Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p06680 Brassica napus
A06p20550 Brassica napus
A09p18330 Brassica napus
A09p18340 Brassica napus
A09p65220 Brassica napus
Aa31LG1G4900 Aethionema arabicum
Aa31LG2G10790 Aethionema arabicum
Aa31LG3G8940 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.276 Anthoceros agrestis
Actinidia08350 Actinidia chinensis
Actinidia10250 Actinidia chinensis
Actinidia11666 Actinidia chinensis
Actinidia19273 Actinidia chinensis
Actinidia23982 Actinidia chinensis
Ah.07g204550 Amaranthus hybridus
Ah.11g038980 Amaranthus hybridus
AL1G20690 Arabidopsis lyrata
AL2G17870 Arabidopsis lyrata
AL8G23490 Arabidopsis lyrata
Aqoxy5G02659 Aquilegia oxysepala
Aqoxy6G00378 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0H8WKK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3D378F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8G9HNR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8YJD6A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AB9876 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EW8P9I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G0H17A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GQ6E1B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L4LHW3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MCUW0T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XH16GM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z08EY9 Arachis hypogaea
AT1G09980 Arabidopsis thaliana
AT1G58350 Arabidopsis thaliana
AT5G49650 Arabidopsis thaliana
ATR0315G023 Amborella trichopoda
ATR0820G193 Amborella trichopoda
Atru.chr13.2595 Acer truncatum
Atru.chr13.918 Acer truncatum
Atru.chr13.919 Acer truncatum
Atru.chr6.982 Acer truncatum
Atru.chr7.541 Acer truncatum
AUR62005970 Chenopodium quinoa
AUR62028100 Chenopodium quinoa
AUR62034953 Chenopodium quinoa
AUR62034954 Chenopodium quinoa
AUR62035764 Chenopodium quinoa
BcaB01g00958 Brassica carinata
BcaC01g01862 Brassica carinata
BcaC04g22145 Brassica carinata
BcaC05g24823 Brassica carinata
BcaC07g41848 Brassica carinata
BolC3t19406H Brassica oleracea
BolC5t29567H Brassica oleracea
BolC8t52452H Brassica oleracea
BolC9t55207H Brassica oleracea
BraA06t23882Z Brassica rapa
BraA09t37464Z Brassica rapa
BraA09t41867Z Brassica rapa
C03p71250 Brassica napus
C05p08150 Brassica napus
C08p49170 Brassica napus
C09p22870 Brassica napus
C09p22880 Brassica napus
CAN.G1801.4 Capsicum annuum
CAN.G1801.5 Capsicum annuum
CAN.G853.38 Capsicum annuum
CANSAT25G1280 Cannabis sativa
CANSAT25G3831 Cannabis sativa
CARHR010100 Cardamine hirsuta
CARHR284170 Cardamine hirsuta
CARHR293240 Cardamine hirsuta
Carub.0001s0941 Capsella rubella
Carub.0002s0620 Capsella rubella
Carub.0008s0951 Capsella rubella
Ca_00099_v3 Cicer arietinum L.
Ca_03352_v3 Cicer arietinum L.
Ca_15555_v3 Cicer arietinum L.
Ca_15557_v3 Cicer arietinum L.
Ca_18321_v3 Cicer arietinum L.
CBR_g40751 Chara braunii
CBR_g50208 Chara braunii
CBR_g50209 Chara braunii
CBR_g50937 Chara braunii
Cc01_g04230 Coffea canephora
Cc02_g27750 Coffea canephora
Cc04_g15120 Coffea canephora
Cc04_g16130 Coffea canephora
Cc08_g09760 Coffea canephora
Cc10_g08000 Coffea canephora
Cc10_g08010 Coffea canephora
Cc11_g07750 Coffea canephora
CDE02G2348 Ceratophyllum demersum
CDE06G2450 Ceratophyllum demersum
Cfa020711 Carpinus fangiana
Cfa020712 Carpinus fangiana
Ciclev10000310m.g Citrus clementina
Ciclev10000361m.g Citrus clementina
Ciclev10000739m.g Citrus clementina
CiPaw.15G153300 Carya illinoinensis
CiPaw.15G153400 Carya illinoinensis
ClCG08G008920 Citrullus lanatus
ClCG08G009120 Citrullus lanatus
COL.COLO4_35356 Corchorus olitorius
COL.COLO4_35357 Corchorus olitorius
COL.COLO4_35358 Corchorus olitorius
Cpa.g.sc160.10 Carica papaya
Cpa.g.sc160.9 Carica papaya
Cpa.g.sc2.34 Carica papaya
Cpa.g.sc2.37 Carica papaya
Cre07.g321100 Chlamydomonas reinhardtii
Cre17.g720261 Chlamydomonas reinhardtii
CsaV3_6G036010 Cucumis sativus L.
CsaV3_6G036230 Cucumis sativus L.
CSS0003613 Camellia sinensis var. sinensis
CSS0033770 Camellia sinensis var. sinensis
DCAR_005504 Daucus carota
DCAR_009544 Daucus carota
DCAR_020038 Daucus carota
Dinv14696 Davidia involucrata
Dinv18177 Davidia involucrata
Dinv22032 Davidia involucrata
Dinv26408 Davidia involucrata
Dinv44906 Davidia involucrata
Duzib041G0753 Durio zibethinus
Duzib093G0139 Durio zibethinus
Duzib093G1672 Durio zibethinus
Duzib116G0138 Durio zibethinus
ECA232G0787 Erigeron canadensis
ECA238G2565 Erigeron canadensis
ECA247G3818 Erigeron canadensis
ECA248G3915 Erigeron canadensis
EL10Ac1g02312 Beta vulgaris
EL10Ac1g02313 Beta vulgaris
EL10Ac3g05154 Beta vulgaris
EL10Ac7g18196 Beta vulgaris
Eucgr.F00471 Eucalyptus grandis
Eucgr.F02184 Eucalyptus grandis
FAN04G0452 Fragaria x ananassa
FAN04G1176 Fragaria x ananassa
FAN08G0520 Fragaria x ananassa
FAN08G2664 Fragaria x ananassa
FAN18G2419 Fragaria x ananassa
FAN18G3130 Fragaria x ananassa
FAN18G4580 Fragaria x ananassa
FvH4_5g33540 Fragaria vesca
FvH4_5g33550 Fragaria vesca
FvH4_5g33570 Fragaria vesca
FvH4_5g33600 Fragaria vesca
Glyma.04G088300 Glycine max
Glyma.04G088400 Glycine max
Glyma.06G090300 Glycine max
Glyma.06G090401 Glycine max
Glyma.08G077100 Glycine max
Glyma.08G183400 Glycine max
Glyma.14G125000 Glycine max
Glyma.15G049300 Glycine max
Glyma.17G191900 Glycine max
Gohir.A01G125100 Gossypium hirsutum
Gohir.A05G214500 Gossypium hirsutum
Gohir.A05G214600 Gossypium hirsutum
Gohir.A06G028401 Gossypium hirsutum
Gohir.A06G028500 Gossypium hirsutum
Gohir.D01G112700 Gossypium hirsutum
Gohir.D05G217800 Gossypium hirsutum
Gohir.D05G217900 Gossypium hirsutum
Gohir.D06G025900 Gossypium hirsutum
Gohir.D06G026800 Gossypium hirsutum
Gohir.D06G026833 Gossypium hirsutum
Gohir.D06G026866 Gossypium hirsutum
Gohir.D06G027300 Gossypium hirsutum
Gohir.D06G145701 Gossypium hirsutum
Gohir.D08G147150 Gossypium hirsutum
Gohir.D13G037000 Gossypium hirsutum
Gorai.002G137500 Gossypium raimondii
Gorai.004G152700 Gossypium raimondii
Gorai.009G224600 Gossypium raimondii
Gorai.009G224700 Gossypium raimondii
Gorai.010G030200 Gossypium raimondii
Gorai.010G030400 Gossypium raimondii
Gorai.010G169800 Gossypium raimondii
Gorai.010G172000 Gossypium raimondii
Gorai.013G041400 Gossypium raimondii
GSVIVG01009259001 Vitis vinifera
GSVIVG01014971001 Vitis vinifera
GSVIVG01029697001 Vitis vinifera
HanXRQChr02g0046991 Helianthus annuus
HanXRQChr08g0210401 Helianthus annuus
HanXRQChr11g0344231 Helianthus annuus
Haze_19010 Corylus avellana
Haze_19016 Corylus avellana
Haze_19017 Corylus avellana
Haze_19018 Corylus avellana
Hma1.2p1_0442F.1_g153890 Hydrangea macrophylla
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla
HPP92_009299 Vanilla planifolia
HPP92_019867 Vanilla planifolia
HPP92_028451 Vanilla planifolia
Hund05240 Selenicereus undatus
Hund05241 Selenicereus undatus
Hund09724 Selenicereus undatus
Lalb_Chr07g0189321 Lupinus albus
Lalb_Chr11g0064671 Lupinus albus
Lalb_Chr11g0064681 Lupinus albus
Lalb_Chr18g0060791 Lupinus albus
Lalb_Chr23g0269821 Lupinus albus
Lj1g0003271 Lotus japonicus
Lj1g0025512 Lotus japonicus
Lj4A79T57 Lonicera japonica
Lj4C747T6 Lonicera japonica
Lj4g0026988 Lotus japonicus
Lj6g0015393 Lotus japonicus
Lju124A19T69 Lonicera japonica
Lju124C19G14 Lonicera japonica
Lju124C19T4 Lonicera japonica
Lsat_1_v5_gn_1_25940 Lactuca sativa
Lsat_1_v5_gn_1_69641 Lactuca sativa
Lsat_1_v5_gn_2_121140 Lactuca sativa
Lsat_1_v5_gn_5_90280 Lactuca sativa
Manes.03G069648 Manihot esculenta
Manes.05G186300 Manihot esculenta
Manes.05G186400 Manihot esculenta
Manes.18G053500 Manihot esculenta
Manes.18G053600 Manihot esculenta
Mapoly0152s0012 Marchantia polymorpha
MBI16_g05037_MAGBIO Magnolia biondii
MBI16_g26737_MAGBIO Magnolia biondii
MBI17_g13522_MAGBIO Magnolia biondii
MBI17_g25901_MAGBIO Magnolia biondii
MBI17_g44339_MAGBIO Magnolia biondii
MBI17_g44340_MAGBIO Magnolia biondii
MCO09G298 Micromonas commoda
MCO10G102 Micromonas commoda
MD08G1210700 Malus domestica
MD08G1211000 Malus domestica
MD15G1398300 Malus domestica
MD15G1398600 Malus domestica
MD15G1427100 Malus domestica
Medtr1g007420 Medicago truncatula
Medtr3g110690 Medicago truncatula
Medtr3g110710 Medicago truncatula
Medtr4g094378 Medicago truncatula
MELO3C019781.2 Cucumis melo
MELO3C026510.2 Cucumis melo
Migut.C00423 Erythranthe guttata
Migut.D01892 Erythranthe guttata
Migut.I00076 Erythranthe guttata
MSTRG.4393 Avicennia marina
MSTRG.914 Avicennia marina
MSTRG.915 Avicennia marina
Nitab4.5_0000642g0240 Nicotiana tabacum
Nitab4.5_0002875g0070 Nicotiana tabacum
Nitab4.5_0003791g0030 Nicotiana tabacum
Nitab4.5_0003791g0040 Nicotiana tabacum
Nitab4.5_0006011g0010 Nicotiana tabacum
Nitab4.5_0010814g0010 Nicotiana tabacum
Nitab4.5_0020568g0010 Nicotiana tabacum
Nn1g06077 Nelumbo nucifera
Nn5g28753 Nelumbo nucifera
Nn5g30719 Nelumbo nucifera
Nn6g32050 Nelumbo nucifera
Oeu011631.2 Olea europaea
Oeu034830.1 Olea europaea
Oeu035948.1 Olea europaea
Oeu035949.1 Olea europaea
Oeu041589.1 Olea europaea
Oeu041590.1 Olea europaea
Oeu046408.1 Olea europaea
Oeu053749.1 Olea europaea
Os01g0604600 Oryza sativa ssp. japonica
Os07g0640200 Oryza sativa ssp. japonica
Os11g0167500 Oryza sativa ssp. japonica
Os12g0164800 Oryza sativa ssp. japonica
Os12g0633000 Oryza sativa ssp. japonica
Peaxi162Scf00017g02238 Petunia axillaris
Peaxi162Scf01174g00119 Petunia axillaris
PGR031G1306 Punica granatum
PGR083G1861 Punica granatum
PGSC0003DMG400004938 Solanum tuberosum
PGSC0003DMG400024574 Solanum tuberosum
Phvul.001G063050 Phaseolus vulgaris
Phvul.002G204000 Phaseolus vulgaris
Phvul.006G210700 Phaseolus vulgaris
Phvul.009G113900 Phaseolus vulgaris
Phvul.009G114000 Phaseolus vulgaris
Potri.013G104400 Populus trichocarpa
Potri.019G077600 Populus trichocarpa
Potri.019G077700 Populus trichocarpa
Pp3c13_15890 Physcomitrium patens
Pp3c4_10480 Physcomitrium patens
Pp3c4_10497 Physcomitrium patens
PRCOL_00000685 Prasinoderma coloniale
Prupe.1G542700 Prunus persica
Prupe.1G542900 Prunus persica
Psat0s221g0120 Pisum sativum
Psat2g123240 Pisum sativum
Psat5g091440 Pisum sativum
Psat7g095680 Pisum sativum
PSO210G2052 Papaver somniferum
PSO447G0306 Papaver somniferum
PSO541G1368 Papaver somniferum
PSO675G3868 Papaver somniferum
QL12p040536 Quercus lobata
QL12p040546 Quercus lobata
RcHm_v2.0_Chr7g0232361 Rosa chinensis
RcHm_v2.0_Chr7g0232371 Rosa chinensis
RcHm_v2.0_Chr7g0232391 Rosa chinensis
RcHm_v2.0_Chr7g0232401 Rosa chinensis
Rhsim01G0193900 Rhododendron simsii
Rhsim06G0067500 Rhododendron simsii
Sabra13G0090300 Salix brachista
Sabra19G0088700 Salix brachista
Sabra19G0088800 Salix brachista
SalBow3G0204 Salvia bowleyana
SalBow5G0425 Salvia bowleyana
SalBow7G3472 Salvia bowleyana
Sc08g0003410 Simmondsia chinensis
Sc13g0010550 Simmondsia chinensis
Sc26g0004310 Simmondsia chinensis
Sed0023766 Sechium edule
Sed0025136 Sechium edule
SEGI_21864 Sequoiadendron giganteum
SEGI_30798 Sequoiadendron giganteum
SEGI_36373 Sequoiadendron giganteum
SGA_v2.0_scaffold114G31863 Striga asiatica
SGA_v2.0_scaffold14G07067 Striga asiatica
SHI20937 Sapria himalayana
SHI20938 Sapria himalayana
SMO339G0045 Selaginella moellendorffii
SMO353G0380 Selaginella moellendorffii
Solyc03g113640.4 Solanum lycopersicum
Solyc04g077030.3 Solanum lycopersicum
Solyc04g077040.3 Solanum lycopersicum
Sopen00g003720 Solanum pennellii
Sopen00g004570 Solanum pennellii
Sopen03g032680 Solanum pennellii
Sp1g08640 Schrenkiella parvula
Sp2g05240 Schrenkiella parvula
SpUn0011_0010 Schrenkiella parvula
SpUn0057_0010 Schrenkiella parvula
SpUn0078_0010 Schrenkiella parvula
SpUn0134_0020 Schrenkiella parvula
TAR250G0002 Trochodendron aralioides
TAR250G0004 Trochodendron aralioides
TAR381G0234 Trochodendron aralioides
TAR625G1477 Trochodendron aralioides
THA.LOC104799841 Tarenaya hassleriana
THA.LOC104816780 Tarenaya hassleriana
THA.LOC104820058 Tarenaya hassleriana
Thecc.08G080000 Theobroma cacao
Thecc.08G080200 Theobroma cacao
Thhalv10006833m.g Eutrema salsugineum
Thhalv10013140m.g Eutrema salsugineum
Thhalv10023308m.g Eutrema salsugineum
TPR.G12371 Trifolium pratense
TPR.G12394 Trifolium pratense
TPR.G12406 Trifolium pratense
TPR.G23822 Trifolium pratense
TPR.G24499 Trifolium pratense
TPR.G24531 Trifolium pratense
TPR.G35403 Trifolium pratense
TPR.G36549 Trifolium pratense
TWI36G0018 Tripterygium wilfordii
TWI36G0349 Tripterygium wilfordii
TWI56G0239 Tripterygium wilfordii
TWI56G0670 Tripterygium wilfordii
unitig_736.g22950 Utricularia gibba
unitig_736.g22951 Utricularia gibba
unitig_744.g24393 Utricularia gibba
vmacro14265 Vaccinium macrocarpon
vmacro14266 Vaccinium macrocarpon
vmacro21383 Vaccinium macrocarpon
VMungo0251G2757 Vigna mungo
VMungo0251G2951 Vigna mungo
VMungo0540G0892 Vigna mungo
VMungo0647G0957 Vigna mungo
VMungo1309G0971 Vigna mungo
VMungo1309G1010 Vigna mungo
VMungo1383G2811 Vigna mungo
Zm00001eb089270 Zea mays
Zm00001eb099430 Zea mays
Zm00001eb109880 Zea mays
Zm00001eb139410 Zea mays
Zm00001eb202450 Zea mays
Zm00001eb214270 Zea mays
Zm00001eb407660 Zea mays

User provided reference genes

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