Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p29850 Brassica napus
A09p20940 Brassica napus
Aa31LG4G3580 Aethionema arabicum
Aa31LG5G3070 Aethionema arabicum
Aa31sc745G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1749 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.258 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.616 Anthoceros agrestis
Actinidia07175 Actinidia chinensis
Actinidia24136 Actinidia chinensis
Actinidia34680 Actinidia chinensis
Actinidia39331 Actinidia chinensis
Ah.02g126730 Amaranthus hybridus
Ah.12g053740 Amaranthus hybridus
AL1G18500 Arabidopsis lyrata
AL2G33080 Arabidopsis lyrata
AL8G15850 Arabidopsis lyrata
Aqoxy1G02290 Aquilegia oxysepala
Aqoxy1G02294 Aquilegia oxysepala
Aqoxy2G00391 Aquilegia oxysepala
Aqoxy2G01738 Aquilegia oxysepala
Aqoxy3G02562 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.184JTJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6Z9P98 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.945Z0P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CR36LG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DD7GT5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G08S6A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GFC4NY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HEJ2LC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IXI1D4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PY9KME Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PZHE2F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T06XUN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VD8F5Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VMR70Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W1MG13 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XS70FB Arachis hypogaea
AT1G08125 Arabidopsis thaliana
AT1G73320 Arabidopsis thaliana
AT5G44170 Arabidopsis thaliana
ATR0105G012 Amborella trichopoda
ATR0124G013 Amborella trichopoda
ATR0589G004 Amborella trichopoda
ATR0589G081 Amborella trichopoda
ATR0602G270 Amborella trichopoda
Atru.chr2.263 Acer truncatum
Atru.chr3.3538 Acer truncatum
Atru.chr6.2863 Acer truncatum
Atru.chr9.22 Acer truncatum
AUR62014940 Chenopodium quinoa
AUR62029201 Chenopodium quinoa
AUR62036061 Chenopodium quinoa
AUR62038565 Chenopodium quinoa
AUR62042010 Chenopodium quinoa
BcaB03g15706 Brassica carinata
BcaB07g30966 Brassica carinata
BcaB07g34054 Brassica carinata
BcaB07g34057 Brassica carinata
BcaC04g21858 Brassica carinata
BcaC04g21860 Brassica carinata
BcaC05g24730 Brassica carinata
BcaC08g45650 Brassica carinata
BolC5t29378H Brassica oleracea
BolC6t38522H Brassica oleracea
BolC9t55550H Brassica oleracea
BraA06t23725Z Brassica rapa
BraA09t37694Z Brassica rapa
C06p34070 Brassica napus
C09p26540 Brassica napus
CAN.G1808.4 Capsicum annuum
CAN.G466.9 Capsicum annuum
CAN.G546.20 Capsicum annuum
CANSAT11G0022 Cannabis sativa
CANSAT54G1553 Cannabis sativa
CANSAT64G1522 Cannabis sativa
CARHR007930 Cardamine hirsuta
CARHR066370 Cardamine hirsuta
CARHR179100 Cardamine hirsuta
Carub.0001s0747 Capsella rubella
Carub.0002s2007 Capsella rubella
Carub.0008s0435 Capsella rubella
Ca_17938_v3 Cicer arietinum L.
Ca_19306_v3 Cicer arietinum L.
Ca_25281_v3 Cicer arietinum L.
Cc00_g15860 Coffea canephora
Cc00_g15870 Coffea canephora
Cc01_g10470 Coffea canephora
Cc05_g07780 Coffea canephora
Cc08_g01690 Coffea canephora
CDE02G2740 Ceratophyllum demersum
CDE02G3081 Ceratophyllum demersum
CDE04G2005 Ceratophyllum demersum
CDE05G3564 Ceratophyllum demersum
CDE07G0357 Ceratophyllum demersum
CDE09G0573 Ceratophyllum demersum
CDE11G1140 Ceratophyllum demersum
Cfa012366 Carpinus fangiana
Cfa014666 Carpinus fangiana
Cfa014783 Carpinus fangiana
Ciclev10016518m.g Citrus clementina
Ciclev10024563m.g Citrus clementina
Ciclev10029831m.g Citrus clementina
Ciclev10033731m.g Citrus clementina
CiPaw.03G182300 Carya illinoinensis
CiPaw.11G086400 Carya illinoinensis
CiPaw.13G124700 Carya illinoinensis
CiPaw.15G107800 Carya illinoinensis
ClCG02G010320 Citrullus lanatus
ClCG02G021480 Citrullus lanatus
ClCG10G001950 Citrullus lanatus
COL.COLO4_17122 Corchorus olitorius
COL.COLO4_21203 Corchorus olitorius
COL.COLO4_37678 Corchorus olitorius
Cpa.g.sc168.17 Carica papaya
Cpa.g.sc65.35 Carica papaya
Cpa.g.sc83.104 Carica papaya
Cre03.g151650 Chlamydomonas reinhardtii
Cre03.g210401 Chlamydomonas reinhardtii
Cre07.g347800 Chlamydomonas reinhardtii
Cre12.g524550 Chlamydomonas reinhardtii
Cre17.g747147 Chlamydomonas reinhardtii
CsaV3_2G034470 Cucumis sativus L.
CsaV3_6G014250 Cucumis sativus L.
CSS0001278 Camellia sinensis var. sinensis
CSS0010586 Camellia sinensis var. sinensis
CSS0012391 Camellia sinensis var. sinensis
CSS0012428 Camellia sinensis var. sinensis
CSS0029917 Camellia sinensis var. sinensis
CSS0029960 Camellia sinensis var. sinensis
CSS0031987 Camellia sinensis var. sinensis
CSS0039176 Camellia sinensis var. sinensis
CSS0041168 Camellia sinensis var. sinensis
CSS0042158 Camellia sinensis var. sinensis
CSS0047535 Camellia sinensis var. sinensis
DCAR_005441 Daucus carota
DCAR_006111 Daucus carota
DCAR_013041 Daucus carota
Dinv06852 Davidia involucrata
Dinv11736 Davidia involucrata
Dinv34729 Davidia involucrata
Duzib052G0615 Durio zibethinus
Duzib068G0907 Durio zibethinus
Duzib168G0724 Durio zibethinus
Duzib187G1899 Durio zibethinus
Duzib248G1501 Durio zibethinus
ECA233G5032 Erigeron canadensis
ECA240G4616 Erigeron canadensis
EL10Ac4g09667 Beta vulgaris
EL10Ac9g20821 Beta vulgaris
EL10Ac9g22591 Beta vulgaris
Eucgr.B03940 Eucalyptus grandis
Eucgr.K02332 Eucalyptus grandis
FAN02G2936 Fragaria x ananassa
FAN04G0471 Fragaria x ananassa
FAN05G5437 Fragaria x ananassa
FAN13G1167 Fragaria x ananassa
FAN14G0597 Fragaria x ananassa
FAN14G0997 Fragaria x ananassa
FAN14G4128 Fragaria x ananassa
FAN21G1863 Fragaria x ananassa
FAN24G2597 Fragaria x ananassa
FvH4_3g30920 Fragaria vesca
FvH4_5g18590 Fragaria vesca
FvH4_5g20871 Fragaria vesca
FvH4_6g10150 Fragaria vesca
FvH4_6g26750 Fragaria vesca
Glyma.03G073748 Glycine max
Glyma.11G194000 Glycine max
Glyma.12G079900 Glycine max
Glyma.12G110550 Glycine max
Glyma.12G207000 Glycine max
Glyma.12G207100 Glycine max
Glyma.13G293900 Glycine max
Glyma.16G128200 Glycine max
Glyma.16G210702 Glycine max
Gohir.A03G154400 Gossypium hirsutum
Gohir.A05G341900 Gossypium hirsutum
Gohir.A06G084000 Gossypium hirsutum
Gohir.A08G160600 Gossypium hirsutum
Gohir.A12G088350 Gossypium hirsutum
Gohir.D02G177300 Gossypium hirsutum
Gohir.D06G082600 Gossypium hirsutum
Gohir.D08G180900 Gossypium hirsutum
Gohir.D12G086700 Gossypium hirsutum
Gorai.004G189800 Gossypium raimondii
Gorai.005G199000 Gossypium raimondii
Gorai.008G096900 Gossypium raimondii
Gorai.010G096000 Gossypium raimondii
GSVIVG01013248001 Vitis vinifera
GSVIVG01015742001 Vitis vinifera
GSVIVG01024244001 Vitis vinifera
GSVIVG01031494001 Vitis vinifera
HanXRQChr02g0055611 Helianthus annuus
HanXRQChr03g0089261 Helianthus annuus
HanXRQChr17g0555031 Helianthus annuus
Haze_08317 Corylus avellana
Haze_13255 Corylus avellana
Haze_23729 Corylus avellana
Hma1.2p1_0098F.1_g048250 Hydrangea macrophylla
Hma1.2p1_0414F.1_g147600 Hydrangea macrophylla
Hma1.2p1_0734F.1_g210350 Hydrangea macrophylla
Hma1.2p1_0816F.1_g223000 Hydrangea macrophylla
HPP92_021095 Vanilla planifolia
HPP92_023282 Vanilla planifolia
HPP92_025343 Vanilla planifolia
Hund01012 Selenicereus undatus
Hund01472 Selenicereus undatus
Hund22357 Selenicereus undatus
Lalb_Chr03g0027651 Lupinus albus
Lalb_Chr14g0367171 Lupinus albus
Lalb_Chr22g0354061 Lupinus albus
Lj1A210T38 Lonicera japonica
Lj1A709T37 Lonicera japonica
Lj2g0019069 Lotus japonicus
Lj2P248T46 Lonicera japonica
Lj3g0009490 Lotus japonicus
Lj3g0021801 Lotus japonicus
Lj6C106G8 Lonicera japonica
Lj6P105T20 Lonicera japonica
Lsat_1_v5_gn_3_109781 Lactuca sativa
Lsat_1_v5_gn_6_44081 Lactuca sativa
Lsat_1_v5_gn_8_136640 Lactuca sativa
Manes.02G226200 Manihot esculenta
Manes.04G014600 Manihot esculenta
Manes.12G086100 Manihot esculenta
Mapoly0012s0020 Marchantia polymorpha
Mapoly0059s0066 Marchantia polymorpha
Mapoly0111s0044 Marchantia polymorpha
Mapoly0115s0038 Marchantia polymorpha
Mapoly0123s0035 Marchantia polymorpha
MBI03_g11897_MAGBIO Magnolia biondii
MBI03_g13433_MAGBIO Magnolia biondii
MBI03_g44530_MAGBIO Magnolia biondii
MBI06_g34844_MAGBIO Magnolia biondii
MBI06_g45914_MAGBIO Magnolia biondii
MBI18_g12040_MAGBIO Magnolia biondii
MCO04G173 Micromonas commoda
MCO11G491 Micromonas commoda
MCO11G773 Micromonas commoda
MCO12G179 Micromonas commoda
MD03G1234000 Malus domestica
MD06G1042700 Malus domestica
MD06G1241200 Malus domestica
MD11G1146300 Malus domestica
MD11G1254400 Malus domestica
MD14G1247100 Malus domestica
MD14G1247200 Malus domestica
Medtr2g090740 Medicago truncatula
Medtr4g057605 Medicago truncatula
Medtr6g068940 Medicago truncatula
MELO3C013880.2 Cucumis melo
MELO3C019331.2 Cucumis melo
MELO3C026904.2 Cucumis melo
Migut.D02282 Erythranthe guttata
Migut.G01316 Erythranthe guttata
Migut.M00155 Erythranthe guttata
MSTRG.4296 Avicennia marina
MSTRG.6731 Avicennia marina
Nitab4.5_0000242g0140 Nicotiana tabacum
Nitab4.5_0000329g0250 Nicotiana tabacum
Nitab4.5_0000621g0020 Nicotiana tabacum
Nitab4.5_0003499g0010 Nicotiana tabacum
Nitab4.5_0005092g0040 Nicotiana tabacum
Nitab4.5_0005191g0010 Nicotiana tabacum
Nitab4.5_0010815g0010 Nicotiana tabacum
Nn1g00671 Nelumbo nucifera
Nn1g04250 Nelumbo nucifera
Nn3g18545 Nelumbo nucifera
Nn4g24340 Nelumbo nucifera
Nn4g24341 Nelumbo nucifera
Nn6g35272 Nelumbo nucifera
Oeu022441.1 Olea europaea
Oeu027750.2 Olea europaea
Os02g0818700 Oryza sativa ssp. japonica
Os04g0645500 Oryza sativa ssp. japonica
Os05g0564100 Oryza sativa ssp. japonica
Os06g0101100 Oryza sativa ssp. japonica
Peaxi162Scf00075g01540 Petunia axillaris
Peaxi162Scf00141g00215 Petunia axillaris
Peaxi162Scf00845g00006 Petunia axillaris
Peaxi162Scf00892g00120 Petunia axillaris
PGR042G0660 Punica granatum
PGR042G1519 Punica granatum
PGR044G0265 Punica granatum
PGR102G2720 Punica granatum
PGSC0003DMG400009398 Solanum tuberosum
PGSC0003DMG400014616 Solanum tuberosum
PGSC0003DMG400019626 Solanum tuberosum
Phvul.004G136600 Phaseolus vulgaris
Phvul.005G100000 Phaseolus vulgaris
Phvul.011G084600 Phaseolus vulgaris
Potri.001G148200 Populus trichocarpa
Potri.009G006800 Populus trichocarpa
Potri.017G017000 Populus trichocarpa
Potri.017G153900 Populus trichocarpa
Pp3c10_13020 Physcomitrium patens
Pp3c10_3250 Physcomitrium patens
Pp3c26_2100 Physcomitrium patens
Pp3c5_6170 Physcomitrium patens
PRCOL_00001643 Prasinoderma coloniale
Prupe.4G174700 Prunus persica
Prupe.5G245300 Prunus persica
Prupe.6G109400 Prunus persica
Psat1g018240 Pisum sativum
Psat5g273960 Pisum sativum
Psat7g192040 Pisum sativum
PSO063G2222 Papaver somniferum
PSO339G6573 Papaver somniferum
PSO384G4997 Papaver somniferum
PSO541G3055 Papaver somniferum
PSO675G8974 Papaver somniferum
PSO782G0075 Papaver somniferum
PSO801G0856 Papaver somniferum
QL01p015549 Quercus lobata
QL08p040515 Quercus lobata
QL10p033772 Quercus lobata
QL12p007555 Quercus lobata
RcHm_v2.0_Chr0c19g0500101 Rosa chinensis
RcHm_v2.0_Chr4g0415221 Rosa chinensis
RcHm_v2.0_Chr5g0057461 Rosa chinensis
RcHm_v2.0_Chr7g0176921 Rosa chinensis
RcHm_v2.0_Chr7g0207961 Rosa chinensis
Rhsim04G0071400 Rhododendron simsii
Rhsim07G0121000 Rhododendron simsii
Rhsim08G0125500 Rhododendron simsii
Rhsim13G0099500 Rhododendron simsii
Sabra01G0116500 Salix brachista
Sabra01G0118000 Salix brachista
Sabra09G0003900 Salix brachista
Sabra17G0013200 Salix brachista
Sabra17G0126100 Salix brachista
SalBow2G2154 Salvia bowleyana
SalBow3G3662 Salvia bowleyana
SalBow7G4457 Salvia bowleyana
Sc02g0004910 Simmondsia chinensis
Sc10g0008650 Simmondsia chinensis
Sc12g0003250 Simmondsia chinensis
Sed0021598 Sechium edule
Sed0023020 Sechium edule
Sed0025563 Sechium edule
SEGI_05589 Sequoiadendron giganteum
SEGI_26569 Sequoiadendron giganteum
SEGI_27117 Sequoiadendron giganteum
SEGI_27625 Sequoiadendron giganteum
SGA_v2.0_scaffold17G08162 Striga asiatica
SGA_v2.0_scaffold263G45964 Striga asiatica
SGA_v2.0_scaffold70G23483 Striga asiatica
SMO118G0160 Selaginella moellendorffii
SMO196G0271 Selaginella moellendorffii
SMO351G0211 Selaginella moellendorffii
SMO358G0271 Selaginella moellendorffii
Solyc07g053580.3 Solanum lycopersicum
Solyc08g014040.3 Solanum lycopersicum
Solyc11g068990.3 Solanum lycopersicum
Sopen07g027530 Solanum pennellii
Sopen08g004920 Solanum pennellii
Sopen11g027700 Solanum pennellii
Sp1g06760 Schrenkiella parvula
Sp5g28250 Schrenkiella parvula
SpUn0826_0010 Schrenkiella parvula
TAR356G0001 Trochodendron aralioides
TAR374G1398 Trochodendron aralioides
TAR375G0358 Trochodendron aralioides
TAR375G0707 Trochodendron aralioides
TAR375G1087 Trochodendron aralioides
TAR375G1144 Trochodendron aralioides
TAR624G1452 Trochodendron aralioides
TAR636G1265 Trochodendron aralioides
THA.LOC104801156 Tarenaya hassleriana
THA.LOC104808317 Tarenaya hassleriana
THA.LOC104811422 Tarenaya hassleriana
Thecc.01G143100 Theobroma cacao
Thecc.02G187300 Theobroma cacao
Thecc.03G235700 Theobroma cacao
Thecc.09G069900 Theobroma cacao
Thhalv10003267m.g Eutrema salsugineum
Thhalv10008555m.g Eutrema salsugineum
Thhalv10018937m.g Eutrema salsugineum
TPR.G31348 Trifolium pratense
TPR.G6130 Trifolium pratense
TPR.G6417 Trifolium pratense
TWI31G1231 Tripterygium wilfordii
TWI59G0871 Tripterygium wilfordii
TWI81G0159 Tripterygium wilfordii
TWI81G0762 Tripterygium wilfordii
unitig_46.g18246 Utricularia gibba
unitig_746.g26635 Utricularia gibba
vmacro03265 Vaccinium macrocarpon
vmacro17753 Vaccinium macrocarpon
vmacro17754 Vaccinium macrocarpon
VMungo0464G1375 Vigna mungo
VMungo1080G1085 Vigna mungo
VMungo1127G0611 Vigna mungo
Zm00001eb092020 Zea mays
Zm00001eb191340 Zea mays
Zm00001eb218640 Zea mays
Zm00001eb258970 Zea mays
Zm00001eb295360 Zea mays
Zm00001eb295880 Zea mays
Zm00001eb304570 Zea mays
Zm00001eb432040 Zea mays

User provided reference genes

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