Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p10280 Brassica napus
A03p14640 Brassica napus
A06p07990 Brassica napus
Aa31LG1G3340 Aethionema arabicum
Aa31LG3G10390 Aethionema arabicum
Aa31LG5G10180 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.429 Anthoceros agrestis
Actinidia05153 Actinidia chinensis
Ah.06g183400 Amaranthus hybridus
AL1G22450 Arabidopsis lyrata
AL7G25490 Arabidopsis lyrata
AL8G29800 Arabidopsis lyrata
Aqoxy3G01669 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1Z6SIG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.58WU6G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9P3M8J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9Z8ZG1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BEP26V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KY4AMT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M8XKK1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q56DWI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TU7XRI Arachis hypogaea
AT1G11360 Arabidopsis thaliana
AT4G27320 Arabidopsis thaliana
AT5G54430 Arabidopsis thaliana
ATR1132G057 Amborella trichopoda
Atru.chr10.2038 Acer truncatum
Atru.chr2.2944 Acer truncatum
Atru.chr6.3095 Acer truncatum
AUR62025147 Chenopodium quinoa
AUR62029290 Chenopodium quinoa
AUR62041164 Chenopodium quinoa
BcaB03g12532 Brassica carinata
BcaB05g22134 Brassica carinata
BcaC01g06307 Brassica carinata
BcaC03g14312 Brassica carinata
BcaC05g25011 Brassica carinata
BcaC07g38279 Brassica carinata
BcaC09g50585 Brassica carinata
BcaNung03041 Brassica carinata
BcaNung03043 Brassica carinata
BolC1t02291H Brassica oleracea
BolC5t29701H Brassica oleracea
BraA01t01799Z Brassica rapa
BraA03t10755Z Brassica rapa
BraA06t23998Z Brassica rapa
C02p17020 Brassica napus
C03p17130 Brassica napus
C05p09590 Brassica napus
CAN.G1110.36 Capsicum annuum
CAN.G1110.37 Capsicum annuum
CAN.G1110.38 Capsicum annuum
CAN.G162.114 Capsicum annuum
CAN.G289.23 Capsicum annuum
CAN.G289.24 Capsicum annuum
CAN.G424.39 Capsicum annuum
CAN.G640.26 Capsicum annuum
CANSAT56G4439 Cannabis sativa
CANSAT64G2853 Cannabis sativa
CARHR011600 Cardamine hirsuta
CARHR234970 Cardamine hirsuta
CARHR267720 Cardamine hirsuta
Carub.0001s1098 Capsella rubella
Carub.0007s1356 Capsella rubella
Carub.0008s1475 Capsella rubella
Ca_01554_v3 Cicer arietinum L.
Ca_22915_v3 Cicer arietinum L.
CBR_g17960 Chara braunii
CBR_g23655 Chara braunii
CBR_g50749 Chara braunii
Cc02_g12180 Coffea canephora
Cc05_g05700 Coffea canephora
Cc05_g12820 Coffea canephora
CDE01G0677 Ceratophyllum demersum
CDE05G0495 Ceratophyllum demersum
Cfa000312 Carpinus fangiana
Ciclev10009334m.g Citrus clementina
Ciclev10016399m.g Citrus clementina
Ciclev10016651m.g Citrus clementina
CiPaw.03G166800 Carya illinoinensis
CiPaw.07G209200 Carya illinoinensis
CiPaw.09G156300 Carya illinoinensis
CiPaw.10G115600 Carya illinoinensis
CiPaw.11G179000 Carya illinoinensis
CiPaw.12G123700 Carya illinoinensis
ClCG02G001490 Citrullus lanatus
ClCG05G015140 Citrullus lanatus
ClCG11G018610 Citrullus lanatus
COL.COLO4_09502 Corchorus olitorius
COL.COLO4_13059 Corchorus olitorius
COL.COLO4_13061 Corchorus olitorius
COL.COLO4_31637 Corchorus olitorius
Cpa.g.sc12.13 Carica papaya
Cpa.g.sc34.56 Carica papaya
Cpa.g.sc871.5 Carica papaya
Cre12.g542350 Chlamydomonas reinhardtii
Cre13.g565250 Chlamydomonas reinhardtii
CsaV3_3G044230 Cucumis sativus L.
CsaV3_3G044250 Cucumis sativus L.
CsaV3_7G000250 Cucumis sativus L.
CsaV3_7G003990 Cucumis sativus L.
CSS0005987 Camellia sinensis var. sinensis
CSS0014365 Camellia sinensis var. sinensis
CSS0014755 Camellia sinensis var. sinensis
CSS0018325 Camellia sinensis var. sinensis
CSS0025245 Camellia sinensis var. sinensis
CSS0043618 Camellia sinensis var. sinensis
DCAR_008097 Daucus carota
DCAR_008690 Daucus carota
DCAR_021207 Daucus carota
DCAR_022493 Daucus carota
Dinv08362 Davidia involucrata
Dinv18976 Davidia involucrata
Dinv22348 Davidia involucrata
Dinv39817 Davidia involucrata
Duzib132G0774 Durio zibethinus
Duzib160G0731 Durio zibethinus
Duzib170G0441 Durio zibethinus
Duzib213G0219 Durio zibethinus
Duzib248G0676 Durio zibethinus
ECA233G1767 Erigeron canadensis
ECA236G2940 Erigeron canadensis
ECA236G3672 Erigeron canadensis
EL10Ac4g08038 Beta vulgaris
Eucgr.E03674 Eucalyptus grandis
FAN01G0527 Fragaria x ananassa
FAN02G1109 Fragaria x ananassa
FAN05G2668 Fragaria x ananassa
FAN05G4034 Fragaria x ananassa
FAN05G4410 Fragaria x ananassa
FAN05G5763 Fragaria x ananassa
FAN07G1544 Fragaria x ananassa
FAN09G0792 Fragaria x ananassa
FAN09G4257 Fragaria x ananassa
FAN11G1549 Fragaria x ananassa
FAN11G2803 Fragaria x ananassa
FAN11G3656 Fragaria x ananassa
FAN14G4221 Fragaria x ananassa
FAN14G5763 Fragaria x ananassa
FAN15G1422 Fragaria x ananassa
FAN16G0320 Fragaria x ananassa
FAN16G2302 Fragaria x ananassa
FAN16G3255 Fragaria x ananassa
FAN20G0741 Fragaria x ananassa
FAN21G1647 Fragaria x ananassa
FAN21G3964 Fragaria x ananassa
FAN25G1831 Fragaria x ananassa
FvH4_3g03650 Fragaria vesca
FvH4_3g12631 Fragaria vesca
FvH4_3g21220 Fragaria vesca
FvH4_4g08721 Fragaria vesca
FvH4_5g34312 Fragaria vesca
FvH4_6g44300 Fragaria vesca
Glyma.06G255200 Glycine max
Glyma.12G146100 Glycine max
Glyma.12G198500 Glycine max
Glyma.13G303600 Glycine max
Glyma.17G248100 Glycine max
Gohir.A01G070000 Gossypium hirsutum
Gohir.A03G161600 Gossypium hirsutum
Gohir.A04G025000 Gossypium hirsutum
Gohir.A11G284000 Gossypium hirsutum
Gohir.A12G135700 Gossypium hirsutum
Gohir.A13G057900 Gossypium hirsutum
Gohir.A13G059050 Gossypium hirsutum
Gohir.A13G143100 Gossypium hirsutum
Gohir.D01G057200 Gossypium hirsutum
Gohir.D02G184900 Gossypium hirsutum
Gohir.D05G362400 Gossypium hirsutum
Gohir.D11G294800 Gossypium hirsutum
Gohir.D12G139700 Gossypium hirsutum
Gohir.D13G063050 Gossypium hirsutum
Gohir.D13G064100 Gossypium hirsutum
Gohir.D13G064200 Gossypium hirsutum
Gohir.D13G147800 Gossypium hirsutum
Gorai.002G077600 Gossypium raimondii
Gorai.005G207200 Gossypium raimondii
Gorai.007G318200 Gossypium raimondii
Gorai.008G150800 Gossypium raimondii
Gorai.009G430200 Gossypium raimondii
Gorai.013G071500 Gossypium raimondii
Gorai.013G072800 Gossypium raimondii
Gorai.013G165600 Gossypium raimondii
GSVIVG01000443001 Vitis vinifera
GSVIVG01003679001 Vitis vinifera
HanXRQChr11g0331981 Helianthus annuus
HanXRQChr15g0482641 Helianthus annuus
HanXRQChr15g0494531 Helianthus annuus
HanXRQChr17g0555591 Helianthus annuus
Hma1.2p1_0024F.1_g015970 Hydrangea macrophylla
Hma1.2p1_1147F.1_g261490 Hydrangea macrophylla
Hma1.2p1_1258F.1_g270910 Hydrangea macrophylla
HPP92_000913 Vanilla planifolia
HPP92_001794 Vanilla planifolia
HPP92_014087 Vanilla planifolia
Hund02177 Selenicereus undatus
Hund23368 Selenicereus undatus
Lalb_Chr01g0006351 Lupinus albus
Lalb_Chr03g0030351 Lupinus albus
Lalb_Chr14g0366511 Lupinus albus
Lalb_Chr19g0134561 Lupinus albus
Lj3g0003033 Lotus japonicus
Lj3g0023429 Lotus japonicus
Lj8C119T3 Lonicera japonica
Lsat_1_v5_gn_4_69701 Lactuca sativa
Lsat_1_v5_gn_7_105841 Lactuca sativa
Lsat_1_v5_gn_7_20241 Lactuca sativa
Lsat_1_v5_gn_8_131180 Lactuca sativa
Manes.12G086000 Manihot esculenta
Manes.13G087725 Manihot esculenta
Manes.15G081300 Manihot esculenta
Manes.16G019170 Manihot esculenta
Manes.17G032700 Manihot esculenta
Mapoly0005s0031 Marchantia polymorpha
Mapoly0113s0044 Marchantia polymorpha
MBI02_g43402_MAGBIO Magnolia biondii
MBI02_g47733_MAGBIO Magnolia biondii
MBI18_g07914_MAGBIO Magnolia biondii
MCO04G395 Micromonas commoda
MCO10G370 Micromonas commoda
MCO11G574 Micromonas commoda
MD03G1194200 Malus domestica
MD03G1216700 Malus domestica
MD05G1329100 Malus domestica
MD09G1099000 Malus domestica
MD10G1306000 Malus domestica
MD11G1234300 Malus domestica
MD17G1087300 Malus domestica
Medtr1527s0010 Medicago truncatula
Medtr1717s0010 Medicago truncatula
Medtr2g081250 Medicago truncatula
Medtr2g089350 Medicago truncatula
MELO3C013432.2 Cucumis melo
MELO3C018175.2 Cucumis melo
MELO3C018178.2 Cucumis melo
MELO3C018780.2 Cucumis melo
Migut.M00370 Erythranthe guttata
Migut.M01230 Erythranthe guttata
Migut.M01850 Erythranthe guttata
MSTRG.13170 Avicennia marina
MSTRG.14665 Avicennia marina
MSTRG.15189 Avicennia marina
MSTRG.15945 Avicennia marina
MSTRG.6858 Avicennia marina
MSTRG.7275 Avicennia marina
Nitab4.5_0000207g0270 Nicotiana tabacum
Nitab4.5_0000297g0220 Nicotiana tabacum
Nitab4.5_0000649g0220 Nicotiana tabacum
Nitab4.5_0001252g0060 Nicotiana tabacum
Nitab4.5_0001320g0030 Nicotiana tabacum
Nitab4.5_0005620g0010 Nicotiana tabacum
Nitab4.5_0006653g0020 Nicotiana tabacum
Nitab4.5_0008821g0010 Nicotiana tabacum
Nn1g03816 Nelumbo nucifera
Nn1g06836 Nelumbo nucifera
Nn3g20726 Nelumbo nucifera
Nn4g24178 Nelumbo nucifera
Nn7g37945 Nelumbo nucifera
Oeu006772.1 Olea europaea
Oeu016138.1 Olea europaea
Oeu019381.1 Olea europaea
Oeu030046.1 Olea europaea
Oeu050813.1 Olea europaea
Oeu055692.1 Olea europaea
Os01g0783500 Oryza sativa ssp. japonica
Os05g0501700 Oryza sativa ssp. japonica
Os07g0551400 Oryza sativa ssp. japonica
Peaxi162Scf00257g00104 Petunia axillaris
Peaxi162Scf01035g00220 Petunia axillaris
Peaxi162Scf01216g00030 Petunia axillaris
PGR031G0277 Punica granatum
PGR042G3065 Punica granatum
PGR083G1461 Punica granatum
PGR142G1688 Punica granatum
PGSC0003DMG400005042 Solanum tuberosum
PGSC0003DMG400019279 Solanum tuberosum
PGSC0003DMG400022396 Solanum tuberosum
PGSC0003DMG400025025 Solanum tuberosum
PGSC0003DMG400026148 Solanum tuberosum
Phvul.005G110500 Phaseolus vulgaris
Phvul.011G149900 Phaseolus vulgaris
Potri.001G409100 Populus trichocarpa
Potri.011G039800 Populus trichocarpa
Potri.011G125500 Populus trichocarpa
Potri.013G150200 Populus trichocarpa
Potri.019G119400 Populus trichocarpa
Pp3c14_21075 Physcomitrium patens
Pp3c17_15590 Physcomitrium patens
Pp3c1_30080 Physcomitrium patens
Pp3c2_6440 Physcomitrium patens
Pp3c6_3210 Physcomitrium patens
PRCOL_00004993 Prasinoderma coloniale
Prupe.3G227200 Prunus persica
Prupe.3G227400 Prunus persica
Prupe.4G033700 Prunus persica
Prupe.4G192600 Prunus persica
Psat4g136400 Pisum sativum
Psat5g247640 Pisum sativum
Psat5g266840 Pisum sativum
PSO210G6907 Papaver somniferum
PSO541G1158 Papaver somniferum
PSO675G8145 Papaver somniferum
PSO832G0282 Papaver somniferum
QL03p007872 Quercus lobata
QL05p060933 Quercus lobata
QL05p080492 Quercus lobata
QL08p017122 Quercus lobata
QL08p036042 Quercus lobata
RcHm_v2.0_Chr2g0161161 Rosa chinensis
RcHm_v2.0_Chr5g0005691 Rosa chinensis
RcHm_v2.0_Chr5g0036291 Rosa chinensis
Rhsim04G0058900 Rhododendron simsii
Rhsim06G0191800 Rhododendron simsii
Rhsim13G0167700 Rhododendron simsii
RhsimUnG0173100 Rhododendron simsii
RhsimUnG0197600 Rhododendron simsii
RhsimUnG0256800 Rhododendron simsii
Sabra11G0027400 Salix brachista
Sabra11G0112100 Salix brachista
Sabra16G0272000 Salix brachista
Sabra16G0277000 Salix brachista
Sabra19G0120200 Salix brachista
Sabra19G0133800 Salix brachista
SalBow7G3002 Salvia bowleyana
SalBow7G4125 Salvia bowleyana
SalBow8G1705 Salvia bowleyana
Sc03g0009510 Simmondsia chinensis
Sc05g0008210 Simmondsia chinensis
Sc21g0002130 Simmondsia chinensis
Sed0018110 Sechium edule
Sed0023163 Sechium edule
Sed0024165 Sechium edule
SEGI_35633 Sequoiadendron giganteum
SGA_v2.0_scaffold114G31994 Striga asiatica
SGA_v2.0_scaffold199G41191 Striga asiatica
SGA_v2.0_scaffold34G13706 Striga asiatica
SGA_v2.0_scaffold73G24329 Striga asiatica
SGA_v2.0_scaffold7G03906 Striga asiatica
SGA_v2.0_scaffold98G29334 Striga asiatica
SHI31897 Sapria himalayana
SMO200G0081 Selaginella moellendorffii
SMO203G0157 Selaginella moellendorffii
Solyc02g079410.2 Solanum lycopersicum
Solyc03g006680.3 Solanum lycopersicum
Solyc07g053200.4 Solanum lycopersicum
Solyc10g006760.3 Solanum lycopersicum
Sopen00g010270 Solanum pennellii
Sopen02g024210 Solanum pennellii
Sopen03g002690 Solanum pennellii
Sopen07g026760 Solanum pennellii
Sopen07g031860 Solanum pennellii
Sopen10g002680 Solanum pennellii
Sp1g10000 Schrenkiella parvula
Sp6g16430 Schrenkiella parvula
Sp7g25240 Schrenkiella parvula
TAR626G0964 Trochodendron aralioides
TAR627G0160 Trochodendron aralioides
TAR627G0204 Trochodendron aralioides
THA.LOC104809279 Tarenaya hassleriana
THA.LOC104809542 Tarenaya hassleriana
THA.LOC104818978 Tarenaya hassleriana
Thecc.02G167200 Theobroma cacao
Thecc.06G202600 Theobroma cacao
Thecc.07G068600 Theobroma cacao
Thhalv10008352m.g Eutrema salsugineum
Thhalv10014526m.g Eutrema salsugineum
Thhalv10026025m.g Eutrema salsugineum
TPR.G1064 Trifolium pratense
TPR.G18058 Trifolium pratense
TWI36G0810 Tripterygium wilfordii
TWI38G0027 Tripterygium wilfordii
TWI38G1134 Tripterygium wilfordii
TWI38G1518 Tripterygium wilfordii
TWI39G0790 Tripterygium wilfordii
unitig_0.g738 Utricularia gibba
vmacro09307 Vaccinium macrocarpon
vmacro09575 Vaccinium macrocarpon
vmacro11805 Vaccinium macrocarpon
VMungo1080G0984 Vigna mungo
VMungo1127G0261 Vigna mungo
Zm00001eb013170 Zea mays
Zm00001eb106650 Zea mays
Zm00001eb151380 Zea mays
Zm00001eb215250 Zea mays
Zm00001eb221730 Zea mays
Zm00001eb271630 Zea mays
Zm00001eb291980 Zea mays
Zm00001eb323700 Zea mays
Zm00001eb369780 Zea mays

User provided reference genes

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