Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p20570 Brassica napus
A03p32320 Brassica napus
A04p28450 Brassica napus
A05p07130 Brassica napus
Aa31LG5G10960 Aethionema arabicum
Aa31LG5G20250 Aethionema arabicum
Aa31LG5G22580 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1531 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.1744 Anthoceros agrestis
Actinidia05908 Actinidia chinensis
Actinidia11229 Actinidia chinensis
Actinidia13841 Actinidia chinensis
Actinidia29192 Actinidia chinensis
Actinidia33532 Actinidia chinensis
Actinidia36184 Actinidia chinensis
Ah.08g212000 Amaranthus hybridus
Ah.10g032570 Amaranthus hybridus
Ah.11g044850 Amaranthus hybridus
Ah.16g107990 Amaranthus hybridus
AL3G10310 Arabidopsis lyrata
AL4G33630 Arabidopsis lyrata
AL4G36580 Arabidopsis lyrata
AL5G26000 Arabidopsis lyrata
Aqoxy2G01887 Aquilegia oxysepala
Aqoxy3G01488 Aquilegia oxysepala
Aqoxy4G03160 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.14LK3H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8AR8HF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G7F7H8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P7QXAW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.THM6KE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z0ALQ1 Arachis hypogaea
AT2G37250 Arabidopsis thaliana
AT2G39270 Arabidopsis thaliana
AT3G01820 Arabidopsis thaliana
ATR0618G219 Amborella trichopoda
ATR0618G440 Amborella trichopoda
ATR0686G171 Amborella trichopoda
Atru.chr12.609 Acer truncatum
Atru.chr6.2525 Acer truncatum
Atru.chr8.2533 Acer truncatum
AUR62025918 Chenopodium quinoa
AUR62029638 Chenopodium quinoa
AUR62036010 Chenopodium quinoa
AUR62040517 Chenopodium quinoa
AUR62041614 Chenopodium quinoa
AUR62041780 Chenopodium quinoa
BcaB02g09138 Brassica carinata
BcaC02g07536 Brassica carinata
BcaC02g12046 Brassica carinata
BolC3t14810H Brassica oleracea
BolC3t16206H Brassica oleracea
BolC4t22449H Brassica oleracea
BolC4t28077H Brassica oleracea
BraA03t11300Z Brassica rapa
BraA03t12402Z Brassica rapa
BraA04t18323Z Brassica rapa
BraA05t19678Z Brassica rapa
C03p24170 Brassica napus
C03p39370 Brassica napus
C04p08500 Brassica napus
C04p65750 Brassica napus
CAN.G1965.16 Capsicum annuum
CAN.G307.16 Capsicum annuum
CAN.G350.49 Capsicum annuum
CAN.G473.84 Capsicum annuum
CAN.G94.2 Capsicum annuum
CANSAT25G1114 Cannabis sativa
CANSAT64G1266 Cannabis sativa
CANSAT80G2393 Cannabis sativa
CARHR075110 Cardamine hirsuta
CARHR132340 Cardamine hirsuta
CARHR134020 Cardamine hirsuta
Carub.0003s0024 Capsella rubella
Carub.0004s1916 Capsella rubella
Carub.0004s2132 Capsella rubella
Ca_02308_v3 Cicer arietinum L.
Ca_08816_v3 Cicer arietinum L.
Ca_18152_v3 Cicer arietinum L.
CBR_g31274 Chara braunii
Cc06_g03450 Coffea canephora
Cc07_g00650 Coffea canephora
Cc09_g02340 Coffea canephora
CDE02G4001 Ceratophyllum demersum
CDE04G0962 Ceratophyllum demersum
Cfa001573 Carpinus fangiana
Cfa007247 Carpinus fangiana
Cfa017485 Carpinus fangiana
Cfa018845 Carpinus fangiana
Ciclev10012374m.g Citrus clementina
Ciclev10016237m.g Citrus clementina
Ciclev10021683m.g Citrus clementina
Ciclev10032208m.g Citrus clementina
CiPaw.01G278100 Carya illinoinensis
CiPaw.02G177600 Carya illinoinensis
CiPaw.03G053300 Carya illinoinensis
CiPaw.10G138100 Carya illinoinensis
CiPaw.12G040700 Carya illinoinensis
ClCG02G013780 Citrullus lanatus
ClCG04G008740 Citrullus lanatus
ClCG05G013350 Citrullus lanatus
COL.COLO4_08740 Corchorus olitorius
COL.COLO4_10284 Corchorus olitorius
COL.COLO4_23778 Corchorus olitorius
COL.COLO4_28079 Corchorus olitorius
Cpa.g.c33526 Carica papaya
Cpa.g.sc1.284 Carica papaya
Cpa.g.sc13.145 Carica papaya
Cre08.g377100 Chlamydomonas reinhardtii
CsaV3_3G027210 Cucumis sativus L.
CsaV3_4G024410 Cucumis sativus L.
CsaV3_5G006390 Cucumis sativus L.
CSS0003159 Camellia sinensis var. sinensis
CSS0011435 Camellia sinensis var. sinensis
CSS0020405 Camellia sinensis var. sinensis
CSS0021261 Camellia sinensis var. sinensis
CSS0029900 Camellia sinensis var. sinensis
CSS0038544 Camellia sinensis var. sinensis
CSS0039105 Camellia sinensis var. sinensis
CSS0044242 Camellia sinensis var. sinensis
CSS0050096 Camellia sinensis var. sinensis
DCAR_006480 Daucus carota
DCAR_015087 Daucus carota
Dinv04867 Davidia involucrata
Dinv31377 Davidia involucrata
Dinv33355 Davidia involucrata
Dinv35694 Davidia involucrata
Duzib093G0687 Durio zibethinus
Duzib114G0857 Durio zibethinus
Duzib147G1152 Durio zibethinus
Duzib187G0722 Durio zibethinus
Duzib205G0652 Durio zibethinus
ECA232G3367 Erigeron canadensis
ECA232G4051 Erigeron canadensis
ECA233G2711 Erigeron canadensis
ECA238G4478 Erigeron canadensis
EL10Ac2g03203 Beta vulgaris
EL10Ac2g03537 Beta vulgaris
EL10Ac7g17318 Beta vulgaris
EL10Ac9g22271 Beta vulgaris
Eucgr.G02788 Eucalyptus grandis
Eucgr.J02317 Eucalyptus grandis
Eucgr.K03197 Eucalyptus grandis
Eucgr.L02910 Eucalyptus grandis
FAN01G2880 Fragaria x ananassa
FAN02G0281 Fragaria x ananassa
FAN02G4041 Fragaria x ananassa
FAN04G0090 Fragaria x ananassa
FAN05G1313 Fragaria x ananassa
FAN05G5330 Fragaria x ananassa
FAN06G3500 Fragaria x ananassa
FAN06G4531 Fragaria x ananassa
FAN09G1149 Fragaria x ananassa
FAN09G2664 Fragaria x ananassa
FAN14G0076 Fragaria x ananassa
FAN14G2663 Fragaria x ananassa
FvH4_6g15070 Fragaria vesca
FvH4_6g53130 Fragaria vesca
FvH4_7g20530 Fragaria vesca
Glyma.03G176800 Glycine max
Glyma.10G048200 Glycine max
Glyma.13G136000 Glycine max
Glyma.16G059400 Glycine max
Glyma.19G088000 Glycine max
Glyma.19G177500 Glycine max
Gohir.A05G339900 Gossypium hirsutum
Gohir.A07G052000 Gossypium hirsutum
Gohir.A07G226800 Gossypium hirsutum
Gohir.A10G179100 Gossypium hirsutum
Gohir.A10G208080 Gossypium hirsutum
Gohir.D04G078400 Gossypium hirsutum
Gohir.D07G056500 Gossypium hirsutum
Gohir.D07G234000 Gossypium hirsutum
Gohir.D10G185600 Gossypium hirsutum
Gohir.D10G216300 Gossypium hirsutum
Gorai.001G060000 Gossypium raimondii
Gorai.001G269400 Gossypium raimondii
Gorai.011G208600 Gossypium raimondii
Gorai.011G241900 Gossypium raimondii
Gorai.012G088300 Gossypium raimondii
GSVIVG01001813001 Vitis vinifera
GSVIVG01008511001 Vitis vinifera
GSVIVG01032645001 Vitis vinifera
HanXRQChr02g0051851 Helianthus annuus
HanXRQChr09g0247161 Helianthus annuus
HanXRQChr09g0256091 Helianthus annuus
HanXRQChr13g0399771 Helianthus annuus
HanXRQChr14g0453461 Helianthus annuus
HanXRQChr14g0453951 Helianthus annuus
HanXRQChr15g0467751 Helianthus annuus
Haze_07238 Corylus avellana
Haze_14845 Corylus avellana
Haze_16955 Corylus avellana
Haze_20673 Corylus avellana
Hma1.2p1_0279F.1_g112590 Hydrangea macrophylla
Hma1.2p1_0350F.1_g132680 Hydrangea macrophylla
Hma1.2p1_0786F.1_g217760 Hydrangea macrophylla
Hma1.2p1_0786F.1_g217770 Hydrangea macrophylla
HPP92_005417 Vanilla planifolia
HPP92_020778 Vanilla planifolia
Hund02426 Selenicereus undatus
Hund12061 Selenicereus undatus
Hund13054 Selenicereus undatus
Hund22455 Selenicereus undatus
Lalb_Chr14g0363201 Lupinus albus
Lalb_Chr20g0112891 Lupinus albus
Lalb_Chr21g0314571 Lupinus albus
Lalb_Chr25g0289291 Lupinus albus
Lj1g0000504 Lotus japonicus
Lj1g0006490 Lotus japonicus
Lj3A977G42 Lonicera japonica
Lj5g0014965 Lotus japonicus
Lj8A94T48 Lonicera japonica
Lj9A477T58 Lonicera japonica
Lju41C51T12 Lonicera japonica
Lsat_1_v5_gn_2_109940 Lactuca sativa
Lsat_1_v5_gn_4_185320 Lactuca sativa
Lsat_1_v5_gn_6_29561 Lactuca sativa
Lsat_1_v5_gn_9_66521 Lactuca sativa
Manes.07G104800 Manihot esculenta
Manes.10G040400 Manihot esculenta
Manes.14G053000 Manihot esculenta
Manes.15G158900 Manihot esculenta
Manes.17G104800 Manihot esculenta
Mapoly0010s0027 Marchantia polymorpha
MBI03_g20387_MAGBIO Magnolia biondii
MBI06_g26877_MAGBIO Magnolia biondii
MBI08_g17169_MAGBIO Magnolia biondii
MCO05G477 Micromonas commoda
MD01G1114300 Malus domestica
MD04G1113300 Malus domestica
MD06G1144200 Malus domestica
MD07G1182200 Malus domestica
MD09G1013900 Malus domestica
MD09G1014100 Malus domestica
MD09G1014300 Malus domestica
MD12G1128500 Malus domestica
MD17G1014400 Malus domestica
Medtr1g067050 Medicago truncatula
Medtr7g100530 Medicago truncatula
MELO3C003074.2 Cucumis melo
MELO3C011719.2 Cucumis melo
MELO3C014867.2 Cucumis melo
Migut.F02014 Erythranthe guttata
Migut.H00008 Erythranthe guttata
Migut.L01651 Erythranthe guttata
MSTRG.10293 Avicennia marina
MSTRG.24085 Avicennia marina
MSTRG.27451 Avicennia marina
MSTRG.3089 Avicennia marina
Nitab4.5_0000559g0240 Nicotiana tabacum
Nitab4.5_0000830g0110 Nicotiana tabacum
Nitab4.5_0000848g0170 Nicotiana tabacum
Nitab4.5_0001248g0020 Nicotiana tabacum
Nitab4.5_0002887g0050 Nicotiana tabacum
Nitab4.5_0006819g0010 Nicotiana tabacum
Nitab4.5_0010883g0030 Nicotiana tabacum
Nn2g12955 Nelumbo nucifera
Nn4g22379 Nelumbo nucifera
Oeu013647.1 Olea europaea
Oeu013950.1 Olea europaea
Oeu017248.1 Olea europaea
Oeu029108.1 Olea europaea
Oeu035156.1 Olea europaea
Oeu035214.1 Olea europaea
Oeu057249.1 Olea europaea
Os04g0671100 Oryza sativa ssp. japonica
Os08g0118900 Oryza sativa ssp. japonica
Peaxi162Scf00420g00444 Petunia axillaris
Peaxi162Scf00700g00142 Petunia axillaris
Peaxi162Scf01024g00010 Petunia axillaris
Peaxi162Scf01517g00134 Petunia axillaris
PGR004G1219 Punica granatum
PGR083G1002 Punica granatum
PGR142G1873 Punica granatum
PGSC0003DMG400013379 Solanum tuberosum
PGSC0003DMG400020217 Solanum tuberosum
PGSC0003DMG400027906 Solanum tuberosum
PGSC0003DMG400028992 Solanum tuberosum
Phvul.001G095650 Phaseolus vulgaris
Phvul.001G173800 Phaseolus vulgaris
Phvul.007G162600 Phaseolus vulgaris
Potri.001G333100 Populus trichocarpa
Potri.008G046100 Populus trichocarpa
Potri.010G215300 Populus trichocarpa
Potri.012G095700 Populus trichocarpa
Potri.015G093200 Populus trichocarpa
Pp3c19_8030 Physcomitrium patens
Pp3c21_9280 Physcomitrium patens
PRCOL_00001193 Prasinoderma coloniale
Prupe.2G220900 Prunus persica
Prupe.3G303400 Prunus persica
Prupe.6G244100 Prunus persica
Psat3g046000 Pisum sativum
Psat3g176120 Pisum sativum
Psat6g124800 Pisum sativum
PSO017G0442 Papaver somniferum
PSO339G4458 Papaver somniferum
PSO339G4642 Papaver somniferum
PSO384G0974 Papaver somniferum
PSO384G3186 Papaver somniferum
PSO478G1423 Papaver somniferum
QL02p071905 Quercus lobata
QL05p062226 Quercus lobata
QL05p062231 Quercus lobata
QL07p045602 Quercus lobata
QL08p057276 Quercus lobata
QL10p004214 Quercus lobata
QL10p004219 Quercus lobata
RcHm_v2.0_Chr1g0361231 Rosa chinensis
RcHm_v2.0_Chr1g0364421 Rosa chinensis
RcHm_v2.0_Chr2g0175001 Rosa chinensis
RcHm_v2.0_Chr3g0468251 Rosa chinensis
RcHm_v2.0_Chr7g0190491 Rosa chinensis
Rhsim10G0008200 Rhododendron simsii
Rhsim12G0173600 Rhododendron simsii
RhsimUnG0119600 Rhododendron simsii
Sabra08G0032400 Salix brachista
Sabra10G0166400 Salix brachista
Sabra15G0114800 Salix brachista
Sabra16G0214300 Salix brachista
SalBow1G1605 Salvia bowleyana
SalBow1G3064 Salvia bowleyana
SalBow8G3112 Salvia bowleyana
Sc03g0006650 Simmondsia chinensis
Sc07g0006210 Simmondsia chinensis
Sc09g0006900 Simmondsia chinensis
Sed0009380 Sechium edule
Sed0016418 Sechium edule
Sed0017280 Sechium edule
Sed0018134 Sechium edule
SEGI_12729 Sequoiadendron giganteum
SEGI_15762 Sequoiadendron giganteum
SEGI_37853 Sequoiadendron giganteum
SGA_v2.0_scaffold18G08213 Striga asiatica
SGA_v2.0_scaffold35G14177 Striga asiatica
SGA_v2.0_scaffold62G21446 Striga asiatica
SGA_v2.0_scaffold94G28653 Striga asiatica
SHI28179 Sapria himalayana
SHI43493 Sapria himalayana
SMO223G0036 Selaginella moellendorffii
SMO347G0542 Selaginella moellendorffii
SMO360G0024 Selaginella moellendorffii
Solyc02g093990.4 Solanum lycopersicum
Solyc03g005050.3 Solanum lycopersicum
Solyc04g049690.3 Solanum lycopersicum
Solyc09g007180.3 Solanum lycopersicum
Sopen00g012490 Solanum pennellii
Sopen02g038640 Solanum pennellii
Sopen03g001060 Solanum pennellii
Sopen04g019930 Solanum pennellii
Sopen09g002050 Solanum pennellii
Sp3g00240 Schrenkiella parvula
Sp4g19570 Schrenkiella parvula
Sp4g21580 Schrenkiella parvula
SpUn0018_0090 Schrenkiella parvula
TAR369G1099 Trochodendron aralioides
TAR374G0283 Trochodendron aralioides
TAR622G1171 Trochodendron aralioides
TAR623G1212 Trochodendron aralioides
TAR624G0094 Trochodendron aralioides
TAR629G2233 Trochodendron aralioides
TAR633G1972 Trochodendron aralioides
TAR636G0106 Trochodendron aralioides
TAR636G1763 Trochodendron aralioides
THA.LOC104802376 Tarenaya hassleriana
THA.LOC104823444 Tarenaya hassleriana
THA.LOC104824241 Tarenaya hassleriana
Thecc.03G126400 Theobroma cacao
Thecc.04G031100 Theobroma cacao
Thecc.05G051900 Theobroma cacao
Thecc.10G064900 Theobroma cacao
Thhalv10016987m.g Eutrema salsugineum
Thhalv10017031m.g Eutrema salsugineum
Thhalv10021323m.g Eutrema salsugineum
TPR.G30310 Trifolium pratense
TPR.G36935 Trifolium pratense
TPR.G38326 Trifolium pratense
TWI12G0332 Tripterygium wilfordii
TWI15G1200 Tripterygium wilfordii
TWI38G2194 Tripterygium wilfordii
TWI39G0440 Tripterygium wilfordii
TWI63G1673 Tripterygium wilfordii
unitig_0.g1945 Utricularia gibba
unitig_27.g25370 Utricularia gibba
unitig_744.g24670 Utricularia gibba
vmacro05942 Vaccinium macrocarpon
vmacro07097 Vaccinium macrocarpon
vmacro16668 Vaccinium macrocarpon
vmacro16669 Vaccinium macrocarpon
vmacro20071 Vaccinium macrocarpon
VMungo0720G1365 Vigna mungo
VMungo1383G0136 Vigna mungo
VMungo1383G2239 Vigna mungo
Zm00001eb002420 Zea mays
Zm00001eb066700 Zea mays
Zm00001eb066720 Zea mays
Zm00001eb066740 Zea mays
Zm00001eb066750 Zea mays
Zm00001eb066760 Zea mays
Zm00001eb138610 Zea mays
Zm00001eb261190 Zea mays
Zm00001eb433400 Zea mays

User provided reference genes

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