Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p32840 Brassica napus
A03p42730 Brassica napus
A05p24980 Brassica napus
A05p26440 Brassica napus
A09p08570 Brassica napus
Aa31LG1G17690 Aethionema arabicum
Aa31LG2G13660 Aethionema arabicum
Aa31LG8G8900 Aethionema arabicum
Actinidia00270 Actinidia chinensis
Actinidia14737 Actinidia chinensis
Actinidia18165 Actinidia chinensis
Actinidia23997 Actinidia chinensis
Actinidia28056 Actinidia chinensis
Actinidia32781 Actinidia chinensis
Ah.01g022350 Amaranthus hybridus
Ah.07g201410 Amaranthus hybridus
AL1G46540 Arabidopsis lyrata
AL372U10020 Arabidopsis lyrata
AL3G36640 Arabidopsis lyrata
AL3G36650 Arabidopsis lyrata
AL5G17040 Arabidopsis lyrata
AL8G41480 Arabidopsis lyrata
Aqoxy132s001 Aquilegia oxysepala
Aqoxy3G02029 Aquilegia oxysepala
Aqoxy4G00776 Aquilegia oxysepala
Aqoxy5G01905 Aquilegia oxysepala
Aqoxy5G03141 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.21N9MM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6YT2J6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7K2YJD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BF7YHD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E2AJGQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J9518S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KN5WZ8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R33HCR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TXC3C1 Arachis hypogaea
AT1G32350 Arabidopsis thaliana
AT3G22360 Arabidopsis thaliana
AT3G22370 Arabidopsis thaliana
AT3G27620 Arabidopsis thaliana
AT5G64210 Arabidopsis thaliana
ATR0782G153 Amborella trichopoda
ATR0829G151 Amborella trichopoda
Atru.chr1.910 Acer truncatum
Atru.chr6.1138 Acer truncatum
Atru.chr6.2100 Acer truncatum
Atru.chr6.2103 Acer truncatum
Atru.chr6.2104 Acer truncatum
AUR62007420 Chenopodium quinoa
AUR62010135 Chenopodium quinoa
AUR62013127 Chenopodium quinoa
AUR62027312 Chenopodium quinoa
AUR62029604 Chenopodium quinoa
AUR62038652 Chenopodium quinoa
BcaB03g13743 Brassica carinata
BcaB04g19198 Brassica carinata
BcaB04g20524 Brassica carinata
BcaB06g26337 Brassica carinata
BcaC01g03448 Brassica carinata
BcaC05g27876 Brassica carinata
BcaC05g28080 Brassica carinata
BcaC09g49167 Brassica carinata
BolC1t04149H Brassica oleracea
BolC3t17517H Brassica oleracea
BolC5t32621H Brassica oleracea
BolC5t32845H Brassica oleracea
BolC9t53880H Brassica oleracea
BraA01t03407Z Brassica rapa
BraA03t13420Z Brassica rapa
BraA05t21380Z Brassica rapa
BraA05t21517Z Brassica rapa
BraA09t36506Z Brassica rapa
C01p41930 Brassica napus
C03p52460 Brassica napus
C05p38810 Brassica napus
C05p41020 Brassica napus
C09p09690 Brassica napus
CAN.G1.67 Capsicum annuum
CAN.G107.18 Capsicum annuum
CAN.G108.46 Capsicum annuum
CAN.G165.14 Capsicum annuum
CAN.G1731.2 Capsicum annuum
CAN.G1731.3 Capsicum annuum
CAN.G1868.3 Capsicum annuum
CAN.G235.7 Capsicum annuum
CAN.G2441.2 Capsicum annuum
CAN.G27.29 Capsicum annuum
CAN.G320.18 Capsicum annuum
CAN.G406.7 Capsicum annuum
CAN.G510.1 Capsicum annuum
CAN.G523.68 Capsicum annuum
CAN.G551.56 Capsicum annuum
CAN.G551.59 Capsicum annuum
CAN.G609.15 Capsicum annuum
CAN.G630.71 Capsicum annuum
CAN.G6863.1 Capsicum annuum
CAN.G69.19 Capsicum annuum
CAN.G792.62 Capsicum annuum
CANSAT11G2112 Cannabis sativa
CANSAT21G0608 Cannabis sativa
CARHR031720 Cardamine hirsuta
CARHR098260 Cardamine hirsuta
CARHR252850 Cardamine hirsuta
CARHR278120 Cardamine hirsuta
CARHR278130 Cardamine hirsuta
Carub.0001s3072 Capsella rubella
Carub.0003s2252 Capsella rubella
Carub.0003s2253 Capsella rubella
Carub.0005s0606 Capsella rubella
Carub.0008s2500 Capsella rubella
Ca_18354_v3 Cicer arietinum L.
Ca_18395_v3 Cicer arietinum L.
Ca_25086_v3 Cicer arietinum L.
CBR_g24160 Chara braunii
CBR_g24162 Chara braunii
CBR_g40095 Chara braunii
Cc02_g21530 Coffea canephora
Cc08_g05330 Coffea canephora
Cc08_g05380 Coffea canephora
CDE02G1669 Ceratophyllum demersum
CDE02G2950 Ceratophyllum demersum
CDE04G3729 Ceratophyllum demersum
CDE11G0016 Ceratophyllum demersum
CDE12G0388 Ceratophyllum demersum
Cfa005596 Carpinus fangiana
Cfa020088 Carpinus fangiana
Ciclev10001766m.g Citrus clementina
Ciclev10003687m.g Citrus clementina
Ciclev10028835m.g Citrus clementina
CiPaw.05G035300 Carya illinoinensis
CiPaw.12G073000 Carya illinoinensis
ClCG10G009260 Citrullus lanatus
COL.COLO4_06967 Corchorus olitorius
COL.COLO4_24938 Corchorus olitorius
Cpa.g.sc42.47 Carica papaya
Cpa.g.sc8.29 Carica papaya
Cre03.g169550 Chlamydomonas reinhardtii
Cre09.g395950 Chlamydomonas reinhardtii
CsaV3_4G009450 Cucumis sativus L.
CSS0005051 Camellia sinensis var. sinensis
CSS0005986 Camellia sinensis var. sinensis
CSS0030122 Camellia sinensis var. sinensis
CSS0046548 Camellia sinensis var. sinensis
CSS0049009 Camellia sinensis var. sinensis
CSS0049680 Camellia sinensis var. sinensis
DCAR_021858 Daucus carota
DCAR_021859 Daucus carota
DCAR_028361 Daucus carota
DCAR_029210 Daucus carota
Dinv09031 Davidia involucrata
Dinv24190 Davidia involucrata
Dinv41813 Davidia involucrata
Dinv41814 Davidia involucrata
Duzib052G0577 Durio zibethinus
Duzib132G1029 Durio zibethinus
Duzib205G1950 Durio zibethinus
ECA234G3786 Erigeron canadensis
ECA240G0626 Erigeron canadensis
ECA240G3544 Erigeron canadensis
ECA246G0128 Erigeron canadensis
EL10Ac5g11908 Beta vulgaris
EL10Ac8g19288 Beta vulgaris
EL10Ac9g21478 Beta vulgaris
EL10Ac9g22572 Beta vulgaris
Eucgr.E01210 Eucalyptus grandis
Eucgr.E01213 Eucalyptus grandis
Eucgr.E01214 Eucalyptus grandis
Eucgr.I02663 Eucalyptus grandis
FAN07G0088 Fragaria x ananassa
FAN07G0217 Fragaria x ananassa
FAN12G0150 Fragaria x ananassa
FAN13G0295 Fragaria x ananassa
FAN17G1053 Fragaria x ananassa
FAN17G3134 Fragaria x ananassa
FAN18G0317 Fragaria x ananassa
FAN22G1894 Fragaria x ananassa
FvH4_4g05920 Fragaria vesca
FvH4_4g05930 Fragaria vesca
FvH4_5g24160 Fragaria vesca
Glyma.04G123800 Glycine max
Glyma.05G117167 Glycine max
Glyma.05G117233 Glycine max
Glyma.08G072200 Glycine max
Glyma.08G072300 Glycine max
Gohir.A03G174000 Gossypium hirsutum
Gohir.A03G174100 Gossypium hirsutum
Gohir.A04G113700 Gossypium hirsutum
Gohir.A12G275400 Gossypium hirsutum
Gohir.D02G197200 Gossypium hirsutum
Gohir.D02G197300 Gossypium hirsutum
Gohir.D04G155000 Gossypium hirsutum
Gohir.D12G276100 Gossypium hirsutum
Gorai.005G220400 Gossypium raimondii
Gorai.005G220500 Gossypium raimondii
Gorai.008G296600 Gossypium raimondii
Gorai.012G142200 Gossypium raimondii
GSVIVG01022812001 Vitis vinifera
GSVIVG01022814001 Vitis vinifera
GSVIVG01038745001 Vitis vinifera
HanXRQChr03g0081111 Helianthus annuus
HanXRQChr03g0081321 Helianthus annuus
HanXRQChr13g0411111 Helianthus annuus
HanXRQChr13g0411131 Helianthus annuus
HanXRQChr16g0514271 Helianthus annuus
Haze_10715 Corylus avellana
Haze_20103 Corylus avellana
Hma1.2p1_0199F.1_g085590 Hydrangea macrophylla
Hma1.2p1_0199F.1_g085600 Hydrangea macrophylla
Hma1.2p1_0704F.1_g206640 Hydrangea macrophylla
HPP92_003432 Vanilla planifolia
HPP92_003433 Vanilla planifolia
HPP92_015126 Vanilla planifolia
Hund06382 Selenicereus undatus
Hund11092 Selenicereus undatus
Lalb_Chr09g0325201 Lupinus albus
Lalb_Chr16g0380661 Lupinus albus
Lalb_Chr16g0382731 Lupinus albus
Lj2g0011815 Lotus japonicus
Lj2g0025514 Lotus japonicus
Lj4g0002004 Lotus japonicus
Lj5A239T83 Lonicera japonica
Lj7A163T40 Lonicera japonica
Lj7A163T42 Lonicera japonica
Lsat_1_v5_gn_5_107861 Lactuca sativa
Lsat_1_v5_gn_5_55281 Lactuca sativa
Lsat_1_v5_gn_5_55580 Lactuca sativa
Manes.06G008750 Manihot esculenta
Manes.06G012700 Manihot esculenta
Mapoly0009s0095 Marchantia polymorpha
Mapoly0016s0007 Marchantia polymorpha
MD00G1148200 Malus domestica
MD13G1231500 Malus domestica
MD16G1236400 Malus domestica
Medtr4g094222 Medicago truncatula
Medtr5g026620 Medicago truncatula
Medtr5g070680 Medicago truncatula
Medtr5g070870 Medicago truncatula
MELO3C027020.2 Cucumis melo
Migut.E01358 Erythranthe guttata
Migut.J01127 Erythranthe guttata
Migut.N01067 Erythranthe guttata
MSTRG.11876 Avicennia marina
MSTRG.1764 Avicennia marina
MSTRG.25737 Avicennia marina
MSTRG.27798 Avicennia marina
Nitab4.5_0000030g0350 Nicotiana tabacum
Nitab4.5_0000985g0020 Nicotiana tabacum
Nitab4.5_0001175g0120 Nicotiana tabacum
Nitab4.5_0002533g0030 Nicotiana tabacum
Nitab4.5_0012779g0010 Nicotiana tabacum
Nitab4.5_0013698g0010 Nicotiana tabacum
Nn1g01525 Nelumbo nucifera
Nn1g02044 Nelumbo nucifera
Nn3g19258 Nelumbo nucifera
Nn3g19259 Nelumbo nucifera
Nn3g19263 Nelumbo nucifera
Nn5g30113 Nelumbo nucifera
Oeu015530.1 Olea europaea
Oeu019227.1 Olea europaea
Oeu019995.2 Olea europaea
Oeu046792.1 Olea europaea
Oeu046793.1 Olea europaea
Os02g0318100 Oryza sativa ssp. japonica
Os02g0700400 Oryza sativa ssp. japonica
Os04g0600200 Oryza sativa ssp. japonica
Os04g0600300 Oryza sativa ssp. japonica
Peaxi162Scf00001g00123 Petunia axillaris
Peaxi162Scf00045g00628 Petunia axillaris
Peaxi162Scf00053g00524 Petunia axillaris
Peaxi162Scf00053g00528 Petunia axillaris
PGR042G0799 Punica granatum
PGR042G1201 Punica granatum
PGR042G1322 Punica granatum
PGR042G1445 Punica granatum
PGR142G2909 Punica granatum
PGSC0003DMG400007613 Solanum tuberosum
PGSC0003DMG400007614 Solanum tuberosum
PGSC0003DMG400012558 Solanum tuberosum
PGSC0003DMG400018484 Solanum tuberosum
Phvul.002G127100 Phaseolus vulgaris
Phvul.002G209100 Phaseolus vulgaris
Phvul.002G209200 Phaseolus vulgaris
Potri.003G103900 Populus trichocarpa
Potri.012G001500 Populus trichocarpa
Potri.012G001600 Populus trichocarpa
Potri.015G019800 Populus trichocarpa
Pp3c2_12680 Physcomitrium patens
PRCOL_00001655 Prasinoderma coloniale
Prupe.1G061400 Prunus persica
Prupe.1G061800 Prunus persica
Prupe.1G061900 Prunus persica
Prupe.5G018700 Prunus persica
Psat2g058520 Pisum sativum
Psat2g142680 Pisum sativum
Psat7g098200 Pisum sativum
PSO151G0010 Papaver somniferum
PSO447G0350 Papaver somniferum
PSO541G3318 Papaver somniferum
PSO675G9318 Papaver somniferum
QL11p021186 Quercus lobata
QL11p021203 Quercus lobata
QL12p002179 Quercus lobata
RcHm_v2.0_Chr4g0397091 Rosa chinensis
RcHm_v2.0_Chr4g0397111 Rosa chinensis
RcHm_v2.0_Chr7g0213861 Rosa chinensis
RcHm_v2.0_Chr7g0213871 Rosa chinensis
RcHm_v2.0_Chr7g0213931 Rosa chinensis
Rhsim05G0106800 Rhododendron simsii
Rhsim07G0139700 Rhododendron simsii
Rhsim11G0034600 Rhododendron simsii
Rhsim11G0136800 Rhododendron simsii
Sabra03G0071000 Salix brachista
Sabra12G0019800 Salix brachista
SalBow1G7028 Salvia bowleyana
SalBow6G2656 Salvia bowleyana
SalBow6G6934 Salvia bowleyana
SalBow6G6983 Salvia bowleyana
SalBow8G2257 Salvia bowleyana
Sc01g0007100 Simmondsia chinensis
Sc18g0006900 Simmondsia chinensis
Sed0003932 Sechium edule
Sed0020415 Sechium edule
SEGI_01345 Sequoiadendron giganteum
SEGI_01813 Sequoiadendron giganteum
SEGI_06436 Sequoiadendron giganteum
SEGI_15438 Sequoiadendron giganteum
SEGI_32056 Sequoiadendron giganteum
SEGI_33940 Sequoiadendron giganteum
SEGI_34865 Sequoiadendron giganteum
SEGI_40252 Sequoiadendron giganteum
SEGI_40583 Sequoiadendron giganteum
SGA_v2.0_scaffold111G31355 Striga asiatica
SGA_v2.0_scaffold145G36037 Striga asiatica
SGA_v2.0_scaffold166G38330 Striga asiatica
SGA_v2.0_scaffold45G17313 Striga asiatica
SGA_v2.0_scaffold62G21550 Striga asiatica
SMO147G0428 Selaginella moellendorffii
SMO172G0184 Selaginella moellendorffii
SMO239G0068 Selaginella moellendorffii
SMO273G0050 Selaginella moellendorffii
SMO358G0011 Selaginella moellendorffii
Solyc01g105220.3 Solanum lycopersicum
Solyc08g005550.4 Solanum lycopersicum
Solyc08g075550.4 Solanum lycopersicum
Sopen01g047730 Solanum pennellii
Sopen08g001570 Solanum pennellii
Sopen08g024200 Solanum pennellii
Sopen08g024210 Solanum pennellii
Sp1g28550 Schrenkiella parvula
Sp2g27270 Schrenkiella parvula
Sp3g20130 Schrenkiella parvula
Sp3g20140 Schrenkiella parvula
TAR374G0253 Trochodendron aralioides
TAR375G0635 Trochodendron aralioides
TAR381G0727 Trochodendron aralioides
THA.LOC104809077 Tarenaya hassleriana
THA.LOC104814432 Tarenaya hassleriana
THA.LOC104819331 Tarenaya hassleriana
THA.LOC104822275 Tarenaya hassleriana
Thecc.02G138600 Theobroma cacao
Thecc.03G324800 Theobroma cacao
Thhalv10005697m.g Eutrema salsugineum
Thhalv10009342m.g Eutrema salsugineum
Thhalv10021013m.g Eutrema salsugineum
Thhalv10021719m.g Eutrema salsugineum
Thhalv10022022m.g Eutrema salsugineum
TPR.G10464 Trifolium pratense
TPR.G17273 Trifolium pratense
TPR.G18259 Trifolium pratense
TPR.G23014 Trifolium pratense
TWI23G1163 Tripterygium wilfordii
TWI53G1279 Tripterygium wilfordii
TWI59G1131 Tripterygium wilfordii
TWI74G0743 Tripterygium wilfordii
TWI74G1178 Tripterygium wilfordii
unitig_52.g17430 Utricularia gibba
unitig_92.g28132 Utricularia gibba
vmacro00076 Vaccinium macrocarpon
vmacro00077 Vaccinium macrocarpon
vmacro01826 Vaccinium macrocarpon
vmacro09263 Vaccinium macrocarpon
vmacro19931 Vaccinium macrocarpon
VMungo0251G1505 Vigna mungo
VMungo0251G1593 Vigna mungo
VMungo1127G1471 Vigna mungo
VMungo1215G2504 Vigna mungo
Zm00001eb071870 Zea mays
Zm00001eb071880 Zea mays
Zm00001eb071890 Zea mays
Zm00001eb251680 Zea mays

User provided reference genes

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