Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p13930 Brassica napus
A07p31930 Brassica napus
A07p35010 Brassica napus
A10p12850 Brassica napus
Aa31LG3G11550 Aethionema arabicum
Aa31sc179G70 Aethionema arabicum
Actinidia02295 Actinidia chinensis
Actinidia03234 Actinidia chinensis
Actinidia05017 Actinidia chinensis
Actinidia05022 Actinidia chinensis
Actinidia13666 Actinidia chinensis
Actinidia14877 Actinidia chinensis
Actinidia14878 Actinidia chinensis
Actinidia16642 Actinidia chinensis
Actinidia26839 Actinidia chinensis
Actinidia30416 Actinidia chinensis
Ah.02g127030 Amaranthus hybridus
Ah.04g166470 Amaranthus hybridus
Ah.14g087450 Amaranthus hybridus
AL2G27480 Arabidopsis lyrata
AL8G31170 Arabidopsis lyrata
Aqoxy1G04232 Aquilegia oxysepala
Aqoxy3G03949 Aquilegia oxysepala
Aqoxy7G02878 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0U26KL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.14A3MN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.55Y2CK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6DSJ3Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.81PAVF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NE4VJA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PUJ5T2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R642H0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WC99XU Arachis hypogaea
AT1G68580 Arabidopsis thaliana
AT5G55600 Arabidopsis thaliana
ATR0624G033 Amborella trichopoda
ATR0665G527 Amborella trichopoda
Atru.chr1.2318 Acer truncatum
Atru.chr2.3666 Acer truncatum
AUR62002888 Chenopodium quinoa
AUR62012831 Chenopodium quinoa
AUR62017067 Chenopodium quinoa
AUR62021826 Chenopodium quinoa
AUR62036419 Chenopodium quinoa
AUR62036425 Chenopodium quinoa
AUR62040648 Chenopodium quinoa
BcaB01g04357 Brassica carinata
BcaB03g15430 Brassica carinata
BcaB03g15837 Brassica carinata
BcaB08g35919 Brassica carinata
BcaC01g06384 Brassica carinata
BcaC04g20216 Brassica carinata
BcaC04g22800 Brassica carinata
BcaC08g45953 Brassica carinata
BcaC08g45956 Brassica carinata
BcaC08g46309 Brassica carinata
BcaNung06725 Brassica carinata
BolC3t14059H Brassica oleracea
BolC6t38852H Brassica oleracea
BolC6t39299H Brassica oleracea
BolC9t57509H Brassica oleracea
BraA03t10694Z Brassica rapa
BraA07t30821Z Brassica rapa
BraA10t43378Z Brassica rapa
C03p16370 Brassica napus
C06p37500 Brassica napus
C06p41260 Brassica napus
C09p46560 Brassica napus
C09p46570 Brassica napus
CAN.G1156.1 Capsicum annuum
CAN.G1156.2 Capsicum annuum
CAN.G1156.3 Capsicum annuum
CAN.G1156.4 Capsicum annuum
CAN.G1156.6 Capsicum annuum
CAN.G1156.7 Capsicum annuum
CAN.G268.2 Capsicum annuum
CAN.G337.18 Capsicum annuum
CAN.G45.8 Capsicum annuum
CAN.G696.3 Capsicum annuum
CAN.G696.4 Capsicum annuum
CAN.G696.5 Capsicum annuum
CANSAT11G2198 Cannabis sativa
CANSAT56G2710 Cannabis sativa
CANSAT64G1699 Cannabis sativa
CARHR061370 Cardamine hirsuta
CARHR268910 Cardamine hirsuta
Carub.0002s1511 Capsella rubella
Carub.0008s1597 Capsella rubella
Ca_00748_v3 Cicer arietinum L.
Ca_18124_v3 Cicer arietinum L.
Ca_20139_v3 Cicer arietinum L.
CBR_g28580 Chara braunii
Cc05_g14810 Coffea canephora
Cc09_g00560 Coffea canephora
Cc11_g10280 Coffea canephora
CDE05G1997 Ceratophyllum demersum
CDE05G2360 Ceratophyllum demersum
CDE05G2558 Ceratophyllum demersum
CDE05G3209 Ceratophyllum demersum
CDE10G0741 Ceratophyllum demersum
CDE10G0887 Ceratophyllum demersum
Cfa000057 Carpinus fangiana
Cfa020213 Carpinus fangiana
Ciclev10007644m.g Citrus clementina
Ciclev10014507m.g Citrus clementina
Ciclev10030866m.g Citrus clementina
CiPaw.09G106800 Carya illinoinensis
CiPaw.09G106900 Carya illinoinensis
CiPaw.10G080100 Carya illinoinensis
CiPaw.11G202300 Carya illinoinensis
CiPaw.12G136600 Carya illinoinensis
ClCG00G005220 Citrullus lanatus
ClCG08G005230 Citrullus lanatus
ClCG09G021150 Citrullus lanatus
COL.COLO4_07905 Corchorus olitorius
COL.COLO4_09808 Corchorus olitorius
Cpa.g.c32159 Carica papaya
Cpa.g.sc1092.1 Carica papaya
Cpa.g.sc12.173 Carica papaya
CsaV3_6G003420 Cucumis sativus L.
CsaV3_7G018360 Cucumis sativus L.
CSS0008486 Camellia sinensis var. sinensis
CSS0012534 Camellia sinensis var. sinensis
CSS0015801 Camellia sinensis var. sinensis
CSS0033276 Camellia sinensis var. sinensis
CSS0035459 Camellia sinensis var. sinensis
CSS0043565 Camellia sinensis var. sinensis
DCAR_002234 Daucus carota
DCAR_007238 Daucus carota
DCAR_010509 Daucus carota
DCAR_010782 Daucus carota
DCAR_013226 Daucus carota
DCAR_017086 Daucus carota
DCAR_030073 Daucus carota
DCAR_030852 Daucus carota
DCAR_030914 Daucus carota
DCAR_032196 Daucus carota
Dinv04403 Davidia involucrata
Dinv04481 Davidia involucrata
Dinv10320 Davidia involucrata
Dinv21105 Davidia involucrata
Dinv40844 Davidia involucrata
Duzib170G0538 Durio zibethinus
Duzib213G0231 Durio zibethinus
Duzib235G1379 Durio zibethinus
Duzib248G0386 Durio zibethinus
Duzib251G0849 Durio zibethinus
Duzib268G1243 Durio zibethinus
Duzib268G1305 Durio zibethinus
ECA234G2014 Erigeron canadensis
ECA240G4731 Erigeron canadensis
ECA246G1112 Erigeron canadensis
EL10Ac4g07607 Beta vulgaris
EL10Ac4g09028 Beta vulgaris
EL10Ac6g14436 Beta vulgaris
EL10Ac8g20242 Beta vulgaris
Eucgr.B03027 Eucalyptus grandis
Eucgr.D01444 Eucalyptus grandis
Eucgr.F03695 Eucalyptus grandis
FAN07G0550 Fragaria x ananassa
FAN11G3308 Fragaria x ananassa
FAN12G1012 Fragaria x ananassa
FAN12G2491 Fragaria x ananassa
FAN16G1163 Fragaria x ananassa
FAN21G2516 Fragaria x ananassa
FAN21G2672 Fragaria x ananassa
FAN22G2176 Fragaria x ananassa
FAN25G2079 Fragaria x ananassa
FAN25G2110 Fragaria x ananassa
FvH4_3g00540 Fragaria vesca
FvH4_3g29480 Fragaria vesca
FvH4_4g27610 Fragaria vesca
Glyma.01G082400 Glycine max
Glyma.02G180400 Glycine max
Glyma.08G263800 Glycine max
Glyma.08G327900 Glycine max
Glyma.09G012600 Glycine max
Glyma.15G117200 Glycine max
Glyma.18G079400 Glycine max
Gohir.A01G090200 Gossypium hirsutum
Gohir.A12G167900 Gossypium hirsutum
Gohir.A13G054100 Gossypium hirsutum
Gohir.D01G075500 Gossypium hirsutum
Gohir.D05G381132 Gossypium hirsutum
Gohir.D05G381733 Gossypium hirsutum
Gohir.D05G381940 Gossypium hirsutum
Gohir.D12G171500 Gossypium hirsutum
Gohir.D13G071600 Gossypium hirsutum
Gorai.002G098700 Gossypium raimondii
Gorai.008G184000 Gossypium raimondii
Gorai.009G448700 Gossypium raimondii
Gorai.013G082000 Gossypium raimondii
GSVIVG01003480001 Vitis vinifera
GSVIVG01003481001 Vitis vinifera
GSVIVG01011911001 Vitis vinifera
GSVIVG01011912001 Vitis vinifera
GSVIVG01011913001 Vitis vinifera
GSVIVG01014643001 Vitis vinifera
HanXRQChr05g0129071 Helianthus annuus
HanXRQChr05g0159921 Helianthus annuus
HanXRQChr07g0195731 Helianthus annuus
HanXRQChr17g0567621 Helianthus annuus
Haze_06997 Corylus avellana
Haze_09805 Corylus avellana
Haze_17465 Corylus avellana
Hma1.2p1_0372F.1_g138410 Hydrangea macrophylla
Hma1.2p1_3293F.1_g334950 Hydrangea macrophylla
HPP92_023453 Vanilla planifolia
HPP92_023479 Vanilla planifolia
HPP92_023602 Vanilla planifolia
Hund01910 Selenicereus undatus
Hund05755 Selenicereus undatus
Lalb_Chr04g0254781 Lupinus albus
Lalb_Chr17g0342061 Lupinus albus
Lalb_Chr17g0348901 Lupinus albus
Lalb_Chr20g0119461 Lupinus albus
Lalb_Chr21g0309001 Lupinus albus
Lj1C888G15 Lonicera japonica
Lj2A258T33 Lonicera japonica
Lj2g0010314 Lotus japonicus
Lj2P258T19 Lonicera japonica
Lj6A761T51 Lonicera japonica
Lj6g0004176 Lotus japonicus
Lj6g0007351 Lotus japonicus
Lj8A177G25 Lonicera japonica
Lsat_1_v5_gn_4_18460 Lactuca sativa
Lsat_1_v5_gn_5_1520 Lactuca sativa
Lsat_1_v5_gn_7_14100 Lactuca sativa
Manes.03G139884 Manihot esculenta
Manes.14G100700 Manihot esculenta
Manes.15G061700 Manihot esculenta
Mapoly0073s0017 Marchantia polymorpha
Mapoly0091s0052 Marchantia polymorpha
MBI12_g23292_MAGBIO Magnolia biondii
MBI12_g26677_MAGBIO Magnolia biondii
MBI12_g26678_MAGBIO Magnolia biondii
MBI19_g09205_MAGBIO Magnolia biondii
MD00G1057800 Malus domestica
MD03G1186700 Malus domestica
MD10G1336900 Malus domestica
MD11G1201800 Malus domestica
MD13G1043500 Malus domestica
MD16G1044300 Malus domestica
Medtr2g026390 Medicago truncatula
Medtr3g058500 Medicago truncatula
Medtr3g462210 Medicago truncatula
Medtr5g055210 Medicago truncatula
MELO3C011556.2 Cucumis melo
MELO3C024916.2 Cucumis melo
Migut.C00291 Erythranthe guttata
Migut.C00292 Erythranthe guttata
Migut.C00293 Erythranthe guttata
Migut.C00294 Erythranthe guttata
Migut.C00295 Erythranthe guttata
Migut.H01623 Erythranthe guttata
Migut.L01075 Erythranthe guttata
Migut.L01392 Erythranthe guttata
Migut.M01432 Erythranthe guttata
Migut.M01664 Erythranthe guttata
MSTRG.14598 Avicennia marina
MSTRG.15787 Avicennia marina
MSTRG.6990 Avicennia marina
MSTRG.7142 Avicennia marina
MSTRG.7143 Avicennia marina
Nitab4.5_0000461g0180 Nicotiana tabacum
Nitab4.5_0001668g0060 Nicotiana tabacum
Nitab4.5_0011356g0020 Nicotiana tabacum
Nn1g03212 Nelumbo nucifera
Nn3g17805 Nelumbo nucifera
Oeu003403.3 Olea europaea
Oeu014349.1 Olea europaea
Oeu033293.1 Olea europaea
Oeu033910.1 Olea europaea
Oeu041431.1 Olea europaea
Oeu051951.1 Olea europaea
Oeu052850.1 Olea europaea
Oeu052865.1 Olea europaea
Oeu057622.1 Olea europaea
Os07g0607300 Oryza sativa ssp. japonica
Os08g0431100 Oryza sativa ssp. japonica
Os09g0408300 Oryza sativa ssp. japonica
Peaxi162Scf00004g01817 Petunia axillaris
Peaxi162Scf00008g00112 Petunia axillaris
Peaxi162Scf00612g00018 Petunia axillaris
PGR031G1519 Punica granatum
PGR042G1789 Punica granatum
PGR102G0992 Punica granatum
PGSC0003DMG400003972 Solanum tuberosum
PGSC0003DMG400003974 Solanum tuberosum
PGSC0003DMG400022180 Solanum tuberosum
PGSC0003DMG401003973 Solanum tuberosum
PGSC0003DMG402003973 Solanum tuberosum
Phvul.003G034900 Phaseolus vulgaris
Phvul.006G055500 Phaseolus vulgaris
Phvul.006G140800 Phaseolus vulgaris
Potri.001G365800 Populus trichocarpa
Potri.006G017400 Populus trichocarpa
Potri.008G119400 Populus trichocarpa
Potri.010G126700 Populus trichocarpa
Potri.016G007500 Populus trichocarpa
Pp3c18_18970 Physcomitrium patens
Pp3c21_10720 Physcomitrium patens
Prupe.1G309000 Prunus persica
Prupe.4G006500 Prunus persica
Prupe.4G239800 Prunus persica
Psat1g173560 Pisum sativum
Psat2g082640 Pisum sativum
Psat6g120600 Pisum sativum
Psat7g121480 Pisum sativum
PSO063G2552 Papaver somniferum
PSO210G5921 Papaver somniferum
PSO302G0099 Papaver somniferum
PSO541G3019 Papaver somniferum
PSO675G2706 Papaver somniferum
QL01p043854 Quercus lobata
QL05p068244 Quercus lobata
QL05p068749 Quercus lobata
QL08p004822 Quercus lobata
RcHm_v2.0_Chr3g0482621 Rosa chinensis
RcHm_v2.0_Chr3g0482631 Rosa chinensis
RcHm_v2.0_Chr3g0482641 Rosa chinensis
RcHm_v2.0_Chr4g0435451 Rosa chinensis
RcHm_v2.0_Chr4g0435461 Rosa chinensis
RcHm_v2.0_Chr5g0000741 Rosa chinensis
RcHm_v2.0_Chr5g0054361 Rosa chinensis
Rhsim04G0013900 Rhododendron simsii
Rhsim06G0227700 Rhododendron simsii
Rhsim12G0082700 Rhododendron simsii
Rhsim13G0142500 Rhododendron simsii
Sabra06G0012400 Salix brachista
Sabra08G0090600 Salix brachista
Sabra10G0096200 Salix brachista
Sabra16G0012300 Salix brachista
Sabra16G0239400 Salix brachista
SalBow1G5059 Salvia bowleyana
SalBow8G2131 Salvia bowleyana
SalBow8G4868 Salvia bowleyana
SalBow8G5049 Salvia bowleyana
Sc11g0003260 Simmondsia chinensis
Sc16g0007960 Simmondsia chinensis
Sed0006171 Sechium edule
Sed0013346 Sechium edule
Sed0025220 Sechium edule
SEGI_19572 Sequoiadendron giganteum
SEGI_29720 Sequoiadendron giganteum
SGA_v2.0_scaffold124G33545 Striga asiatica
SGA_v2.0_scaffold168G38539 Striga asiatica
SGA_v2.0_scaffold171G38882 Striga asiatica
SGA_v2.0_scaffold630G53286 Striga asiatica
SMO141G0222 Selaginella moellendorffii
Solyc04g056747.1 Solanum lycopersicum
Solyc07g065370.4 Solanum lycopersicum
Solyc11g005510.1 Solanum lycopersicum
Solyc11g005520.3 Solanum lycopersicum
Solyc11g005525.1 Solanum lycopersicum
Solyc11g012620.2 Solanum lycopersicum
Sopen01g016480 Solanum pennellii
Sopen07g033570 Solanum pennellii
Sopen11g001500 Solanum pennellii
Sopen11g001510 Solanum pennellii
Sopen11g007360 Solanum pennellii
Sp5g23680 Schrenkiella parvula
Sp6g17520 Schrenkiella parvula
TAR371G0157 Trochodendron aralioides
TAR371G0795 Trochodendron aralioides
TAR374G0757 Trochodendron aralioides
TAR626G1491 Trochodendron aralioides
TAR629G1955 Trochodendron aralioides
THA.LOC104804864 Tarenaya hassleriana
THA.LOC104811654 Tarenaya hassleriana
THA.LOC104817702 Tarenaya hassleriana
THA.LOC104821945 Tarenaya hassleriana
Thecc.02G357100 Theobroma cacao
Thecc.06G237800 Theobroma cacao
Thecc.07G016600 Theobroma cacao
Thhalv10012909m.g Eutrema salsugineum
Thhalv10018227m.g Eutrema salsugineum
TPR.G10567 Trifolium pratense
TPR.G30739 Trifolium pratense
TPR.G38304 Trifolium pratense
TWI38G1307 Tripterygium wilfordii
TWI38G1479 Tripterygium wilfordii
TWI39G0674 Tripterygium wilfordii
TWI75G1749 Tripterygium wilfordii
TWI79G1395 Tripterygium wilfordii
unitig_22.g6873 Utricularia gibba
vmacro01374 Vaccinium macrocarpon
vmacro03621 Vaccinium macrocarpon
vmacro03622 Vaccinium macrocarpon
vmacro09658 Vaccinium macrocarpon
vmacro22711 Vaccinium macrocarpon
vmacro23184 Vaccinium macrocarpon
VMungo0540G2268 Vigna mungo
VMungo0540G2270 Vigna mungo
VMungo1215G2901 Vigna mungo
Zm00001eb014580 Zea mays
Zm00001eb041750 Zea mays
Zm00001eb077360 Zea mays
Zm00001eb077370 Zea mays
Zm00001eb179530 Zea mays
Zm00001eb269920 Zea mays
Zm00001eb327170 Zea mays
Zm00001eb395040 Zea mays
Zm00001eb414820 Zea mays
Zm00001eb420060 Zea mays

User provided reference genes

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