Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p08680 Brassica napus
A03p00160 Brassica napus
A09p44790 Brassica napus
A10p14560 Brassica napus
Aa31LG1G23270 Aethionema arabicum
Aa31LG3G13070 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3909 Anthoceros agrestis
Actinidia02498 Actinidia chinensis
Actinidia11550 Actinidia chinensis
Actinidia13012 Actinidia chinensis
Actinidia20769 Actinidia chinensis
Actinidia20770 Actinidia chinensis
Actinidia32544 Actinidia chinensis
Actinidia32545 Actinidia chinensis
Ah.12g059080 Amaranthus hybridus
Ah.15g091790 Amaranthus hybridus
AL5G32100 Arabidopsis lyrata
AL8G33100 Arabidopsis lyrata
Aqoxy2G00774 Aquilegia oxysepala
Aqoxy7G02832 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2R4ARY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.85KK33 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AT5B20 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C42T2K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CYM12R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IU86JR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q68A9R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RRL2AN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VBUH3G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WRPV7N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XPD3NZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZG8NF1 Arachis hypogaea
AT3G51660 Arabidopsis thaliana
AT5G01650 Arabidopsis thaliana
AT5G57170 Arabidopsis thaliana
ATR0594G201 Amborella trichopoda
ATR0626G104 Amborella trichopoda
Atru.chr1.94 Acer truncatum
Atru.chr7.752 Acer truncatum
Atru.chr7.773 Acer truncatum
Atru.chr8.2335 Acer truncatum
Atru.chr8.2336 Acer truncatum
AUR62030535 Chenopodium quinoa
AUR62030760 Chenopodium quinoa
AUR62040322 Chenopodium quinoa
AUR62040323 Chenopodium quinoa
AUR62042143 Chenopodium quinoa
BcaB01g00432 Brassica carinata
BcaB01g00497 Brassica carinata
BcaB01g06111 Brassica carinata
BcaB01g06244 Brassica carinata
BcaB08g36075 Brassica carinata
BcaC04g19993 Brassica carinata
BcaC06g31956 Brassica carinata
BcaC06g33000 Brassica carinata
BcaC06g33342 Brassica carinata
BolC3t12597H Brassica oleracea
BolC7t45166H Brassica oleracea
BolC8t50302H Brassica oleracea
BolC9t57751H Brassica oleracea
BraA02t05938Z Brassica rapa
BraA03t13948Z Brassica rapa
BraA09t39942Z Brassica rapa
BraA10t43543Z Brassica rapa
C03p00310 Brassica napus
C07p46480 Brassica napus
C08p26850 Brassica napus
C09p49000 Brassica napus
CAN.G1225.4 Capsicum annuum
CAN.G1288.9 Capsicum annuum
CAN.G555.10 Capsicum annuum
CANSAT11G1296 Cannabis sativa
CANSAT35G0976 Cannabis sativa
CANSAT35G1562 Cannabis sativa
CARHR161260 Cardamine hirsuta
CARHR212010 Cardamine hirsuta
CARHR270940 Cardamine hirsuta
CARHR270960 Cardamine hirsuta
Carub.0005s1802 Capsella rubella
Carub.0006s0018 Capsella rubella
Carub.0008s1768 Capsella rubella
Ca_13500_v3 Cicer arietinum L.
Ca_21255_v3 Cicer arietinum L.
Cc06_g00740 Coffea canephora
Cc06_g00750 Coffea canephora
Cc06_g20800 Coffea canephora
Cc11_g05490 Coffea canephora
CDE04G2421 Ceratophyllum demersum
CDE05G1277 Ceratophyllum demersum
CDE07G1674 Ceratophyllum demersum
Cfa017113 Carpinus fangiana
Cfa017114 Carpinus fangiana
Ciclev10009962m.g Citrus clementina
Ciclev10013125m.g Citrus clementina
Ciclev10013158m.g Citrus clementina
CiPaw.07G197500 Carya illinoinensis
CiPaw.09G215300 Carya illinoinensis
CiPaw.09G215400 Carya illinoinensis
ClCG04G006660 Citrullus lanatus
ClCG04G006670 Citrullus lanatus
ClCG06G013630 Citrullus lanatus
COL.COLO4_07062 Corchorus olitorius
COL.COLO4_14450 Corchorus olitorius
Cpa.g.sc5.238 Carica papaya
Cpa.g.sc5.239 Carica papaya
Cre17.g700100 Chlamydomonas reinhardtii
CsaV3_1G031900 Cucumis sativus L.
CsaV3_4G026740 Cucumis sativus L.
CSS0002580 Camellia sinensis var. sinensis
CSS0004088 Camellia sinensis var. sinensis
CSS0009284 Camellia sinensis var. sinensis
CSS0018668 Camellia sinensis var. sinensis
CSS0023342 Camellia sinensis var. sinensis
CSS0023616 Camellia sinensis var. sinensis
CSS0025944 Camellia sinensis var. sinensis
CSS0033234 Camellia sinensis var. sinensis
CSS0037641 Camellia sinensis var. sinensis
CSS0045292 Camellia sinensis var. sinensis
DCAR_014669 Daucus carota
DCAR_015358 Daucus carota
DCAR_023995 Daucus carota
Dinv12167 Davidia involucrata
Dinv12168 Davidia involucrata
Dinv35414 Davidia involucrata
Dinv41183 Davidia involucrata
Dinv44142 Davidia involucrata
Duzib093G0502 Durio zibethinus
Duzib093G1547 Durio zibethinus
Duzib106G0889 Durio zibethinus
Duzib128G1199 Durio zibethinus
Duzib128G1918 Durio zibethinus
Duzib150G1125 Durio zibethinus
ECA234G3514 Erigeron canadensis
ECA236G0256 Erigeron canadensis
ECA236G2588 Erigeron canadensis
EL10Ac5g12483 Beta vulgaris
EL10Ac5g12484 Beta vulgaris
EL10Ac7g17289 Beta vulgaris
Eucgr.A00617 Eucalyptus grandis
Eucgr.C00111 Eucalyptus grandis
Eucgr.K02210 Eucalyptus grandis
Eucgr.K02946 Eucalyptus grandis
Eucgr.K02947 Eucalyptus grandis
Eucgr.K02948 Eucalyptus grandis
Eucgr.K02950 Eucalyptus grandis
FAN02G2625 Fragaria x ananassa
FAN05G0167 Fragaria x ananassa
FAN05G1553 Fragaria x ananassa
FAN05G3310 Fragaria x ananassa
FAN05G3356 Fragaria x ananassa
FAN09G1491 Fragaria x ananassa
FAN09G4853 Fragaria x ananassa
FAN14G0737 Fragaria x ananassa
FAN14G5047 Fragaria x ananassa
FAN22G1992 Fragaria x ananassa
FAN25G0747 Fragaria x ananassa
FvH4_4g07201 Fragaria vesca
FvH4_6g10610 Fragaria vesca
FvH4_6g10620 Fragaria vesca
Glyma.01G126000 Glycine max
Glyma.01G126200 Glycine max
Glyma.07G156500 Glycine max
Glyma.13G100900 Glycine max
Glyma.17G058800 Glycine max
Glyma.18G207200 Glycine max
Glyma.18G207300 Glycine max
Glyma.18G207400 Glycine max
Glyma.U031705 Glycine max
Glyma.U031805 Glycine max
Gohir.A01G230000 Gossypium hirsutum
Gohir.A08G080600 Gossypium hirsutum
Gohir.A09G168000 Gossypium hirsutum
Gohir.D01G219900 Gossypium hirsutum
Gohir.D08G090700 Gossypium hirsutum
Gohir.D09G163900 Gossypium hirsutum
Gorai.002G266600 Gossypium raimondii
Gorai.004G096000 Gossypium raimondii
Gorai.006G185500 Gossypium raimondii
GSVIVG01029318001 Vitis vinifera
GSVIVG01030268001 Vitis vinifera
GSVIVG01030269001 Vitis vinifera
HanXRQChr09g0245861 Helianthus annuus
HanXRQChr10g0308911 Helianthus annuus
HanXRQChr16g0510271 Helianthus annuus
HanXRQChr16g0510281 Helianthus annuus
Haze_21087 Corylus avellana
Hma1.2p1_0501F.1_g167360 Hydrangea macrophylla
Hma1.2p1_0501F.1_g167370 Hydrangea macrophylla
Hma1.2p1_1326F.1_g275880 Hydrangea macrophylla
HPP92_001130 Vanilla planifolia
HPP92_018577 Vanilla planifolia
Hund14930 Selenicereus undatus
Hund14935 Selenicereus undatus
Hund26162 Selenicereus undatus
Lalb_Chr01g0023341 Lupinus albus
Lalb_Chr01g0023351 Lupinus albus
Lalb_Chr03g0043491 Lupinus albus
Lalb_Chr07g0180661 Lupinus albus
Lalb_Chr07g0191011 Lupinus albus
Lalb_Chr12g0207291 Lupinus albus
Lj1g0013561 Lotus japonicus
Lj1g0019560 Lotus japonicus
Lj3g0012119 Lotus japonicus
Lj3g0013309 Lotus japonicus
Lj3g0026134 Lotus japonicus
Lj4g0008466 Lotus japonicus
Lsat_1_v5_gn_3_83120 Lactuca sativa
Lsat_1_v5_gn_5_107260 Lactuca sativa
Lsat_1_v5_gn_5_149261 Lactuca sativa
Lsat_1_v5_gn_5_149301 Lactuca sativa
Lsat_1_v5_gn_5_83400 Lactuca sativa
Lsat_1_v5_gn_8_103481 Lactuca sativa
Lsat_1_v5_gn_8_103501 Lactuca sativa
Manes.06G018900 Manihot esculenta
Manes.08G097000 Manihot esculenta
Manes.08G097100 Manihot esculenta
Manes.09G111500 Manihot esculenta
Manes.09G111600 Manihot esculenta
Mapoly0034s0002 Marchantia polymorpha
MBI15_g16139_MAGBIO Magnolia biondii
MBI16_g05831_MAGBIO Magnolia biondii
MD04G1166600 Malus domestica
MD04G1166700 Malus domestica
MD12G1179700 Malus domestica
MD16G1248200 Malus domestica
Medtr0562s0020 Medicago truncatula
Medtr4g013730 Medicago truncatula
Medtr4g014040 Medicago truncatula
Medtr4g127360 Medicago truncatula
Medtr7g059460 Medicago truncatula
Medtr7g070250 Medicago truncatula
MELO3C017426.2 Cucumis melo
MELO3C026027.2 Cucumis melo
MELO3C026028.2 Cucumis melo
Migut.J00095 Erythranthe guttata
Migut.J00096 Erythranthe guttata
Migut.J00794 Erythranthe guttata
MSTRG.5540 Avicennia marina
MSTRG.5541 Avicennia marina
MSTRG.5940 Avicennia marina
Nitab4.5_0000230g0250 Nicotiana tabacum
Nitab4.5_0000355g0190 Nicotiana tabacum
Nitab4.5_0000491g0170 Nicotiana tabacum
Nitab4.5_0001226g0110 Nicotiana tabacum
Nitab4.5_0001703g0040 Nicotiana tabacum
Nitab4.5_0003850g0010 Nicotiana tabacum
Nitab4.5_0004057g0050 Nicotiana tabacum
Nitab4.5_0007929g0020 Nicotiana tabacum
Nn2g10204 Nelumbo nucifera
Nn2g11018 Nelumbo nucifera
Nn2g12455 Nelumbo nucifera
Nn2g13266 Nelumbo nucifera
Nn8g40750 Nelumbo nucifera
Oeu023751.1 Olea europaea
Oeu026976.1 Olea europaea
Oeu038717.1 Olea europaea
Oeu038720.1 Olea europaea
Oeu042870.1 Olea europaea
Oeu044669.1 Olea europaea
Os06g0699500 Oryza sativa ssp. japonica
Os11g0107500 Oryza sativa ssp. japonica
Os12g0107500 Oryza sativa ssp. japonica
Peaxi162Scf00046g00227 Petunia axillaris
Peaxi162Scf00264g00841 Petunia axillaris
Peaxi162Scf00744g00337 Petunia axillaris
PGR004G0562 Punica granatum
PGR004G0653 Punica granatum
PGR031G2635 Punica granatum
PGR142G0110 Punica granatum
PGR142G1910 Punica granatum
PGSC0003DMG400010973 Solanum tuberosum
PGSC0003DMG400011036 Solanum tuberosum
PGSC0003DMG400015887 Solanum tuberosum
Phvul.003G141000 Phaseolus vulgaris
Phvul.008G092400 Phaseolus vulgaris
Phvul.008G092500 Phaseolus vulgaris
Phvul.010G064100 Phaseolus vulgaris
Potri.006G075100 Populus trichocarpa
Potri.006G104500 Populus trichocarpa
Potri.006G104600 Populus trichocarpa
Potri.006G104800 Populus trichocarpa
Potri.016G126500 Populus trichocarpa
Potri.016G126600 Populus trichocarpa
Potri.016G126700 Populus trichocarpa
Potri.016G126800 Populus trichocarpa
Potri.016G127300 Populus trichocarpa
Pp3c13_4090 Physcomitrium patens
PRCOL_00003346 Prasinoderma coloniale
Prupe.1G074700 Prunus persica
Prupe.6G284800 Prunus persica
Prupe.6G284900 Prunus persica
Psat0s3066g0160 Pisum sativum
Psat0s3389g0160 Pisum sativum
Psat3g124400 Pisum sativum
Psat3g141520 Pisum sativum
Psat7g249000 Pisum sativum
Psat7g249040 Pisum sativum
PSO063G3366 Papaver somniferum
PSO170G5289 Papaver somniferum
PSO339G5019 Papaver somniferum
PSO349G0178 Papaver somniferum
PSO384G1035 Papaver somniferum
PSO765G0135 Papaver somniferum
QL02p046996 Quercus lobata
QL07p033926 Quercus lobata
QL07p033935 Quercus lobata
RcHm_v2.0_Chr3g0461611 Rosa chinensis
RcHm_v2.0_Chr3g0461621 Rosa chinensis
RcHm_v2.0_Chr4g0397041 Rosa chinensis
RcHm_v2.0_Chr4g0399451 Rosa chinensis
RcHm_v2.0_Chr4g0412811 Rosa chinensis
RcHm_v2.0_Chr7g0212771 Rosa chinensis
Rhsim01G0116400 Rhododendron simsii
Rhsim04G0124700 Rhododendron simsii
Rhsim05G0225700 Rhododendron simsii
Sabra06G0055800 Salix brachista
Sabra06G0081200 Salix brachista
Sabra06G0081300 Salix brachista
Sabra06G0081500 Salix brachista
Sabra16G0120900 Salix brachista
Sabra16G0121000 Salix brachista
Sabra16G0121100 Salix brachista
Sabra16G0121400 Salix brachista
Sabra16G0121500 Salix brachista
Sabra16G0121800 Salix brachista
Sabra16G0121900 Salix brachista
Sabra16G0122000 Salix brachista
Sabra16G0131000 Salix brachista
SalBow1G1724 Salvia bowleyana
SalBow4G0260 Salvia bowleyana
SalBow4G0895 Salvia bowleyana
SalBow4G2163 Salvia bowleyana
Sc07g0006450 Simmondsia chinensis
Sc18g0007240 Simmondsia chinensis
Sc22g0002820 Simmondsia chinensis
Sed0002701 Sechium edule
Sed0013352 Sechium edule
Sed0017699 Sechium edule
Sed0023599 Sechium edule
SEGI_09664 Sequoiadendron giganteum
SEGI_17219 Sequoiadendron giganteum
SGA_v2.0_scaffold31G12769 Striga asiatica
SGA_v2.0_scaffold75G25034 Striga asiatica
SGA_v2.0_scaffold85G26681 Striga asiatica
SHI12874 Sapria himalayana
SMO231G0005 Selaginella moellendorffii
SMO347G0384 Selaginella moellendorffii
SMO356G0607 Selaginella moellendorffii
SMO364G0072 Selaginella moellendorffii
Solyc07g008470.3 Solanum lycopersicum
Solyc10g076350.2 Solanum lycopersicum
Solyc10g085350.2 Solanum lycopersicum
Sopen07g004400 Solanum pennellii
Sopen10g027980 Solanum pennellii
Sopen10g034790 Solanum pennellii
Sp6g18900 Schrenkiella parvula
Sp6g40910 Schrenkiella parvula
TAR623G0950 Trochodendron aralioides
TAR623G0971 Trochodendron aralioides
TAR625G1148 Trochodendron aralioides
TAR633G1071 Trochodendron aralioides
THA.LOC104806117 Tarenaya hassleriana
THA.LOC104816181 Tarenaya hassleriana
THA.LOC104817772 Tarenaya hassleriana
THA.LOC104827060 Tarenaya hassleriana
Thecc.05G006700 Theobroma cacao
Thecc.05G006800 Theobroma cacao
Thecc.09G186400 Theobroma cacao
Thhalv10010841m.g Eutrema salsugineum
Thhalv10015051m.g Eutrema salsugineum
Thhalv10015052m.g Eutrema salsugineum
TPR.G11075 Trifolium pratense
TPR.G23277 Trifolium pratense
TPR.G5213 Trifolium pratense
TPR.G6626 Trifolium pratense
TWI53G0443 Tripterygium wilfordii
TWI59G0536 Tripterygium wilfordii
TWI74G1021 Tripterygium wilfordii
TWI74G1496 Tripterygium wilfordii
unitig_22.g6593 Utricularia gibba
unitig_578.g15731 Utricularia gibba
vmacro08909 Vaccinium macrocarpon
vmacro14176 Vaccinium macrocarpon
vmacro20326 Vaccinium macrocarpon
vmacro20810 Vaccinium macrocarpon
VMungo0331G1605 Vigna mungo
VMungo1215G2778 Vigna mungo
VMungo1383G1192 Vigna mungo
VMungo1383G1760 Vigna mungo
Zm00001eb195060 Zea mays
Zm00001eb226780 Zea mays

User provided reference genes

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