Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p31750 Brassica napus
A06p44010 Brassica napus
A06p44630 Brassica napus
Aa31LG2G8720 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4663 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.4667 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.357 Anthoceros agrestis
Actinidia06581 Actinidia chinensis
Actinidia16693 Actinidia chinensis
Ah.03g138400 Amaranthus hybridus
AL5G10120 Arabidopsis lyrata
Aqoxy2G02174 Aquilegia oxysepala
Aqoxy3G00187 Aquilegia oxysepala
Aqoxy4G00110 Aquilegia oxysepala
Aqoxy4G00111 Aquilegia oxysepala
Aqoxy6G00318 Aquilegia oxysepala
Aqoxy6G00321 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0TB3XB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2BV3KE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.450ZWJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7ZZ76P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9468DL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.95DTLU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A177PK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D9FFLN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KZCX9C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RDZL1S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W1CJMN Arachis hypogaea
AT2G01170 Arabidopsis thaliana
ATR0053G042 Amborella trichopoda
ATR0584G263 Amborella trichopoda
Atru.chr11.267 Acer truncatum
Atru.chr11.268 Acer truncatum
Atru.chr11.270 Acer truncatum
Atru.chr11.284 Acer truncatum
Atru.chr11.286 Acer truncatum
Atru.chr13.1554 Acer truncatum
Atru.chr4.1001 Acer truncatum
AUR62000525 Chenopodium quinoa
AUR62002797 Chenopodium quinoa
AUR62002877 Chenopodium quinoa
AUR62006870 Chenopodium quinoa
AUR62014104 Chenopodium quinoa
AUR62035230 Chenopodium quinoa
AUR62035234 Chenopodium quinoa
BcaB07g30420 Brassica carinata
BcaC03g17003 Brassica carinata
BcaC06g31328 Brassica carinata
BcaC06g34128 Brassica carinata
BcaC06g34212 Brassica carinata
BcaNung05771 Brassica carinata
BolC2t11001H Brassica oleracea
BolC7t43701H Brassica oleracea
BraA02t08183Z Brassica rapa
BraA06t27276Z Brassica rapa
BraA06t27334Z Brassica rapa
C02p49120 Brassica napus
C07p31620 Brassica napus
CAN.G610.7 Capsicum annuum
CAN.G610.8 Capsicum annuum
CANSAT01G2122 Cannabis sativa
CANSAT01G2743 Cannabis sativa
CARHR143710 Cardamine hirsuta
Carub.0005s0014 Capsella rubella
Ca_06897_v3 Cicer arietinum L.
Ca_11127_v3 Cicer arietinum L.
Ca_11128_v3 Cicer arietinum L.
Ca_16986_v3 Cicer arietinum L.
Cc10_g12690 Coffea canephora
Cc11_g09560 Coffea canephora
Cc11_g09570 Coffea canephora
CDE03G0009 Ceratophyllum demersum
CDE08G1491 Ceratophyllum demersum
CDE08G1583 Ceratophyllum demersum
Cfa002197 Carpinus fangiana
Cfa018123 Carpinus fangiana
Cfa018124 Carpinus fangiana
Cfa022141 Carpinus fangiana
Cfa022522 Carpinus fangiana
Cfa024240 Carpinus fangiana
Cfa024263 Carpinus fangiana
Cfa024825 Carpinus fangiana
Cfa025730 Carpinus fangiana
Cfa027377 Carpinus fangiana
Ciclev10000954m.g Citrus clementina
Ciclev10003745m.g Citrus clementina
Ciclev10014915m.g Citrus clementina
Ciclev10017575m.g Citrus clementina
CiPaw.03G117800 Carya illinoinensis
CiPaw.05G243500 Carya illinoinensis
CiPaw.13G001700 Carya illinoinensis
CiPaw.15G032000 Carya illinoinensis
CiPaw.15G032100 Carya illinoinensis
CiPaw.15G032200 Carya illinoinensis
ClCG05G022420 Citrullus lanatus
COL.COLO4_12064 Corchorus olitorius
Cpa.g.sc314.4 Carica papaya
Cpa.g.sc314.6 Carica papaya
Cre01.g023650 Chlamydomonas reinhardtii
Cre02.g108550 Chlamydomonas reinhardtii
Cre04.g226150 Chlamydomonas reinhardtii
Cre07.g348040 Chlamydomonas reinhardtii
Cre11.g467592 Chlamydomonas reinhardtii
CsaV3_5G034670 Cucumis sativus L.
CSS0030385 Camellia sinensis var. sinensis
CSS0032135 Camellia sinensis var. sinensis
CSS0033956 Camellia sinensis var. sinensis
CSS0041244 Camellia sinensis var. sinensis
CSS0048831 Camellia sinensis var. sinensis
DCAR_007269 Daucus carota
Dinv12776 Davidia involucrata
Dinv14670 Davidia involucrata
Dinv16149 Davidia involucrata
Duzib093G0856 Durio zibethinus
Duzib187G0978 Durio zibethinus
Duzib251G0318 Durio zibethinus
ECA246G5139 Erigeron canadensis
EL10Ac4g09633 Beta vulgaris
EL10Ac6g14286 Beta vulgaris
EL10Ac6g14287 Beta vulgaris
EL10Ac7g17605 Beta vulgaris
Eucgr.B02858 Eucalyptus grandis
Eucgr.B02860 Eucalyptus grandis
Eucgr.F03834 Eucalyptus grandis
Eucgr.H02105 Eucalyptus grandis
Eucgr.H05121 Eucalyptus grandis
Eucgr.H05131 Eucalyptus grandis
FAN07G0228 Fragaria x ananassa
FAN12G2229 Fragaria x ananassa
FAN15G1337 Fragaria x ananassa
FAN15G3110 Fragaria x ananassa
FAN17G1541 Fragaria x ananassa
FAN17G2079 Fragaria x ananassa
FAN19G0168 Fragaria x ananassa
FAN20G0899 Fragaria x ananassa
FAN20G2076 Fragaria x ananassa
FAN20G2592 Fragaria x ananassa
FAN22G0815 Fragaria x ananassa
FAN22G2218 Fragaria x ananassa
FAN23G0454 Fragaria x ananassa
FAN24G0211 Fragaria x ananassa
FAN24G1020 Fragaria x ananassa
FAN24G2261 Fragaria x ananassa
FAN26G1803 Fragaria x ananassa
FAN27G0762 Fragaria x ananassa
FAN27G3330 Fragaria x ananassa
FvH4_1g24970 Fragaria vesca
FvH4_2g27760 Fragaria vesca
FvH4_2g27770 Fragaria vesca
FvH4_2g27771 Fragaria vesca
FvH4_4g26580 Fragaria vesca
FvH4_4g26581 Fragaria vesca
Glyma.04G209800 Glycine max
Glyma.06G156200 Glycine max
Glyma.10G269700 Glycine max
Glyma.13G025300 Glycine max
Glyma.20G064200 Glycine max
Glyma.20G121400 Glycine max
Glyma.20G121500 Glycine max
Gohir.A04G099600 Gossypium hirsutum
Gohir.A09G006000 Gossypium hirsutum
Gohir.D04G138900 Gossypium hirsutum
Gohir.D09G005100 Gossypium hirsutum
Gorai.006G006700 Gossypium raimondii
Gorai.012G123900 Gossypium raimondii
GSVIVG01008812001 Vitis vinifera
GSVIVG01011824001 Vitis vinifera
GSVIVG01011825001 Vitis vinifera
GSVIVG01022329001 Vitis vinifera
HanXRQChr05g0160391 Helianthus annuus
HanXRQChr15g0477381 Helianthus annuus
HanXRQChr17g0556641 Helianthus annuus
HanXRQChr17g0556651 Helianthus annuus
Haze_00663 Corylus avellana
Haze_17997 Corylus avellana
Hma1.2p1_0236F.1_g099260 Hydrangea macrophylla
Hma1.2p1_0420F.1_g149660 Hydrangea macrophylla
Hma1.2p1_0767F.1_g215450 Hydrangea macrophylla
Hma1.2p1_0767F.1_g215460 Hydrangea macrophylla
HPP92_009717 Vanilla planifolia
HPP92_011389 Vanilla planifolia
HPP92_011390 Vanilla planifolia
HPP92_019150 Vanilla planifolia
Hund21804 Selenicereus undatus
Hund25026 Selenicereus undatus
Lalb_Chr06g0165811 Lupinus albus
Lalb_Chr08g0238161 Lupinus albus
Lalb_Chr21g0308691 Lupinus albus
Lj1g0018012 Lotus japonicus
Lj2g0018702 Lotus japonicus
Lj3A879T36 Lonicera japonica
Lj3P879T28 Lonicera japonica
Lj4A683G24 Lonicera japonica
Lj5g0006984 Lotus japonicus
Lj5g0011308 Lotus japonicus
Lj6A752T39 Lonicera japonica
Lsat_1_v5_gn_3_57021 Lactuca sativa
Manes.02G167900 Manihot esculenta
Manes.12G147200 Manihot esculenta
Manes.12G159400 Manihot esculenta
Manes.14G107950 Manihot esculenta
Manes.14G108000 Manihot esculenta
Mapoly0071s0058 Marchantia polymorpha
Mapoly0115s0006 Marchantia polymorpha
Mapoly0153s0028 Marchantia polymorpha
MBI03_g28479_MAGBIO Magnolia biondii
MBI06_g35205_MAGBIO Magnolia biondii
MBI11_g14661_MAGBIO Magnolia biondii
MBI13_g01853_MAGBIO Magnolia biondii
MBI16_g14294_MAGBIO Magnolia biondii
MBI16_g14295_MAGBIO Magnolia biondii
MD00G1162100 Malus domestica
MD00G1162300 Malus domestica
MD01G1000200 Malus domestica
MD16G1036200 Malus domestica
MD16G1036300 Malus domestica
Medtr1g109380 Medicago truncatula
Medtr1g109390 Medicago truncatula
Medtr3g096760 Medicago truncatula
MELO3C012281.2 Cucumis melo
MELO3C018300.2 Cucumis melo
Migut.E00379 Erythranthe guttata
Migut.E00380 Erythranthe guttata
Migut.H00823 Erythranthe guttata
MSTRG.2211 Avicennia marina
Nitab4.5_0000694g0210 Nicotiana tabacum
Nitab4.5_0000694g0220 Nicotiana tabacum
Nitab4.5_0000745g0050 Nicotiana tabacum
Nitab4.5_0001769g0180 Nicotiana tabacum
Nitab4.5_0002112g0150 Nicotiana tabacum
Nitab4.5_0002711g0020 Nicotiana tabacum
Nitab4.5_0003715g0010 Nicotiana tabacum
Nitab4.5_0011481g0010 Nicotiana tabacum
Nitab4.5_0014239g0010 Nicotiana tabacum
Nn1g03647 Nelumbo nucifera
Nn1g05323 Nelumbo nucifera
Nn1g07282 Nelumbo nucifera
Nn1g07623 Nelumbo nucifera
Nn2g11792 Nelumbo nucifera
Nn3g17969 Nelumbo nucifera
Nn4g22049 Nelumbo nucifera
Nn4g23282 Nelumbo nucifera
Nn4g23973 Nelumbo nucifera
Nn4g26093 Nelumbo nucifera
Nn5g28430 Nelumbo nucifera
Nn5g29804 Nelumbo nucifera
Oeu013691.1 Olea europaea
Oeu042322.2 Olea europaea
Oeu057764.1 Olea europaea
Os01g0607200 Oryza sativa ssp. japonica
Os01g0945100 Oryza sativa ssp. japonica
Os01g0945200 Oryza sativa ssp. japonica
Os01g0945300 Oryza sativa ssp. japonica
Os01g0945600 Oryza sativa ssp. japonica
Os01g0945700 Oryza sativa ssp. japonica
Os04g0435100 Oryza sativa ssp. japonica
Peaxi162Scf00205g01422 Petunia axillaris
Peaxi162Scf00205g01423 Petunia axillaris
PGR042G2879 Punica granatum
PGR102G0807 Punica granatum
PGR102G1082 Punica granatum
PGR102G3281 Punica granatum
PGSC0003DMG400030568 Solanum tuberosum
Phvul.007G032800 Phaseolus vulgaris
Phvul.007G032900 Phaseolus vulgaris
Phvul.009G154100 Phaseolus vulgaris
Potri.002G078100 Populus trichocarpa
Potri.002G078300 Populus trichocarpa
Potri.002G078501 Populus trichocarpa
Potri.007G100700 Populus trichocarpa
Potri.008G125100 Populus trichocarpa
Potri.010G119100 Populus trichocarpa
Pp3c14_1980 Physcomitrium patens
Pp3c2_21360 Physcomitrium patens
Pp3c3_22090 Physcomitrium patens
Pp3c4_15080 Physcomitrium patens
Prupe.1G192900 Prunus persica
Prupe.1G317800 Prunus persica
Prupe.1G490100 Prunus persica
Prupe.1G490200 Prunus persica
Prupe.1G490300 Prunus persica
Prupe.4G276400 Prunus persica
Psat5g060400 Pisum sativum
Psat6g223720 Pisum sativum
Psat6g223760 Pisum sativum
PSO017G1221 Papaver somniferum
PSO017G5942 Papaver somniferum
PSO017G6229 Papaver somniferum
PSO210G3357 Papaver somniferum
PSO210G4448 Papaver somniferum
PSO339G5194 Papaver somniferum
PSO478G0270 Papaver somniferum
PSO478G2604 Papaver somniferum
PSO478G3513 Papaver somniferum
PSO478G5305 Papaver somniferum
PSO513G0191 Papaver somniferum
QL01p003390 Quercus lobata
QL01p003405 Quercus lobata
QL01p003414 Quercus lobata
QL09p032625 Quercus lobata
QL09p032636 Quercus lobata
QL09p032686 Quercus lobata
QL10p041162 Quercus lobata
RcHm_v2.0_Chr1g0351381 Rosa chinensis
RcHm_v2.0_Chr2g0122601 Rosa chinensis
RcHm_v2.0_Chr4g0434221 Rosa chinensis
RcHm_v2.0_Chr4g0434231 Rosa chinensis
RcHm_v2.0_Chr6g0296631 Rosa chinensis
RcHm_v2.0_Chr6g0296641 Rosa chinensis
RcHm_v2.0_Chr6g0296651 Rosa chinensis
RcHm_v2.0_Chr7g0202541 Rosa chinensis
RcHm_v2.0_Chr7g0243741 Rosa chinensis
Rhsim09G0102700 Rhododendron simsii
Rhsim09G0103000 Rhododendron simsii
Rhsim10G0126900 Rhododendron simsii
Rhsim13G0200300 Rhododendron simsii
Sabra02G0061300 Salix brachista
Sabra02G0061400 Salix brachista
Sabra07G0083300 Salix brachista
Sabra08G0094400 Salix brachista
Sabra08G0094500 Salix brachista
Sabra10G0089500 Salix brachista
SalBow8G0493 Salvia bowleyana
SalBow8G4399 Salvia bowleyana
Sc11g0003850 Simmondsia chinensis
Sc11g0003860 Simmondsia chinensis
Sc15g0007520 Simmondsia chinensis
Sc16g0009560 Simmondsia chinensis
Sed0003635 Sechium edule
Sed0011817 Sechium edule
SEGI_05786 Sequoiadendron giganteum
SGA_v2.0_scaffold170G38811 Striga asiatica
SGA_v2.0_scaffold20G08946 Striga asiatica
SHI09186 Sapria himalayana
SMO111G0228 Selaginella moellendorffii
SMO302G0038 Selaginella moellendorffii
SMO340G0174 Selaginella moellendorffii
SMO347G0667 Selaginella moellendorffii
SMO353G0090 Selaginella moellendorffii
SMO358G0148 Selaginella moellendorffii
SMO358G0283 Selaginella moellendorffii
SMO358G0631 Selaginella moellendorffii
SMO364G0921 Selaginella moellendorffii
SMO367G1226 Selaginella moellendorffii
Solyc05g008770.3 Solanum lycopersicum
Sopen05g004530 Solanum pennellii
Sp2g12630 Schrenkiella parvula
TAR374G0193 Trochodendron aralioides
TAR374G1316 Trochodendron aralioides
TAR376G0975 Trochodendron aralioides
TAR381G0707 Trochodendron aralioides
TAR622G1018 Trochodendron aralioides
TAR622G1182 Trochodendron aralioides
TAR626G0120 Trochodendron aralioides
TAR629G2701 Trochodendron aralioides
THA.LOC104824010 Tarenaya hassleriana
Thecc.01G138300 Theobroma cacao
Thecc.02G220200 Theobroma cacao
Thecc.08G132500 Theobroma cacao
Thhalv10000857m.g Eutrema salsugineum
TPR.G27305 Trifolium pratense
TPR.G33590 Trifolium pratense
TPR.G36260 Trifolium pratense
TPR.G40531 Trifolium pratense
TPR.G4833 Trifolium pratense
TPR.G4881 Trifolium pratense
TPR.G4915 Trifolium pratense
TPR.G4925 Trifolium pratense
TWI31G0767 Tripterygium wilfordii
TWI34G0431 Tripterygium wilfordii
TWI75G1537 Tripterygium wilfordii
TWI79G0363 Tripterygium wilfordii
unitig_21.g20935 Utricularia gibba
unitig_52.g17128 Utricularia gibba
unitig_52.g17614 Utricularia gibba
vmacro04067 Vaccinium macrocarpon
vmacro04068 Vaccinium macrocarpon
vmacro10609 Vaccinium macrocarpon
vmacro10610 Vaccinium macrocarpon
vmacro10611 Vaccinium macrocarpon
vmacro12749 Vaccinium macrocarpon
VMungo0720G1084 Vigna mungo
VMungo0720G2764 Vigna mungo
VMungo0720G2956 Vigna mungo
VMungo0720G3148 Vigna mungo
VMungo1309G1677 Vigna mungo
Zm00001eb141430 Zea mays
Zm00001eb141450 Zea mays
Zm00001eb141470 Zea mays
Zm00001eb161660 Zea mays
Zm00001eb161670 Zea mays
Zm00001eb357860 Zea mays

User provided reference genes

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