Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p13160 Brassica napus
A03p30210 Brassica napus
A03p52990 Brassica napus
A06p00880 Brassica napus
A08p15480 Brassica napus
Aa31LG10G1590 Aethionema arabicum
Aa31LG6G3840 Aethionema arabicum
Aa31LG6G3850 Aethionema arabicum
Aa31LG6G3860 Aethionema arabicum
Aa31LG9G9660 Aethionema arabicum
Aa31LG9G9670 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2635 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.1824 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.851 Anthoceros agrestis
Actinidia12612 Actinidia chinensis
Actinidia23454 Actinidia chinensis
Actinidia29268 Actinidia chinensis
Actinidia40211 Actinidia chinensis
AL1G62340 Arabidopsis lyrata
AL6G48290 Arabidopsis lyrata
AL6G48300 Arabidopsis lyrata
AL6G48310 Arabidopsis lyrata
AL6G48330 Arabidopsis lyrata
AL7G32050 Arabidopsis lyrata
AL7G32060 Arabidopsis lyrata
AL7G32070 Arabidopsis lyrata
AL7G32080 Arabidopsis lyrata
AL7G32090 Arabidopsis lyrata
Aqoxy2G03188 Aquilegia oxysepala
Aqoxy4G00142 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2I8X29 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3ZC5FT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8V5DC9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AMCT3P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EFB7JN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GFV0KK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HI2URW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PCG40N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W3R4JG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X54UNA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XHTA8R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y5A610 Arachis hypogaea
AT1G53670 Arabidopsis thaliana
AT4G04800 Arabidopsis thaliana
AT4G04810 Arabidopsis thaliana
AT4G04830 Arabidopsis thaliana
AT4G04840 Arabidopsis thaliana
AT4G21830 Arabidopsis thaliana
AT4G21840 Arabidopsis thaliana
AT4G21850 Arabidopsis thaliana
AT4G21860 Arabidopsis thaliana
ATR0626G300 Amborella trichopoda
Atru.chr2.1823 Acer truncatum
Atru.chr4.2701 Acer truncatum
Atru.chr6.1382 Acer truncatum
AUR62013936 Chenopodium quinoa
AUR62019677 Chenopodium quinoa
AUR62027070 Chenopodium quinoa
AUR62030911 Chenopodium quinoa
BcaB02g10596 Brassica carinata
BcaB07g33310 Brassica carinata
BcaC04g21328 Brassica carinata
BcaC06g30681 Brassica carinata
BcaC08g43548 Brassica carinata
BcaC09g51194 Brassica carinata
BcaNung00830 Brassica carinata
BcaNung00832 Brassica carinata
BcaNung02252 Brassica carinata
BolC1t01540H Brassica oleracea
BolC3t15959H Brassica oleracea
BolC6t36016H Brassica oleracea
BolC7t45639H Brassica oleracea
BolC9t56145H Brassica oleracea
BraA01t01260Z Brassica rapa
BraA03t12205Z Brassica rapa
BraA03t14372Z Brassica rapa
BraA08t33524Z Brassica rapa
BraSC324t45964Z Brassica rapa
C01p15860 Brassica napus
C03p36460 Brassica napus
C03p83760 Brassica napus
C06p09450 Brassica napus
C07p51420 Brassica napus
CAN.G375.60 Capsicum annuum
CAN.G504.57 Capsicum annuum
CAN.G848.3 Capsicum annuum
CAN.G889.13 Capsicum annuum
CANSAT54G1509 Cannabis sativa
CANSAT56G0134 Cannabis sativa
CANSAT78G2453 Cannabis sativa
CARHR043960 Cardamine hirsuta
CARHR107520 Cardamine hirsuta
CARHR228610 Cardamine hirsuta
CARHR252730 Cardamine hirsuta
Carub.0001s4294 Capsella rubella
Carub.0006s3272 Capsella rubella
Carub.0006s3273 Capsella rubella
Carub.0006s3274 Capsella rubella
Carub.0006s3275 Capsella rubella
Carub.0007s1952 Capsella rubella
Carub.0007s1953 Capsella rubella
Carub.0007s1954 Capsella rubella
Carub.0007s1955 Capsella rubella
Carub.0007s1956 Capsella rubella
Carub.0007s1957 Capsella rubella
Carub.0222s0001 Capsella rubella
Carub.0222s0002 Capsella rubella
Carub.0222s0003 Capsella rubella
Ca_12746_v3 Cicer arietinum L.
Ca_18418_v3 Cicer arietinum L.
Ca_18433_v3 Cicer arietinum L.
Ca_30831_v3 Cicer arietinum L.
CBR_g3238 Chara braunii
CBR_g41095 Chara braunii
Cc02_g20490 Coffea canephora
Cc03_g02760 Coffea canephora
Cc05_g10560 Coffea canephora
CDE02G1502 Ceratophyllum demersum
CDE02G3407 Ceratophyllum demersum
CDE05G2318 Ceratophyllum demersum
CDE11G0716 Ceratophyllum demersum
CDE11G1218 Ceratophyllum demersum
Cfa004774 Carpinus fangiana
Cfa004775 Carpinus fangiana
Cfa015541 Carpinus fangiana
Ciclev10006181m.g Citrus clementina
Ciclev10022321m.g Citrus clementina
Ciclev10029224m.g Citrus clementina
CiPaw.01G156800 Carya illinoinensis
CiPaw.05G025700 Carya illinoinensis
CiPaw.11G154500 Carya illinoinensis
ClCG05G005570 Citrullus lanatus
ClCG09G016380 Citrullus lanatus
ClCG11G017090 Citrullus lanatus
COL.COLO4_13972 Corchorus olitorius
COL.COLO4_17392 Corchorus olitorius
COL.COLO4_17849 Corchorus olitorius
Cpa.g.sc1965.1 Carica papaya
Cpa.g.sc77.105 Carica papaya
Cre01.g042050 Chlamydomonas reinhardtii
Cre03.g195850 Chlamydomonas reinhardtii
Cre14.g615000 Chlamydomonas reinhardtii
Cre14.g615100 Chlamydomonas reinhardtii
CsaV3_3G013910 Cucumis sativus L.
CsaV3_4G032740 Cucumis sativus L.
CsaV3_7G007300 Cucumis sativus L.
CSS0001420 Camellia sinensis var. sinensis
CSS0015758 Camellia sinensis var. sinensis
CSS0017138 Camellia sinensis var. sinensis
CSS0020260 Camellia sinensis var. sinensis
CSS0033799 Camellia sinensis var. sinensis
CSS0035833 Camellia sinensis var. sinensis
CSS0037029 Camellia sinensis var. sinensis
CSS0037558 Camellia sinensis var. sinensis
CSS0040171 Camellia sinensis var. sinensis
CSS0046564 Camellia sinensis var. sinensis
DCAR_001763 Daucus carota
DCAR_002428 Daucus carota
DCAR_017585 Daucus carota
Dinv08957 Davidia involucrata
Dinv13350 Davidia involucrata
Dinv38352 Davidia involucrata
Duzib052G1192 Durio zibethinus
Duzib132G0572 Durio zibethinus
Duzib187G0820 Durio zibethinus
Duzib212G0089 Durio zibethinus
Duzib213G0279 Durio zibethinus
ECA236G3041 Erigeron canadensis
ECA236G4212 Erigeron canadensis
ECA236G5012 Erigeron canadensis
EL10Ac9g22136 Beta vulgaris
Eucgr.B01189 Eucalyptus grandis
Eucgr.F01375 Eucalyptus grandis
Eucgr.G01088 Eucalyptus grandis
Eucgr.G01099 Eucalyptus grandis
Eucgr.G01100 Eucalyptus grandis
Eucgr.G01101 Eucalyptus grandis
Eucgr.G01103 Eucalyptus grandis
Eucgr.G01105 Eucalyptus grandis
Eucgr.L01759 Eucalyptus grandis
FAN07G1883 Fragaria x ananassa
FAN11G0595 Fragaria x ananassa
FAN12G1291 Fragaria x ananassa
FAN15G1176 Fragaria x ananassa
FAN16G1305 Fragaria x ananassa
FAN21G2167 Fragaria x ananassa
FAN21G3238 Fragaria x ananassa
FAN21G3749 Fragaria x ananassa
FAN24G0377 Fragaria x ananassa
FAN25G2003 Fragaria x ananassa
FvH4_2g11010 Fragaria vesca
FvH4_3g28950 Fragaria vesca
FvH4_4g13910 Fragaria vesca
Glyma.08G236000 Glycine max
Glyma.13G212000 Glycine max
Glyma.13G253800 Glycine max
Glyma.15G061100 Glycine max
Glyma.15G100700 Glycine max
Gohir.A03G212400 Gossypium hirsutum
Gohir.A08G233400 Gossypium hirsutum
Gohir.A09G232100 Gossypium hirsutum
Gohir.A12G031400 Gossypium hirsutum
Gohir.D02G233900 Gossypium hirsutum
Gohir.D08G253600 Gossypium hirsutum
Gohir.D09G233200 Gossypium hirsutum
Gohir.D12G040900 Gossypium hirsutum
Gorai.004G270500 Gossypium raimondii
Gorai.005G261900 Gossypium raimondii
Gorai.006G256100 Gossypium raimondii
Gorai.008G042700 Gossypium raimondii
GSVIVG01005666001 Vitis vinifera
GSVIVG01014075001 Vitis vinifera
GSVIVG01017852001 Vitis vinifera
HanXRQChr03g0078261 Helianthus annuus
HanXRQChr05g0133121 Helianthus annuus
HanXRQChr07g0194531 Helianthus annuus
HanXRQChr08g0227121 Helianthus annuus
HanXRQChr09g0255871 Helianthus annuus
HanXRQChr15g0495351 Helianthus annuus
HanXRQChr17g0553651 Helianthus annuus
Haze_01008 Corylus avellana
Haze_08451 Corylus avellana
Haze_10371 Corylus avellana
Haze_10372 Corylus avellana
Haze_27414 Corylus avellana
Haze_27633 Corylus avellana
Haze_27726 Corylus avellana
Hma1.2p1_0435F.1_g152540 Hydrangea macrophylla
Hma1.2p1_0643F.1_g194480 Hydrangea macrophylla
Hma1.2p1_0713F.1_g207820 Hydrangea macrophylla
HPP92_000390 Vanilla planifolia
HPP92_003910 Vanilla planifolia
HPP92_003913 Vanilla planifolia
HPP92_016049 Vanilla planifolia
HPP92_028602 Vanilla planifolia
Hund00404 Selenicereus undatus
Hund10393 Selenicereus undatus
Lalb_Chr03g0031391 Lupinus albus
Lalb_Chr15g0087181 Lupinus albus
Lalb_Chr16g0383141 Lupinus albus
Lj3g0024436 Lotus japonicus
Lj4g0023893 Lotus japonicus
Lj5A224T63 Lonicera japonica
Lj6g0005283 Lotus japonicus
Lj8A144T70 Lonicera japonica
Lsat_1_v5_gn_7_100320 Lactuca sativa
Lsat_1_v5_gn_7_83200 Lactuca sativa
Lsat_1_v5_gn_8_77080 Lactuca sativa
Manes.03G090600 Manihot esculenta
Manes.07G048000 Manihot esculenta
Manes.15G020200 Manihot esculenta
Mapoly0057s0057 Marchantia polymorpha
Mapoly0057s0060 Marchantia polymorpha
MBI07_g07815_MAGBIO Magnolia biondii
MBI17_g12081_MAGBIO Magnolia biondii
MBI19_g21634_MAGBIO Magnolia biondii
MCO06G255 Micromonas commoda
MCO16G203 Micromonas commoda
MD03G1251900 Malus domestica
MD05G1050500 Malus domestica
MD10G1058100 Malus domestica
MD13G1177800 Malus domestica
MD13G1178200 Malus domestica
Medtr2g020900 Medicago truncatula
Medtr2g020930 Medicago truncatula
Medtr2g020950 Medicago truncatula
Medtr4g092800 Medicago truncatula
Medtr8g461030 Medicago truncatula
MELO3C006583.2 Cucumis melo
MELO3C016676.2 Cucumis melo
MELO3C018569.2 Cucumis melo
Migut.B00511 Erythranthe guttata
Migut.G00285 Erythranthe guttata
Migut.M00686 Erythranthe guttata
Migut.N01112 Erythranthe guttata
MSTRG.14991 Avicennia marina
MSTRG.16644 Avicennia marina
MSTRG.20247 Avicennia marina
Nitab4.5_0000059g0190 Nicotiana tabacum
Nitab4.5_0001140g0130 Nicotiana tabacum
Nitab4.5_0002290g0060 Nicotiana tabacum
Nitab4.5_0002731g0030 Nicotiana tabacum
Nitab4.5_0003618g0050 Nicotiana tabacum
Nitab4.5_0004008g0050 Nicotiana tabacum
Nitab4.5_0009020g0050 Nicotiana tabacum
Nitab4.5_0010352g0050 Nicotiana tabacum
Nn3g20898 Nelumbo nucifera
Nn3g21176 Nelumbo nucifera
Oeu008553.1 Olea europaea
Oeu050684.1 Olea europaea
Os03g0360700 Oryza sativa ssp. japonica
Os05g0404200 Oryza sativa ssp. japonica
Os06g0472000 Oryza sativa ssp. japonica
Peaxi162Scf00003g02933 Petunia axillaris
Peaxi162Scf00095g00522 Petunia axillaris
Peaxi162Scf00111g01226 Petunia axillaris
Peaxi162Scf00299g00231 Petunia axillaris
Peaxi162Scf00299g00239 Petunia axillaris
PGR031G2396 Punica granatum
PGR042G2018 Punica granatum
PGR083G1294 Punica granatum
PGSC0003DMG400003115 Solanum tuberosum
PGSC0003DMG400007084 Solanum tuberosum
PGSC0003DMG400026788 Solanum tuberosum
Phvul.006G158100 Phaseolus vulgaris
Phvul.006G158300 Phaseolus vulgaris
Phvul.006G198700 Phaseolus vulgaris
Phvul.011G173000 Phaseolus vulgaris
Potri.001G286500 Populus trichocarpa
Potri.008G198600 Populus trichocarpa
Potri.009G080700 Populus trichocarpa
Potri.011G114300 Populus trichocarpa
Pp3c16_290 Physcomitrium patens
Pp3c27_120 Physcomitrium patens
Pp3c6_10330 Physcomitrium patens
PRCOL_00003785 Prasinoderma coloniale
PRCOL_00003904 Prasinoderma coloniale
PRCOL_00004741 Prasinoderma coloniale
PRCOL_00005104 Prasinoderma coloniale
Prupe.1G147300 Prunus persica
Prupe.4G154300 Prunus persica
Prupe.8G076900 Prunus persica
Psat1g185480 Pisum sativum
Psat4g135160 Pisum sativum
Psat7g103960 Pisum sativum
PSO170G4146 Papaver somniferum
PSO302G0045 Papaver somniferum
PSO541G3834 Papaver somniferum
PSO675G7432 Papaver somniferum
QL06p006188 Quercus lobata
QL08p023026 Quercus lobata
QL11p027586 Quercus lobata
RcHm_v2.0_Chr4g0395581 Rosa chinensis
RcHm_v2.0_Chr4g0419881 Rosa chinensis
RcHm_v2.0_Chr5g0051791 Rosa chinensis
RcHm_v2.0_Chr6g0269221 Rosa chinensis
Rhsim05G0095100 Rhododendron simsii
Rhsim06G0212900 Rhododendron simsii
RhsimUnG0077000 Rhododendron simsii
Sabra09G0062500 Salix brachista
Sabra10G0012700 Salix brachista
Sabra11G0100400 Salix brachista
Sabra16G0179000 Salix brachista
Sabra19G0105100 Salix brachista
SalBow6G5250 Salvia bowleyana
SalBow8G0973 Salvia bowleyana
Sc16g0007800 Simmondsia chinensis
Sc18g0007210 Simmondsia chinensis
Sed0000022 Sechium edule
Sed0016813 Sechium edule
Sed0019245 Sechium edule
SEGI_22771 Sequoiadendron giganteum
SGA_v2.0_scaffold142G35640 Striga asiatica
SGA_v2.0_scaffold342G49413 Striga asiatica
SGA_v2.0_scaffold73G24376 Striga asiatica
SMO116G0474 Selaginella moellendorffii
SMO118G0193 Selaginella moellendorffii
SMO147G0040 Selaginella moellendorffii
SMO336G0021 Selaginella moellendorffii
SMO336G0031 Selaginella moellendorffii
Solyc01g080410.3 Solanum lycopersicum
Solyc01g106400.3 Solanum lycopersicum
Solyc07g062060.3 Solanum lycopersicum
Solyc10g047930.2 Solanum lycopersicum
Sopen01g032220 Solanum pennellii
Sopen01g048770 Solanum pennellii
Sopen07g030320 Solanum pennellii
Sopen10g018890 Solanum pennellii
Sp1g40200 Schrenkiella parvula
Sp6g04140 Schrenkiella parvula
Sp7g20000 Schrenkiella parvula
TAR362G0638 Trochodendron aralioides
TAR365G0220 Trochodendron aralioides
TAR626G1952 Trochodendron aralioides
THA.LOC104810406 Tarenaya hassleriana
THA.LOC104813040 Tarenaya hassleriana
Thecc.02G037100 Theobroma cacao
Thecc.04G272100 Theobroma cacao
Thecc.07G148600 Theobroma cacao
Thhalv10012040m.g Eutrema salsugineum
Thhalv10026236m.g Eutrema salsugineum
Thhalv10026512m.g Eutrema salsugineum
Thhalv10029054m.g Eutrema salsugineum
Thhalv10029338m.g Eutrema salsugineum
TPR.G16872 Trifolium pratense
TPR.G18020 Trifolium pratense
TPR.G722 Trifolium pratense
TWI09G0513 Tripterygium wilfordii
TWI59G1226 Tripterygium wilfordii
TWI77G0954 Tripterygium wilfordii
unitig_0.g629 Utricularia gibba
unitig_0.g889 Utricularia gibba
unitig_61.g26044 Utricularia gibba
unitig_749.g14059 Utricularia gibba
vmacro08241 Vaccinium macrocarpon
vmacro11985 Vaccinium macrocarpon
vmacro19589 Vaccinium macrocarpon
VMungo0540G1155 Vigna mungo
VMungo0540G2138 Vigna mungo
VMungo0540G2206 Vigna mungo
VMungo1127G0572 Vigna mungo
Zm00001eb017600 Zea mays
Zm00001eb280080 Zea mays
Zm00001eb349870 Zea mays

User provided reference genes

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