Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p33420 Brassica napus
A03p00200 Brassica napus
A03p36310 Brassica napus
A04p29330 Brassica napus
A05p07720 Brassica napus
A05p39960 Brassica napus
A06p43180 Brassica napus
A10p33750 Brassica napus
Aa31LG1G23230 Aethionema arabicum
Aa31LG2G7190 Aethionema arabicum
Aa31LG5G18860 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2050 Anthoceros agrestis
Actinidia04860 Actinidia chinensis
Actinidia11555 Actinidia chinensis
Actinidia20759 Actinidia chinensis
Actinidia29074 Actinidia chinensis
Actinidia31955 Actinidia chinensis
Actinidia32537 Actinidia chinensis
Actinidia37604 Actinidia chinensis
Ah.03g134580 Amaranthus hybridus
AL1G65950 Arabidopsis lyrata
AL3G19880 Arabidopsis lyrata
AL5G13070 Arabidopsis lyrata
AL6G10440 Arabidopsis lyrata
Aqoxy1G01298 Aquilegia oxysepala
Aqoxy2G00792 Aquilegia oxysepala
Aqoxy3G03534 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.C3L8SK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J4ZAEP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JQE7IR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X6YF13 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y78ILL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZK9KKJ Arachis hypogaea
AT2G03350 Arabidopsis thaliana
AT3G08890 Arabidopsis thaliana
AT5G01610 Arabidopsis thaliana
AT5G37070 Arabidopsis thaliana
ATR0174G013 Amborella trichopoda
ATR0730G128 Amborella trichopoda
Atru.chr11.1696 Acer truncatum
Atru.chr8.2323 Acer truncatum
AUR62005868 Chenopodium quinoa
AUR62008473 Chenopodium quinoa
AUR62021619 Chenopodium quinoa
AUR62030519 Chenopodium quinoa
AUR62030773 Chenopodium quinoa
AUR62032860 Chenopodium quinoa
BcaB01g06107 Brassica carinata
BcaB01g06239 Brassica carinata
BcaB02g09209 Brassica carinata
BcaB04g18562 Brassica carinata
BcaB04g18567 Brassica carinata
BcaB06g29042 Brassica carinata
BcaB07g30302 Brassica carinata
BcaC01g04202 Brassica carinata
BcaC02g07480 Brassica carinata
BcaC02g11976 Brassica carinata
BcaC03g17212 Brassica carinata
BcaC05g29623 Brassica carinata
BcaC05g29626 Brassica carinata
BcaC06g31187 Brassica carinata
BcaC06g31957 Brassica carinata
BcaC06g31980 Brassica carinata
BcaC06g34003 Brassica carinata
BcaNung03296 Brassica carinata
BolC2t11229H Brassica oleracea
BolC3t12593H Brassica oleracea
BolC3t16663H Brassica oleracea
BolC4t22540H Brassica oleracea
BolC4t28161H Brassica oleracea
BolC5t34553H Brassica oleracea
BolC7t43896H Brassica oleracea
BolC9t60201H Brassica oleracea
BraA02t08364Z Brassica rapa
BraA03t09410Z Brassica rapa
BraA03t12801Z Brassica rapa
BraA04t18400Z Brassica rapa
BraA05t19740Z Brassica rapa
BraA06t27206Z Brassica rapa
BraA10t45405Z Brassica rapa
BraSC256t45928Z Brassica rapa
C02p51410 Brassica napus
C03p00350 Brassica napus
C03p43940 Brassica napus
C04p09360 Brassica napus
C04p66580 Brassica napus
C04p66600 Brassica napus
C05p59000 Brassica napus
C07p33820 Brassica napus
C09p74680 Brassica napus
CAN.G1340.18 Capsicum annuum
CAN.G15.5 Capsicum annuum
CAN.G243.37 Capsicum annuum
CAN.G385.9 Capsicum annuum
CAN.G479.51 Capsicum annuum
CANSAT35G0141 Cannabis sativa
CANSAT35G0716 Cannabis sativa
CANSAT80G0044 Cannabis sativa
CARHR083220 Cardamine hirsuta
CARHR132910 Cardamine hirsuta
CARHR145700 Cardamine hirsuta
CARHR211960 Cardamine hirsuta
Carub.0003s0800 Capsella rubella
Carub.0004s2027 Capsella rubella
Carub.0005s0233 Capsella rubella
Carub.0006s0022 Capsella rubella
Ca_04897_v3 Cicer arietinum L.
Ca_20340_v3 Cicer arietinum L.
Ca_21798_v3 Cicer arietinum L.
Cc04_g14900 Coffea canephora
Cc06_g00870 Coffea canephora
Cc11_g12420 Coffea canephora
CDE02G4700 Ceratophyllum demersum
CDE04G1102 Ceratophyllum demersum
CDE04G1960 Ceratophyllum demersum
CDE06G1234 Ceratophyllum demersum
Cfa008915 Carpinus fangiana
Cfa017129 Carpinus fangiana
Cfa019281 Carpinus fangiana
Ciclev10012934m.g Citrus clementina
Ciclev10022544m.g Citrus clementina
Ciclev10024576m.g Citrus clementina
Ciclev10032888m.g Citrus clementina
CiPaw.05G128500 Carya illinoinensis
CiPaw.06G089500 Carya illinoinensis
CiPaw.09G214000 Carya illinoinensis
CiPaw.10G160200 Carya illinoinensis
CiPaw.11G048300 Carya illinoinensis
ClCG04G006750 Citrullus lanatus
ClCG04G012040 Citrullus lanatus
ClCG05G023900 Citrullus lanatus
COL.COLO4_14467 Corchorus olitorius
COL.COLO4_14468 Corchorus olitorius
COL.COLO4_27945 Corchorus olitorius
COL.COLO4_38428 Corchorus olitorius
Cpa.g.sc13.305 Carica papaya
Cpa.g.sc5.222 Carica papaya
CsaV3_1G005740 Cucumis sativus L.
CsaV3_4G026520 Cucumis sativus L.
CsaV3_5G033120 Cucumis sativus L.
CSS0005435 Camellia sinensis var. sinensis
CSS0011202 Camellia sinensis var. sinensis
CSS0026383 Camellia sinensis var. sinensis
CSS0048651 Camellia sinensis var. sinensis
DCAR_018672 Daucus carota
DCAR_028880 Daucus carota
DCAR_030982 Daucus carota
Dinv10674 Davidia involucrata
Dinv34107 Davidia involucrata
Dinv35386 Davidia involucrata
Dinv38756 Davidia involucrata
Duzib084G0002 Durio zibethinus
Duzib093G0866 Durio zibethinus
Duzib106G0335 Durio zibethinus
Duzib128G0803 Durio zibethinus
Duzib248G1685 Durio zibethinus
Duzib251G0372 Durio zibethinus
ECA236G0600 Erigeron canadensis
ECA246G0914 Erigeron canadensis
ECA246G3364 Erigeron canadensis
ECA248G0001 Erigeron canadensis
EL10Ac5g11073 Beta vulgaris
EL10Ac5g12501 Beta vulgaris
EL10Ac6g13284 Beta vulgaris
Eucgr.A00611 Eucalyptus grandis
Eucgr.A00612 Eucalyptus grandis
Eucgr.B03185 Eucalyptus grandis
Eucgr.K02494 Eucalyptus grandis
Eucgr.K02959 Eucalyptus grandis
FAN02G1235 Fragaria x ananassa
FAN05G4186 Fragaria x ananassa
FAN05G4886 Fragaria x ananassa
FAN05G5236 Fragaria x ananassa
FAN07G2700 Fragaria x ananassa
FAN08G3424 Fragaria x ananassa
FAN09G0708 Fragaria x ananassa
FAN12G3940 Fragaria x ananassa
FAN13G0343 Fragaria x ananassa
FAN14G2875 Fragaria x ananassa
FAN17G2238 Fragaria x ananassa
FAN18G3030 Fragaria x ananassa
FvH4_4g30580 Fragaria vesca
FvH4_5g14440 Fragaria vesca
FvH4_6g10750 Fragaria vesca
Glyma.01G054400 Glycine max
Glyma.01G124602 Glycine max
Glyma.02G112900 Glycine max
Glyma.03G050000 Glycine max
Glyma.07G155400 Glycine max
Glyma.17G103200 Glycine max
Gohir.A01G229400 Gossypium hirsutum
Gohir.A03G068200 Gossypium hirsutum
Gohir.A09G167400 Gossypium hirsutum
Gohir.A13G079500 Gossypium hirsutum
Gohir.D01G219300 Gossypium hirsutum
Gohir.D03G094800 Gossypium hirsutum
Gohir.D09G163300 Gossypium hirsutum
Gohir.D13G079200 Gossypium hirsutum
Gorai.003G098900 Gossypium raimondii
Gorai.006G184900 Gossypium raimondii
Gorai.013G090600 Gossypium raimondii
GSVIVG01007953001 Vitis vinifera
GSVIVG01010096001 Vitis vinifera
GSVIVG01030288001 Vitis vinifera
HanXRQChr15g0481681 Helianthus annuus
HanXRQChr16g0521211 Helianthus annuus
HanXRQChr17g0545431 Helianthus annuus
HanXRQChr17g0565891 Helianthus annuus
Haze_07662 Corylus avellana
Haze_11942 Corylus avellana
Haze_21072 Corylus avellana
Hma1.2p1_0357F.1_g134360 Hydrangea macrophylla
Hma1.2p1_0479F.1_g161600 Hydrangea macrophylla
Hma1.2p1_0501F.1_g167500 Hydrangea macrophylla
Hma1.2p1_3858F.1_g337790 Hydrangea macrophylla
HPP92_006776 Vanilla planifolia
HPP92_015581 Vanilla planifolia
HPP92_020418 Vanilla planifolia
Hund09840 Selenicereus undatus
Hund10934 Selenicereus undatus
Hund14925 Selenicereus undatus
Hund25199 Selenicereus undatus
Lalb_Chr03g0043411 Lupinus albus
Lalb_Chr07g0191141 Lupinus albus
Lalb_Chr10g0098561 Lupinus albus
Lalb_Chr10g0100331 Lupinus albus
Lalb_Chr12g0207171 Lupinus albus
Lalb_Chr17g0340941 Lupinus albus
Lj1g0020229 Lotus japonicus
Lj2A68T56 Lonicera japonica
Lj2g0004417 Lotus japonicus
Lj3A1032T70 Lonicera japonica
Lj3A947G35 Lonicera japonica
Lj3g0017103 Lotus japonicus
Lj4g0008350 Lotus japonicus
Lj5P107T27 Lonicera japonica
Lsat_1_v5_gn_3_51661 Lactuca sativa
Lsat_1_v5_gn_5_21220 Lactuca sativa
Lsat_1_v5_gn_8_102841 Lactuca sativa
Manes.01G031100 Manihot esculenta
Manes.08G096100 Manihot esculenta
Manes.09G110700 Manihot esculenta
Manes.14G082400 Manihot esculenta
Mapoly0112s0014 Marchantia polymorpha
MBI15_g03053_MAGBIO Magnolia biondii
MBI16_g17098_MAGBIO Magnolia biondii
MD04G1164700 Malus domestica
MD06G1198400 Malus domestica
MD12G1178700 Malus domestica
MD16G1065800 Malus domestica
Medtr4g014490 Medicago truncatula
Medtr4g109140 Medicago truncatula
Medtr5g043190 Medicago truncatula
Medtr7g070000 Medicago truncatula
MELO3C002004.2 Cucumis melo
MELO3C012133.2 Cucumis melo
MELO3C026018.2 Cucumis melo
Migut.I00224 Erythranthe guttata
Migut.J00113 Erythranthe guttata
Migut.L01228 Erythranthe guttata
Migut.L02043 Erythranthe guttata
Migut.O00910 Erythranthe guttata
MSTRG.18981 Avicennia marina
MSTRG.22992 Avicennia marina
MSTRG.26832 Avicennia marina
MSTRG.5549 Avicennia marina
Nitab4.5_0000230g0150 Nicotiana tabacum
Nitab4.5_0000334g0160 Nicotiana tabacum
Nitab4.5_0000444g0280 Nicotiana tabacum
Nitab4.5_0000721g0280 Nicotiana tabacum
Nitab4.5_0001211g0110 Nicotiana tabacum
Nitab4.5_0002756g0010 Nicotiana tabacum
Nitab4.5_0005335g0040 Nicotiana tabacum
Nitab4.5_0009689g0010 Nicotiana tabacum
Nitab4.5_0011169g0010 Nicotiana tabacum
Nn2g10993 Nelumbo nucifera
Nn2g13249 Nelumbo nucifera
Nn3g17360 Nelumbo nucifera
Oeu033558.1 Olea europaea
Oeu052464.1 Olea europaea
Oeu055091.1 Olea europaea
Oeu063379.1 Olea europaea
Os01g0565800 Oryza sativa ssp. japonica
Os03g0210500 Oryza sativa ssp. japonica
Os03g0297000 Oryza sativa ssp. japonica
Os05g0346400 Oryza sativa ssp. japonica
Peaxi162Scf00264g00519 Petunia axillaris
Peaxi162Scf00264g00610 Petunia axillaris
Peaxi162Scf00264g00629 Petunia axillaris
Peaxi162Scf00264g00713 Petunia axillaris
Peaxi162Scf00274g00024 Petunia axillaris
Peaxi162Scf00364g00125 Petunia axillaris
Peaxi162Scf01132g00315 Petunia axillaris
PGR004G2193 Punica granatum
PGR031G1845 Punica granatum
PGR044G1706 Punica granatum
PGR102G0849 Punica granatum
PGSC0003DMG400011103 Solanum tuberosum
PGSC0003DMG400015892 Solanum tuberosum
PGSC0003DMG400028332 Solanum tuberosum
PGSC0003DMG400029196 Solanum tuberosum
PGSC0003DMG402024557 Solanum tuberosum
Phvul.002G090100 Phaseolus vulgaris
Phvul.003G187400 Phaseolus vulgaris
Phvul.008G093600 Phaseolus vulgaris
Phvul.010G065500 Phaseolus vulgaris
Potri.006G104000 Populus trichocarpa
Potri.008G092500 Populus trichocarpa
Potri.010G162400 Populus trichocarpa
Potri.016G125300 Populus trichocarpa
Pp3c10_12290 Physcomitrium patens
Pp3c3_23220 Physcomitrium patens
Prupe.1G281300 Prunus persica
Prupe.5G199200 Prunus persica
Prupe.6G283900 Prunus persica
Psat2g127320 Pisum sativum
Psat3g124680 Pisum sativum
Psat4g049040 Pisum sativum
Psat7g247080 Pisum sativum
PSO063G0932 Papaver somniferum
PSO063G7668 Papaver somniferum
PSO081G0043 Papaver somniferum
PSO081G0051 Papaver somniferum
PSO339G2046 Papaver somniferum
PSO349G0127 Papaver somniferum
PSO765G0029 Papaver somniferum
PSO801G0255 Papaver somniferum
QL03p070046 Quercus lobata
QL07p034137 Quercus lobata
QL10p017998 Quercus lobata
QL10p018042 Quercus lobata
RcHm_v2.0_Chr3g0461791 Rosa chinensis
RcHm_v2.0_Chr4g0438961 Rosa chinensis
RcHm_v2.0_Chr7g0182221 Rosa chinensis
Rhsim04G0125700 Rhododendron simsii
Rhsim05G0224600 Rhododendron simsii
Rhsim08G0150300 Rhododendron simsii
Rhsim10G0128600 Rhododendron simsii
Rhsim12G0077500 Rhododendron simsii
Sabra06G0080500 Salix brachista
Sabra08G0069300 Salix brachista
Sabra10G0123600 Salix brachista
Sabra16G0119600 Salix brachista
SalBow4G2990 Salvia bowleyana
SalBow5G1089 Salvia bowleyana
Sc11g0002230 Simmondsia chinensis
Sed0008420 Sechium edule
Sed0022291 Sechium edule
SEGI_34121 Sequoiadendron giganteum
SGA_v2.0_scaffold238G43925 Striga asiatica
SGA_v2.0_scaffold240G44071 Striga asiatica
SGA_v2.0_scaffold313G48317 Striga asiatica
SHI12867 Sapria himalayana
SMO358G0039 Selaginella moellendorffii
Solyc03g115640.3 Solanum lycopersicum
Solyc05g012680.3 Solanum lycopersicum
Solyc09g015420.3 Solanum lycopersicum
Solyc10g076420.2 Solanum lycopersicum
Solyc10g085300.2 Solanum lycopersicum
Sopen03g034630 Solanum pennellii
Sopen05g007510 Solanum pennellii
Sopen09g009090 Solanum pennellii
Sopen10g028070 Solanum pennellii
Sopen10g034750 Solanum pennellii
Sp2g14280 Schrenkiella parvula
Sp3g07280 Schrenkiella parvula
Sp4g20630 Schrenkiella parvula
Sp6g40870 Schrenkiella parvula
TAR374G1623 Trochodendron aralioides
TAR623G1556 Trochodendron aralioides
TAR633G2699 Trochodendron aralioides
TAR636G3566 Trochodendron aralioides
THA.LOC104805182 Tarenaya hassleriana
THA.LOC104816183 Tarenaya hassleriana
THA.LOC104824068 Tarenaya hassleriana
THA.LOC104827058 Tarenaya hassleriana
Thecc.02G337200 Theobroma cacao
Thecc.03G095200 Theobroma cacao
Thecc.05G008100 Theobroma cacao
Thhalv10005001m.g Eutrema salsugineum
Thhalv10011006m.g Eutrema salsugineum
Thhalv10014842m.g Eutrema salsugineum
Thhalv10017321m.g Eutrema salsugineum
Thhalv10021655m.g Eutrema salsugineum
Thhalv10028262m.g Eutrema salsugineum
TPR.G2002 Trifolium pratense
TPR.G5235 Trifolium pratense
TPR.G6635 Trifolium pratense
TWI53G0217 Tripterygium wilfordii
TWI74G1151 Tripterygium wilfordii
TWI79G0905 Tripterygium wilfordii
unitig_22.g6596 Utricularia gibba
vmacro01338 Vaccinium macrocarpon
vmacro08900 Vaccinium macrocarpon
vmacro17580 Vaccinium macrocarpon
vmacro20319 Vaccinium macrocarpon
VMungo0331G0687 Vigna mungo
VMungo1215G0558 Vigna mungo
VMungo1215G2713 Vigna mungo
Zm00001eb007070 Zea mays
Zm00001eb013740 Zea mays
Zm00001eb159870 Zea mays
Zm00001eb286400 Zea mays
Zm00001eb400480 Zea mays

User provided reference genes

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