.16G045600 Glycine max
Glyma.18G165300 Glycine max
Glyma.18G165500 Glycine max
Glyma.19G197400 Glycine max
Glyma.20G008100 Glycine max
Gohir.A01G202900 Gossypium hirsutum
Gohir.A04G060300 Gossypium hirsutum
Gohir.A05G078800 Gossypium hirsutum
Gohir.A07G111600 Gossypium hirsutum
Gohir.A08G006901 Gossypium hirsutum
Gohir.A09G097500 Gossypium hirsutum
Gohir.A09G137100 Gossypium hirsutum
Gohir.A11G318100 Gossypium hirsutum
Gohir.D01G126900 Gossypium hirsutum
Gohir.D01G192900 Gossypium hirsutum
Gohir.D04G095700 Gossypium hirsutum
Gohir.D05G081700 Gossypium hirsutum
Gohir.D07G115300 Gossypium hirsutum
Gohir.D08G017033 Gossypium hirsutum
Gohir.D09G097200 Gossypium hirsutum
Gohir.D11G337300 Gossypium hirsutum
Gorai.001G123500 Gossypium raimondii
Gorai.002G157600 Gossypium raimondii
Gorai.002G236700 Gossypium raimondii
Gorai.004G011400 Gossypium raimondii
Gorai.006G113900 Gossypium raimondii
Gorai.006G151100 Gossypium raimondii
Gorai.007G367300 Gossypium raimondii
Gorai.009G083300 Gossypium raimondii
Gorai.009G398500 Gossypium raimondii
GSVIVG01033923001 Vitis vinifera
HanXRQChr01g0025551 Helianthus annuus
HanXRQChr02g0053821 Helianthus annuus
HanXRQChr05g0130531 Helianthus annuus
HanXRQChr13g0398121 Helianthus annuus
HanXRQChr15g0491651 Helianthus annuus
HanXRQChr15g0491661 Helianthus annuus
Haze_19672 Corylus avellana
Haze_23335 Corylus avellana
Hma1.2p1_0064F.1_g034920 Hydrangea macrophylla
Hma1.2p1_0245F.1_g101460 Hydrangea macrophylla
Hma1.2p1_1178F.1_g264380 Hydrangea macrophylla
HPP92_009785 Vanilla planifolia
HPP92_011910 Vanilla planifolia
HPP92_027467 Vanilla planifolia
Hund03868 Selenicereus undatus
Hund18788 Selenicereus undatus
Lalb_Chr01g0017921 Lupinus albus
Lalb_Chr02g0154691 Lupinus albus
Lalb_Chr19g0136321 Lupinus albus
Lalb_Chr20g0111511 Lupinus albus
Lalb_Chr21g0315971 Lupinus albus
Lalb_Chr25g0288121 Lupinus albus
Lj1E1035T0 Lonicera japonica
Lj1g0028219 Lotus japonicus
Lj3g0000291 Lotus japonicus
Lj3g0010138 Lotus japonicus
Lj5g0002622 Lotus japonicus
Lsat_1_v5_gn_1_57381 Lactuca sativa
Lsat_1_v5_gn_2_54800 Lactuca sativa
Lsat_1_v5_gn_6_35941 Lactuca sativa
Lsat_1_v5_gn_6_35961 Lactuca sativa
Manes.08G030700 Manihot esculenta
Manes.09G049500 Manihot esculenta
MBI01_g34424_MAGBIO Magnolia biondii
MBI17_g16778_MAGBIO Magnolia biondii
MD03G1151000 Malus domestica
MD11G1170900 Malus domestica
MD12G1033200 Malus domestica
MD14G1034000 Malus domestica
Medtr1g058120 Medicago truncatula
Medtr2g086850 Medicago truncatula
Medtr2g086860 Medicago truncatula
Medtr2g086870 Medicago truncatula
Medtr4g052190 Medicago truncatula
Medtr4g052230 Medicago truncatula
Medtr7g105730 Medicago truncatula
MELO3C009512.2 Cucumis melo
MELO3C014511.2 Cucumis melo
MELO3C019908.2 Cucumis melo
MELO3C024572.2 Cucumis melo
MELO3C035602.2 Cucumis melo
Migut.D02403 Erythranthe guttata
Migut.D02419 Erythranthe guttata
Migut.J00676 Erythranthe guttata
Migut.L01911 Erythranthe guttata
Migut.N02468 Erythranthe guttata
MSTRG.12379 Avicennia marina
MSTRG.18781 Avicennia marina
MSTRG.19292 Avicennia marina
MSTRG.21024 Avicennia marina
MSTRG.5878 Avicennia marina
Nitab4.5_0000380g0240 Nicotiana tabacum
Nitab4.5_0000840g0040 Nicotiana tabacum
Nitab4.5_0001135g0070 Nicotiana tabacum
Nitab4.5_0002706g0040 Nicotiana tabacum
Nitab4.5_0003516g0020 Nicotiana tabacum
Nitab4.5_0008945g0010 Nicotiana tabacum
Nitab4.5_0012062g0010 Nicotiana tabacum
Nitab4.5_0014697g0010 Nicotiana tabacum
Nn1g00473 Nelumbo nucifera
Nn1g07774 Nelumbo nucifera
Nn6g34732 Nelumbo nucifera
Nn6g34775 Nelumbo nucifera
Oeu008369.1 Olea europaea
Oeu009064.1 Olea europaea
Oeu009316.1 Olea europaea
Oeu010304.1 Olea europaea
Oeu010757.1 Olea europaea
Oeu017706.1 Olea europaea
Oeu038096.1 Olea europaea
Oeu043480.1 Olea europaea
Oeu048851.1 Olea europaea
Os01g0863500 Oryza sativa ssp. japonica
Os02g0536500 Oryza sativa ssp. japonica
Os04g0415000 Oryza sativa ssp. japonica
Os04g0684600 Oryza sativa ssp. japonica
Os05g0442000 Oryza sativa ssp. japonica
Os08g0102250 Oryza sativa ssp. japonica
Peaxi162Scf00224g00063 Petunia axillaris
Peaxi162Scf00419g00016 Petunia axillaris
Peaxi162Scf01662g00116 Petunia axillaris
PGR004G2379 Punica granatum
PGR102G1406 Punica granatum
PGR119G2238 Punica granatum
PGSC0003DMG400005933 Solanum tuberosum
PGSC0003DMG400016381 Solanum tuberosum
PGSC0003DMG400019617 Solanum tuberosum
PGSC0003DMG401028242 Solanum tuberosum
Phvul.001G098801 Phaseolus vulgaris
Phvul.001G098900 Phaseolus vulgaris
Phvul.001G193700 Phaseolus vulgaris
Phvul.003G204800 Phaseolus vulgaris
Phvul.005G121200 Phaseolus vulgaris
Phvul.005G121300 Phaseolus vulgaris
Phvul.005G121400 Phaseolus vulgaris
Phvul.005G121600 Phaseolus vulgaris
Phvul.007G270300 Phaseolus vulgaris
Phvul.011G097300 Phaseolus vulgaris
Potri.004G200300 Populus trichocarpa
Potri.006G206000 Populus trichocarpa
Potri.009G161400 Populus trichocarpa
Potri.010G241400 Populus trichocarpa
Potri.016G073400 Populus trichocarpa
Prupe.6G139000 Prunus persica
Prupe.7G099000 Prunus persica
Psat3g030520 Pisum sativum
Psat5g259520 Pisum sativum
Psat6g082040 Pisum sativum
Psat7g186760 Pisum sativum
PSO384G0135 Papaver somniferum
PSO801G0813 Papaver somniferum
QL01p011687 Quercus lobata
QL03p057079 Quercus lobata
QL04p047013 Quercus lobata
QL07p037582 Quercus lobata
RcHm_v2.0_Chr3g0475171 Rosa chinensis
Rhsim01G0202400 Rhododendron simsii
Rhsim03G0067600 Rhododendron simsii
Sabra04G0135500 Salix brachista
Sabra06G0158900 Salix brachista
Sabra09G0126100 Salix brachista
Sabra10G0188900 Salix brachista
Sabra16G0076200 Salix brachista
SalBow6G6350 Salvia bowleyana
Sc12g0004750 Simmondsia chinensis
Sc20g0006570 Simmondsia chinensis
Sc21g0006930 Simmondsia chinensis
Sed0005340 Sechium edule
Sed0007684 Sechium edule
Sed0009866 Sechium edule
Sed0010563 Sechium edule
Sed0015032 Sechium edule
Sed0016026 Sechium edule
Sed0016591 Sechium edule
Sed0022322 Sechium edule
SGA_v2.0_scaffold13G06675 Striga asiatica
SGA_v2.0_scaffold184G39999 Striga asiatica
SGA_v2.0_scaffold295G47499 Striga asiatica
SGA_v2.0_scaffold7G03988 Striga asiatica
SHI27881 Sapria himalayana
Solyc01g007870.3 Solanum lycopersicum
Solyc06g073990.2 Solanum lycopersicum
Solyc10g083140.1 Solanum lycopersicum
Sopen06g030400 Solanum pennellii
Sopen10g032610 Solanum pennellii
Sopen11g027480 Solanum pennellii
Sp3g09840 Schrenkiella parvula
Sp6g22970 Schrenkiella parvula
Sp6g36590 Schrenkiella parvula
TAR623G1308 Trochodendron aralioides
TAR633G2309 Trochodendron aralioides
TAR636G2183 Trochodendron aralioides
THA.LOC104816609 Tarenaya hassleriana
THA.LOC104824456 Tarenaya hassleriana
THA.LOC104826812 Tarenaya hassleriana
THA.LOC109116036 Tarenaya hassleriana
THA.LOC109116579 Tarenaya hassleriana
Thecc.05G099800 Theobroma cacao
Thecc.09G277000 Theobroma cacao
Thhalv10015029m.g Eutrema salsugineum
Thhalv10021790m.g Eutrema salsugineum
TPR.G24419 Trifolium pratense
TPR.G30276 Trifolium pratense
TPR.G4507 Trifolium pratense
TPR.G4520 Trifolium pratense
TPR.G8730 Trifolium pratense
TWI31G0336 Tripterygium wilfordii
TWI31G0736 Tripterygium wilfordii
TWI74G1322 Tripterygium wilfordii
TWI79G0041 Tripterygium wilfordii
unitig_22.g5670 Utricularia gibba
unitig_27.g25121 Utricularia gibba
unitig_699.g19452 Utricularia gibba
unitig_8.g4297 Utricularia gibba
VMungo0720G0358 Vigna mungo
VMungo1080G0822 Vigna mungo
VMungo1080G0829 Vigna mungo
VMungo1127G1297 Vigna mungo
VMungo1383G0716 Vigna mungo
VMungo1383G3068 Vigna mungo
Zm00001eb065690 Zea mays
Zm00001eb083650 Zea mays
Zm00001eb146970 Zea mays
Zm00001eb242930 Zea mays
Zm00001eb288880 Zea mays
Zm00001eb348470 Zea mays
Zm00001eb422000 Zea mays

User provided reference genes

Program Settings